TCONS_00052642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052642
Unique NameTCONS_00052642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052642 ID=TCONS_00052642|Name=TCONS_00052642|organism=Clytia hemisphaerica|type=transcript|length=500bp
TTTTAGAgcaattgaaaataataatggCCGACTTACCTGATAGAAGAAGG
AAGAAAGACAGAAAACATCACCGCAAAGGTGCATCAAACCATGCAAGCAG
CAATGGCATGGATGAAGAATTTGATTCAAATGATGACAACTATAGTGTGG
TCAGTGAGGCTGATTCTGTTGACAGTCAGTTTGCCTTGGAGGACATTGAT
GGTGTCGATTATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAACATTGA
AGGATGTAGACAAAAAGGtTCAAATGGTAGACAAGCTTCCCTCCTAGAAG
TACAAAAGGCTTTACGCAGGAGATACGCTGGCGAATTTTTAACAGACAGG
GTAGAAACTATGATTGACATTTTGGAGAAACTGATGAAGCGTGGTNCCTT
AGAGTGGATAAAATATTATGGAGTTTCTACTATATGCCATATATAGTTTC
ATATAATATACCTTTAATAAGTTCAATAAAGAGTTattttcagcgatttt
Run BLAST on NCBI

transcript from alignment at scaffold_218:753549..757428+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052642 ID=TCONS_00052642|Name=TCONS_00052642|organism=Clytia hemisphaerica|type=transcript|length=3880bp|location=Sequence derived from alignment at scaffold_218:753549..757428+ (Clytia hemisphaerica)
TTTTAGAgcaattgaaaataataatggCCGACTTACCTGATAGAAGAAGG
AAGAAAGACAGAAAACATCACCGCAAAGGTAGACTTTATTCACCCAAAAG
TCAACTGGATAGCAACTGCATCAAAACTTATTTCCAGCTTTTTTTTCTCC
ATAATACAGCCTTTCTGTCAATGAAAAGAAATGTGGTGATATGTGATGGT
TTTTTTTTCACTACAAAAAATTCACTTGTGATATTCTTTCTTTAATGCAG
AATTATTCTTATGTTTAATAACATGACACCTTatattactttttgttttt
tcccttTAGGTGCATCAAACCATGCAAGCAGCAATGGCATGGATGAAGAA
TTTGATTCAAATGATGACAACTATAGTGTGGTCAGTGAGGCTGATTCTGT
TGACAGTCAGTTTGCCTTGGAGGACATTGATGGTATGAAAACAAAATAGT
TCTGATggcaattaacaaaattgaaaagAGCCTAAGGCGCTttcaaatta
gaaatttctttttgagGATATAATATTCAgaccatttttttgttttttag
aagGTGTCGATTATATGGAAGACTTTGAAGGAAAGCTAAAAGAGAACATT
GAAGGATGTAGACAAAAAGGGTAATTAATCATTTGAGACCCTCTCtaaac
caggggggggggtcagtgtaccagaaggtggcatgtatcctggggtgggt
gggtgtttgagaaaaaaatttgtcatgtactacctgtgtactataattgg
ggtgttgggtccaaaatcgaatttgattttactacctgtgtaccaaaata
ggggtgttgggtccaaaatcgatgttaaaagtgtggaaacaaaaaggtta
agaaattagaaaatagaaaatgtaaagttgttctattataaattgatcaa
gccaagtttgtccaagatcattcttccaaacttcttggaatgGATTGAAA
TCCTACTAGATCCCACTGAAATGAAGGTTTATcgagtcaatgtaaacatt
ccaacatttgaattcaaacattcaacattggtgccaactctcacgcattg
ggtgtgagactcgtgcatttccacatggtctcgcatagtttttgaaaagt
ttgatttcttacgcattttggatttttgagaaaaattttcctgtttttcc
gatttttggaaaaaagttttcccaatttcccaatttcctgattttccgaa
aaaaagttttcccgatttcctgatttttggaaaaatgtttacccgatttt
ccgatttttggaaaaaagtttctttttttttcggatttttcTAGGTAGTG
CCCGGTAGTAAatggggggtatggggtggttttgttttttttcaaggtac
tacccggtagtaaatagggggtatggggtggttttagGATTTTTCCATGT
AGTNcccccccccccccccgtctaaACATTGTCTTCCTATCTTGCCTTGT
TGATATATATATGTGACTCCCCCATCCGATATTTTGAATACCTAAAAATT
GATTAGTCTTGGTACGGTAATTGGGAGAAGTCTAATATTGATCAAGATTT
TGTTTTGGATCAGCTTCAGTCattgtaaaaaatttgattgCAGCGGGTCC
TTGTGGCTTGCAGACGTTAATGACCCATCTTTTGACCTTCTGACTGCTCC
TTAGTGTTTGTTAGTGATGCtcacatcaaaaaattcttttaaaaagatgT
CAGCCAGTAAATCTGGGATCTGGGCCTGGGATGCAAAAGACACATTGAAA
TGGCCTCTAGATTAACTGCACTCGTAGTATCCTTTTGGTAAATTGTTATT
GAAAAAGACCATCAAAGACTGGTCCGATTTTTAAGTACTTAGTAATAAGA
TTGCTTGGGGAGTCATTTATTTGTACTTTGTCATCAAGAAATCATTGAGA
CAGGTCCCATGAGGAACTTTGATATTAAAACAagtcaattctttttttaa
acgaAATTGTTAAAATGATATAGAATGTTTATAATTCATAGTAACTTCAA
ACTCttgcatttaaaaaaaggtttcgctcagaaaaacacaattcttGAGT
GAAGAAACTATTTCGGGCTTGTTTAGACTTCATGGTTATTTTAGAGCCAT
TTTTTAGAAGGCGCGCAATTTAACAGACTCAGATCTGacgaggctcaaaa
tttaagatttttttaagccaTACTCCTTATAAGAAAATGCAGACTCTCAT
AAATTTTGACCTCCCTCTCAGATCAGCCActgattttcataattttttat
aaaccTTTACAatgtttcttctttctttttagtTCAAATGGTAGACAAGC
TTCCCTCCTAGAAGTACAAAAGGCTTTACGCAGGAGATACGCTGGCGAAT
TTTTAACAGACAGGTTCTCTCCAAGTCTCAAAttcttcttttcattgttt
tctaccatctgtttgaaaatattttatatttttccagatttttcaaCCTG
TAGACAGAAGTCTATCATATCAAGTAAAGATATTTTTCCAGAATTTCAAT
ATTTGCAAGAAGAAGCTTTGCAATAAATGATGTTTGATTTATGGAAGTTT
TGGCTGGTTTTGGTCAAATTCAACAAAAGTGTTGACagtattagaaaaaa
aatttagatagCCAAATGGACATGTTCATTAAaaacgtcaaattttcaag
gtttttgtgacatttttaaaTCATGTTACAAAATTATCTATAACTTTTTA
ATACTATATGATATAGAAAACCAACCTAAATGATGGTTAAGTAGGTGGAT
AGTCTTGTGACAGTTTTTCTATACTCTTTACCTAAGTCAGGTAACGATTG
AAAGAAGCTTGCCAAGCTTTGGATAATGATGTAACatctgattttttcaa
atttttggataaTGGTACCCAGAACTTAATATTCCTTTGACATGGGGTAC
TGGAACCTTTTGCAATCAATTAAGGGGTTTTCGCCCATATAATTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAATGTCATACATGTTGTTAAAATAAGGAtaccaatttttcat
cattaaaaCAAGTGTATGGTTTCTAATGTTTATTTCAAGTATACTTCATT
GTCTTGGATAACATTGTAACATCAAAACAAGGTCATTTTCAAGATTCTTC
CAAAGGGCCTATTAATTGATGGCGAACATCAAAATCTACNCTTCAGTATA
GAATAGGTTGggttttgaaaaagtcaaaatttttattgccTGCTTGCTGT
GGATAAAAAAGTTACATTATTATCCAGATCTTCTTATACNTTAAACCTGA
TACCTTGTCTCAGGACAGGTGATGAGTTATAAGTTTTAATACAAACTATA
GACAAGACCTTGGAATTGATATAATTGACAATGGATAATTTANAGACATT
GTTACGGAATTATCCACAAAATTTCATTACTTAGATCCCACAAAATCATG
ACTTATTaacaaaaaagtgatttttaccattttttaggGTGTCACAAAAC
TTGACGTTTTTAATGAACATGTCCAAATAAGTAAAAGTGACATTCATTAT
cataaacttttattttatcttaaatGCAGGGTAGAAACTATGATTGACAT
TTTGGAGAAACTGATGAAGCGTGGTNCCTTAGAGTGGATAAAATATTATG
GAGTTTCTACTATATGCCATATATAGTTTCATATAATATACCTTTAATAA
GTTCAATAAAGAGTTattttcagcgatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033265XLOC_033265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052642-exon-scaffold_218-1491911889:753549..753626TCONS_00052642-exon-scaffold_218-1491911889:753549..753626Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1510915933:753549..753626TCONS_00052642-exon-scaffold_218-1510915933:753549..753626Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1575043694:753549..753626TCONS_00052642-exon-scaffold_218-1575043694:753549..753626Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1491911889:753858..753980TCONS_00052642-exon-scaffold_218-1491911889:753858..753980Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1510915933:753858..753980TCONS_00052642-exon-scaffold_218-1510915933:753858..753980Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1575043694:753858..753980TCONS_00052642-exon-scaffold_218-1575043694:753858..753980Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1491911889:754102..754168TCONS_00052642-exon-scaffold_218-1491911889:754102..754168Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1510915933:754102..754168TCONS_00052642-exon-scaffold_218-1510915933:754102..754168Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1575043694:754102..754168TCONS_00052642-exon-scaffold_218-1575043694:754102..754168Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1491911889:755831..755911TCONS_00052642-exon-scaffold_218-1491911889:755831..755911Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1510915933:755831..755911TCONS_00052642-exon-scaffold_218-1510915933:755831..755911Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1575043694:755831..755911TCONS_00052642-exon-scaffold_218-1575043694:755831..755911Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1491911889:757278..757428TCONS_00052642-exon-scaffold_218-1491911889:757278..757428Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1510915933:757278..757428TCONS_00052642-exon-scaffold_218-1510915933:757278..757428Clytia hemisphaericaexon
TCONS_00052642-exon-scaffold_218-1575043694:757278..757428TCONS_00052642-exon-scaffold_218-1575043694:757278..757428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:753549..757428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83643	5.7831	0	0.264095	3.36008	3.20753	3.13971	6.31558	14.169	20.1211	22.9561	9.99627	11.0287	10.3488	9.44814	13.411	10.1473	17.8445	11.5768	11.7852	12.3186	15.9645	14.6078	12.9978	5.92705	4.93942	8.62608	9.64105	19.5517	14.7505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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