TCONS_00052644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052644
Unique NameTCONS_00052644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052644 ID=TCONS_00052644|Name=TCONS_00052644|organism=Clytia hemisphaerica|type=transcript|length=1916bp
GTACACCTTGAATAAGTCCATCTTTTTGGTAGTTATgcTTGTACAGCTCT
TGGAACATCCTGTATCATTGCGGACGTCGAGATGGAGGACATGATTGAAT
GTTTAAACACGTTGAAAACAGCCTTCTCCAAGAAGATTCTCAACAACGAT
CAATTCCATTCAGCATTCGCAAATGCATTAACTGCTTGGTGTTTGATCTT
GTCTGTAGCTGACGATTCGATTGCTTGTGAGCAGATCCAAAATTGTATGG
GGGTGTTGTGTAAACTTTTGGAATTGGGTTCATTGAATTTGAGGATAGCA
GNTTCGCTTTTCCAGTTGTATGGGGGTGTTGTGTAAACTTTTGGAATTGG
GCTCATTGAATTTGAGGATAGCAGCTGGTGAGGCTGCAGCCTTGGTCTAT
GAGCTGGCATACAACAACCGCATGTCACTTCAAGGGCCTGTCAACACTCT
ACATAATCTGCTTCAGGAGTTTGCGAACGAGAGTGGTAGACACAAAGGGA
AACGCGAAAAGAAACAGCAGAAATCCAGTTTCAGAGATATCTTGAAATCA
GTTAAGAGCAATATTCCTCCTGAACAAACCATCAAATTCGGTCCTGAATT
TATTGAGATCGGTTCTTGGTCCTGGTTATTGAGGTATCGCGCATTCAAAG
ACGCTCTTGGACCTGGTACCAACATTCATCTTCAGaccAATCCGTTCGTC
CGTGAAACATTCGATCTGGGACTTCCATTACCTAAAGAATTGAAAGAAAG
CAAAGTGTCCAAGTATGAAAAGCAATTGGTAAATTCAGCTTCATCGAAAG
TGCGGACACAAAAACGAAATCAACGGCGTGACCATAAACACAAAGCAAGT
GGTCTGTGATGACTGAAATACTCTACACGCACCTTTATTGAGAATGGTTC
AACAAATGCAACACGGAATGGAGCAAATCTGCTGAAAAATAATTCTATAG
AGTGATGATTAGTGGTGATGGTGGGTTTGGGCGTGGCGTTGGCGTGAATG
GAAATGATAAGAAAAATTCAGTTTGGAAATACAGCTACTTGTTGGTAAAT
TCAATATTCGAAATGCAAACAGTCATTGCGGCCTCGTTTTCAAAGTATTT
TAACCAAGAAACTTCAACATCATAAGATATACTTTGTTTGTTAGCGTTTT
CGCTTTGCATTTAAATAGATAATGGTCTTTTTGGAATACATTGTAACATG
TTGTGTTAATGTTGCTTGAAGTGATTATTCttttattgttatttatttga
aaacgaggcccgCGATGGTTTTGATACATATCGAGAAAAATGTATTGTTT
TGACACAAGTAGAACAAATATCGGGTTGCCAATAATTGGCTGTCCCTTTA
TCAGCAGATATATGATGAGATTGCTCTACTTTTTAATTGGCTTGAATGAA
TGGTTTTATGGACCGTGattcaaagttaaaaaattcgaTCAAGGATGGAT
GAATAAAGTATTCATTCCCAAAACTCGAAGACTGTATTCGAAGACACACT
ACTATATTCACTGTACTGTattcaatttaaaaagaaaacttcatttctgt
tgagaaaatatctttactAAGAAAACGTTGACATCTGTTTTTTGTTACCA
ATGAGAAAGGAAAAGAAAGGAAACATGATTTCTTAACCAGTTTCTGTGAA
GTTTACAAGGAAAATGGATCGGTATGTCTGTataacattgagtttaaagc
ctcgAAGGGACTAGAGAtgaaactcttggatgggaaatgaagccacatCT
CCCAACCAAAACGCTTGATCTTTGTCGTTTTCGCACAAATGCTAgctaaa
ttgaaaataaaatcaatatacCGCGAGAGACAAAGAAAATGCTATATTCA
TACCGTCATTCCAAAAGCGGCGCAAATCTTCACTCTCTTTCTTACTTTAG
AAAAGTCGAAGATTCC
Run BLAST on NCBI

transcript from alignment at scaffold_218:759315..769349+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052644 ID=TCONS_00052644|Name=TCONS_00052644|organism=Clytia hemisphaerica|type=transcript|length=10035bp|location=Sequence derived from alignment at scaffold_218:759315..769349+ (Clytia hemisphaerica)
GTACACCTTGAATAAGTCCATCTTTTTGGTAGTTATGTTAGTACAATTGT
TTCAAATCCTTGGACTCGCTTCATTTTTATGTCtacaaaactattttttt
ttcgttgtGAAACCGTTGTTGTTGCTGCTTCGCAGGGTAACCTCGATTTT
CTGTCTTCGAATTTCCATAAGTGACACCATCAACCCTCGAGTGGATCTTG
TAATGTCATAAATAAAACTGAAGGCGGTGTACAGTTTCAAAGTGTTTTGG
TCTGTCGGCTTGTCTATGGGGTTTTGTATCAAACCGATTCCTTCGGTGAT
TCCGAGTATCAAAGCCAATCTGATGCAAATATTACGAACTTTAACCTGAT
TCTTGATGTTTCGGAAAGCCGCTCTAGTACGTTTGTAAGTTTTGTGAATG
ATGCGCGCGATGACGACAAGGGTGAAAATGCAGGAGAAGTAAGAGATGGT
TGCAGGTACGTAATAAGCGAAAATGCGGGCCGAGGAATCACCAATCCAAC
AAGTTTGGACGCCATAAGAAAACTCATATACTTTGGTCTCATTGAGAACT
ATAGCAAAGATGACGAGGAGAGTTGTGACAGATATGCACTTCATAAACGA
ACGTGTTGCTCTTTGCCTGATCCCTCTTTGATTCAATCGTTCGATAGTCA
AGGTGGTAAAAGCTCTGGCGATGGTGAAGCTTATGTATGCTGTCCATGAA
GCAATGTTTAAGAGACTCCAGTGTAAGGCTATGCTAAACCATTTACAAAT
CTGAGTGTTCAGTTCCACCAggattgaaacaatgaaaatgagaTCGGATA
AAAGAAGTAGGAAAATAAGTGCCGTGATGTTGAAGGTGCCAGTATTAAAG
CGTTTCTTGTTTGATCGAAAGTAATATCTGATATTGACAGTATAAGACAA
TAAACTAATGGTCGTTCCTGAGATGGAGGTTATATGTTGCGCTTTTCTTA
CACTTTTCATCCAATAACTTTGAGTATCTTGCTCATTGATGCAAATTTGT
ACACCATTCATCGTTGGGAAATATTCCCATGCTTTTAGAAACTGTCCGGT
CTTTAGTATTTTAATTGAAAGATCTTTATTACTTTGGTCATATTCTGAAT
GGTTAAGCTCAGTGCGTAAACAATCACTTTGTAAATGATATTCAGTTTGC
TGGCAATAATACGTGTTGAGTGTAAGATCCATTTTCTCGTAAACAATTTC
CACAACGCTGTGTTGAAAATCTTTGAGGTTGGTTCTCCTCAAGGTCAACT
CTTCACATATGCAATTTGGTTTTTCTGTAAGCTGTTGTCTTGCAAACAAA
ACCATGGGACCTGTACAAAGTCCTTTACTTGTGAACTGATTGACACTAAG
CATGTGAAGTTTAGAGACGTGAAATTGTGATGTTGTGGCAAGAATTGTCA
TAGTAGGTGAATAATTGTGAGACATTACTATACTGAGTGCTGTTTCATTG
AAAGGCATTTCATACAGGCTGGTCGAAGCATTCGTAAACACTAAGGAGTA
ATTCTCGAAAGTATTCAAAAGGTCTTGCCTGTCTTTAGCAATCGTAGGTT
GTTCTTTGAAAACGAAATATTGTCGATAAGTACATGTTTTCGGACAACTA
CTACTGTCGCCAATAGAAatgattttattctttttgcAACGGTGATCAAT
GATAGTGTATCCCGGACCACATTTATACGGGACACAAGATGCAAGTTGCA
TGTCAAAAACCATATTTTCTGGACAACCTGCCActaagttttgaaaatag
ttAAGCGTCAACGTCTTTGACCAAGACCTTCCCAATTGGCGTATGTCCAT
GAAGTTGCAATGTCTGCAAAACACATTTTTGAATATCTGTCTTTTCGTTG
GATTAGTATCCATGGTGGTAAAATTATCCATGAAATAATGACAAAGATTT
ATATGGGCTTTGCTGCACGCTGTGTCTTTACAAGTCCTATCATATCGACC
CTCGTCTGCTTGCAGATTTATTTGACATTTGGAGAATTTCTTCTCAAGGT
ATCTTTGTAATGATCCATCTTTGAATTCATCAGAACATGTTACATTTATG
TCGACTTCTTTGAAATTCAGAATTCCATTGCAAAGCGCGCAATGCTTGTT
TCGATACAAGAGATCGTTAATTCCCATCACCGGTAGTGTTtgtatgacgt
catcaactccCTCAAACTTATCCCCTTCGCATTTTCCAATCAACCAATGG
TCGTCTCTTAATAAACACTGATCAACCATGACgaaagaaaagtcaaaaag
aacTCTATGGCACGCCATTTGTCGATGTAGAGGTCTTGCTAGTAGTCGTT
CTGTGTATGCACTCATACTGACGGGCTTTTCTGGATCCCATAGATAATCA
TAACAACACCTTCGCTCTTCAGAACAATGTTCTTTATCACAACTACACGT
TCTGTACGGGGAAGTAGTGGAGGTGCACAGGTTATTACGCGGCTCCTCGT
CACCGGTACGAAAATTAACGTTCTGGTGCTTGAAAAAATCAATCAGCGGA
AAAGAAATGTTATTCCTGTTGTCGCCATAAATGCCTATAAGAGATACTAG
AAATATCATCGACTGGCCAATTAATGGTCTCCAATACATCCTATAATTCA
CTGCGGAATTCTTGCTGCTTGATGCTCTCCCATCAGTATAAACACCCCTA
CTAGAGATTTTGATTAAcccaaattttcaatatttcttcttttattgaGT
ATTGTTGTCTCTTTCCTCCTTTCACTTGGACTAAAGACAAAATTTTATCA
GATGATTATTTCGTATTGTTTTGCTTTGAAACTAATTTCAGACACCGATA
CGGTTGATGAACtgcttttattttttctaattaaaTGATAAGGGTAATTT
GTTTTGCTATGAAAACCCACGATAATAATGTGGCTTTCCACAGTTTCCCA
TTTTAAATCCTCTTCCGTGATAAAACTAATTGTTTTCtcttggaaaaaat
gaaaagctcttttttgtcaatttcaagGTCCTCTTACTTTATATACAGTT
TTCTTAATTCTTTTATTCTCTCTATAAAACTTGCAACAAAGAAATGGACA
TATTGAAAATTACTGCTACCCAGGACTTGTTGAAAGCTGCGAGTTGTTTG
ACAGTCTGAGATAACATGtagatttttgtcgaaaatccTTTCATATTGCT
TCATGTTTCGATCATTTTAGGTCACTGATAGAAATGACAGAGTGTTTGCA
AAATGAATGTGATAGTTATGAAGGAAAATTATATATTGCCTTTTTTGAGA
ACTTCTAATTCTAAacgatttttatattttataacgTTTTCAACTCTTTG
ATTAGCTGCCGTAGCATATACAGGCACATTCTTTAGATTAGTAAGTAAAT
CTTGTTATCACAGTCAAATATAACCAGAAGGTTAGATAGGGGAGAGCGtc
actttttttcatttgaatgcTCCGATTACCATAGTTCATTGTCTTTAAAT
GCTAAGCATTCAGCGTATGGGCCGGCCCACAACCTGGAGTACTGTAGCTG
AATACTCTACCTTTACACTTCAGCCACTAGGACTGAAAGCGTATGGCGAC
GAGAAGATAGAACAAAGTCTACAAAGTGAATAACCCTTGCAATATTGCTT
TTAAAAGCTCTTGTTTCTTTGTTAAGAAAATGTGCTAtctttggaagatt
gtttttaATCATTCAGAATACTTTCAGAATTCTCTTTCTAATCCCTTTAA
GTTTGAAGAGATAAAATTATTTGGTTTTCCTATTCGGTCAGTATTTCCTA
ATCAGTTTTCTATCTTTCGAACCAGAAGAACGCGttaaattgaaagtttt
ttctcGCATTCCGTCTAATTGAAAATGCAATTCCTAGATTAAAAACTGAT
AACAAACTCCGGAAAAGAATTAAATTAAAGATCCGTACGATTTGATAACT
GCTCCTAGTCATCATCCAGTCTGGAAATGGTGCACAGTAGGCCGAATATA
TTCGGAGTGCGGAGTGAGGCAGTAATTACTTTTGGGGTATTGGCGTAAGG
AGTGGatataaagtaaaatatttGCGTAAATCAAACCTTTTCAAGACGAG
AGGCACATCGCCACTCTAACGCCCGATTTCATTACGCCAGGTTTAAGCGC
ATCCACGCGCATCCATCAAAGCGGAACTTTTGTATACATACCaaaccatt
tttcatgcccttttagcgtcCGGATATCGGACGCTGTCCTTCAAGAAATA
GCCCTTTTTATGAGAAATCAGCAGAAGAAGTGCCCTTTTTTGGTTATAAT
AGCAGACGCTATCCTGCCTTTCTAGAATTTGGCCtgcatacttaggctca
aattcggcaaaaaataagcataatgctaagcatacctccaagctgaaatg
cGAAAAATTCGTGCGATATTTTTCTTCGTCACTTTATTAGATTGGTGGAA
CATTTTGTAGAACAATGCGTTtgataatagacgatatcggctttccgaat
tctccccgaatgattacccatgatgcattgcgcaaaaaaatccACGGACG
ATATCGACTTTCCGTGAATTTATTTGTGCAATGCATcgtgggtaatcatt
cggggaaaattcggaaagccgatattaTATATTCTGcagagtcaaaatca
aaatttattttcccaAGACTTTTTTAAAGGATTAACTTCGTTTTTTCTCT
GCATTAAATGGATttattttatcttcaaattctcgACGCCCTTCCAAAAT
GAATCGGAGTAATAATAAGCTAATTGTTACCAATCTTCCCTTAACTGGCT
GTTACCCTTCCTTGATCACAAAGTTTTAAGATCcgttaaatattttttag
gcTTGTACAGCTCTTGGAACATCCTGTATCATTGCGGACGTCGAGATGGA
GGTCAGTAAACTAAACTCTGTTAGCTTTATAGCTCAAAAGCCGGGCTTAT
CTTAATTTATTGATCAAATAATAGAGTAGAAAGGTTTTTGCACCAGGGCA
CTTTACAGACTCAATCCCTAATTACCCAATGGTGTATCGACGACTGAAGT
TTTACTATTACGGAATAGGATTCatacttttcctcaaaattgTAGTTTGG
GCCGAATATCCCACAAGTTAATGGCTGTTTGGAGAAATTAGGAGGTTAGG
AGAAATTTCGTAATCCAAACCTgacagatgttgaaaattttctcgcTCCT
CAGTAGATGTCGTCTTAAGGAAAATTTACTGAATTATTATGAGAGGTCTT
GTCCATAGAAGTTAGAGAAATCATATTAGGTTATAGAACTAAGCCAGTGC
AACGAGTATCAGAAACGATACACCAACAagctagaaaaaaatatatttga
aatttgttttcgtCCGAACCTAGGACATGATTGAATGTTTAAACACGTTG
AAAACAGCCTTCTCCAAGAAGATTCTCAACAACGATCAATTCCATTCAGC
ATTCGCAAATGCATTAACTGCTTGGTGTTTGATCTTGTCTGTAGCTGACG
ATTCGATTGCTTGTGAGCAGATCCAAAAGTAAGTTCAATATAAGTAAGAA
ATACTGTTTGTTTTAAAGTTAGTGCTGTATACTTAAAAGGGGATGGTGGT
CCCTGAGCCAATGAATTTTGTCATGGAAATCATTTAAGTATCCTGCGTCA
GTACTCCTTAATGCATTGATGCTGGCTATGTTCAATCTTACCTGAGCGAG
ATAGATACTGTATTGCTATTTAACTGAGCTTAAGTTTTGAGCAGCAATGG
TGTAAGAGTGTGCAGTACGCAGTGCTGATGAGTCCCAATAAGGAcaaaat
gcatatgctgctctgccacccaatctcctgaaagaagataatTTTTTACC
AAATCTCTTCGCTTTTCCAGTTGTATGGGGGTGTTGTGTAAACTTTTGGA
ATTGGGTTCATTGAATTTGAGGATAGCAGNTTCGCTTTTCCAGTTGTATG
GGGGTGTTGTGTAAACTTTTGGAATTGGGCTCATTGAATTTGAGGATAGC
AGCTGGTGAGGCTGCAGCCTTGGTCTATGAGCTGGCATACAACAACCGCA
TGTCACTTCAAGGGCCTGTCAACACTCTACATAATCTGCTTCAGGAGTTT
GCGAACGAGAGTGGTAGACACAAAGGGAAACGCGAAAAGAAACAGCAGAA
ATCCAGTTTCAGAGATATCTTGAAATCAGTTAAGGTATGCTGAATTTTCT
TTTGCGTGCTTATAATTACGTCTGTCTGGTCTGAATAAAGATGAATATTT
ggtttttcttcttattttgaaattttttattttttggacctaccccggtg
gaggtcctataaattaacctttgtccgttcgtccgttcgttcgttagtta
ttagctttcctcatgattggctcgttNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtagcttttctcgagattggctctttcattctttacgatttttt
gcacaaagatgcataactataaaccctcgaatgtgacggagcccgatttt
tggaaaaaaaattttgggcaaatttgggccaaaaaacggctaaaaaatgt
gttttttggactttgtgaaaaattggatcattagttttatgatttttttc
ataggtaaaagatggttcaaacagatttttgcaaaaaaattttgttggct
caaaaaacgcatgtttatctataagaatcactattaataagcatacatca
atgttcttgaaattactgaattttttgatgagatatttttttgctctcaa
agtcttgaatatgaaagagcatgaaactttggtttctaaacgtgtttttt
tataagaaacaaacaactaattttaatagatcgtcactatttgtgttctg
aatgattgtttaatggtcacgcttatgtagatatcaattatatatgtgtt
aaatgcataaccaggttggtccataaaagtatcacttgtttatttaTGTA
ATATACCAAAACAAATTGACACTCACTGATCCGAAGATTCCATTACAGTT
ATAATATCTCGGTAAACCTACCGTTTGAGTCAACTGTCCTTCGATATTGA
TCGTCTTCAGATGGATTCATTTAtttcttgtttctttctttaGAGCAATA
TTCCTCCTGAACAAACCATCAAATTCGGTCCTGAATTTATTGAGATCGGT
TCTTGGTCCTGGTAAGTTATGATTTTTACCGTCTTTTCTCTCATAATTTT
GCTATGGGCAAAGTTAAGGTTTTGTCAGGTTACACGTGAAACATAACTGA
AGAGTTAGTTTAAAGAATGTCATTGTTGAGGTTTTGCTATCCCTCCTTTT
TTTTAAGACATAGGGGTTATTTCATGTATTTCTATTATCCGTAATAAACC
CGTTTGACCAGTTTGAGCACAGAGAACGGGTTGTAATTTCAACTTATCAT
TTTATTTCAGGTTATTGAGGTATCGCGCATTCAAAGACGCTCTTGGACCT
GGTACCAACATTCATCTTCAGGTAAATAGGAATTTGTATCGCTatcaaga
aaaatcttttaatattataaaataactttaatAGCCATTCTAGAAATATT
TCTGCGCCAATTTAGTGTCAATAGAGGTAACAACTTCATATACTTTAAGG
TCCCTTATAGTAGAGGAGTCCaataaaaagggggggggtctgaataagAG
AGGTTCTGAAATTGTACCTCTTAAACCcccctaaaaattaattataagCT
AAAActaggctatttagagcaataCAGCTTgtgatagctgaaaatatttt
caaaaataaataacatattattataatatttttccgagATTAATAAGCGG
AGCCTggagacgttaatttttagagCAGTATGTTTTACCTTCTTACTTCT
GTTTATGAATCATCGACTGACTTGTCTTTCTGAAAATTAATcctaatatc
aaaataaaatcctTCCTTTGGTGTAATAATTTCcaatctatttttatttt
agaccAATCCGTTCGTCCGTGAAACATTCGATCTGGGACTTCCATTACCT
AAAGAATTGAAAGAAAGCAAAGTGTCCAAGTATGAAAAGGTATCTGAGTT
GATTTGAAATACCAATGGTATGCTGATCTCTTCCtcgattcatgatatgc
accactggagagtctccTCAGAACCtttgaaattttccacccaatacgcc
acttaaacaatagaaaaactgacgtattgggtggaattttttgaaaattc
ttgaaaggCTATCCAGTGGTGCTAGATGATttagttttttgaatttcttc
aatCTGTTGCTGTGATTTTTGTCgagaattttatttcaaaaccaaGCATA
CTGAAAAGATAGATCTTTAAAAGAGCTTTCCAATAAACCTGGATTTGACC
TAGTTTGCActtctaaaaaatgagaaacaaagcctttatcaattttttat
ttttttggttgTCGCGTTGTCTTCTTCGGCAAGAGAAACAAATCGAGTGC
TCATTTTATTATAAATTATATTCCCATTCTTTCCTTATTAGCAATTGGTA
AATTCAGCTTCATCGAAAGTGCGGACACAAAAACGAAATCAACGGCGTGA
CCATAAACACAAAGCAAGTGGTCTGTGATGACTGAAATACTCTACACGCA
CCTTTATTGAGAATGGTTCAACAAATGCAACACGGAATGGAGCAAATCTG
CTGAAAAATAATTCTATAGAGTGATGATTAGTGGTGATGGTGGGTTTGGG
CGTGGCGTTGGCGTGAATGGAAATGATAAGAAAAATTCAGTTTGGAAATA
CAGCTACTTGTTGGTAAATTCAATATTCGAAATGCAAACAGTCATTGCGG
CCTCGTTTTCAAAGTATTTTAACCAAGAAACTTCAACATCATAAGATATA
CTTTGTTTGTTAGCGTTTTCGCTTTGCATTTAAATAGATAATGGTCTTTT
TGGAATACATTGTAACATGTTGTGTTAATGTTGCTTGAAGTGATTATTCt
tttattgttatttatttgaaaacgaggcccgCGATGGTTTTGATACATAT
CGAGAAAAATGTATTGTTTTGACACAAGTAGAACAAATATCGGGTTGCCA
ATAATTGGCTGTCCCTTTATCAGCAGATATATGATGAGATTGCTCTACTT
TTTAATTGGCTTGAATGAATGGTTTTATGGACCGTGattcaaagttaaaa
aattcgaTCAAGGATGGATGAATAAAGTATTCATTCCCAAAACTCGAAGA
CTGTATTCGAAGACACACTACTATATTCACTGTACTGTattcaatttaaa
aagaaaacttcatttctgttgagaaaatatctttactAAGAAAACGTTGA
CATCTGTTTTTTGTTACCAATGAGAAAGGAAAAGAAAGGAAACATGATTT
CTTAACCAGTTTCTGTGAAGTTTACAAGGAAAATGGATCGGTATGTCTGT
ataacattgagtttaaagcctcgAAGGGACTAGAGAtgaaactcttggat
gggaaatgaagccacatCTCCCAACCAAAACGCTTGATCTTTGTCGTTTT
CGCACAAATGCTAgctaaattgaaaataaaatcaatatacCGCGAGAGAC
AAAGAAAATGCTATATTCATACCGTCATTCCAAAAGCGGCGCAAATCTTC
ACTCTCTTTCTTACTTTAGAAAAGTCGAAGATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033266XLOC_033266Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052644-exon-scaffold_218-1491911889:759315..759350TCONS_00052644-exon-scaffold_218-1491911889:759315..759350Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:759315..759350TCONS_00052644-exon-scaffold_218-1510915933:759315..759350Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:759315..759350TCONS_00052644-exon-scaffold_218-1575043694:759315..759350Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:764115..764165TCONS_00052644-exon-scaffold_218-1491911889:764115..764165Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:764115..764165TCONS_00052644-exon-scaffold_218-1510915933:764115..764165Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:764115..764165TCONS_00052644-exon-scaffold_218-1575043694:764115..764165Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:764638..764792TCONS_00052644-exon-scaffold_218-1491911889:764638..764792Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:764638..764792TCONS_00052644-exon-scaffold_218-1510915933:764638..764792Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:764638..764792TCONS_00052644-exon-scaffold_218-1575043694:764638..764792Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:765135..765448TCONS_00052644-exon-scaffold_218-1491911889:765135..765448Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:765135..765448TCONS_00052644-exon-scaffold_218-1510915933:765135..765448Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:765135..765448TCONS_00052644-exon-scaffold_218-1575043694:765135..765448Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:766808..766875TCONS_00052644-exon-scaffold_218-1491911889:766808..766875Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:766808..766875TCONS_00052644-exon-scaffold_218-1510915933:766808..766875Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:766808..766875TCONS_00052644-exon-scaffold_218-1575043694:766808..766875Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:767125..767185TCONS_00052644-exon-scaffold_218-1491911889:767125..767185Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:767125..767185TCONS_00052644-exon-scaffold_218-1510915933:767125..767185Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:767125..767185TCONS_00052644-exon-scaffold_218-1575043694:767125..767185Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:767667..767753TCONS_00052644-exon-scaffold_218-1491911889:767667..767753Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:767667..767753TCONS_00052644-exon-scaffold_218-1510915933:767667..767753Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:767667..767753TCONS_00052644-exon-scaffold_218-1575043694:767667..767753Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1491911889:768206..769349TCONS_00052644-exon-scaffold_218-1491911889:768206..769349Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1510915933:768206..769349TCONS_00052644-exon-scaffold_218-1510915933:768206..769349Clytia hemisphaericaexon
TCONS_00052644-exon-scaffold_218-1575043694:768206..769349TCONS_00052644-exon-scaffold_218-1575043694:768206..769349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:759315..769349 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.42998	0	1.41194	0.538353	8.52011	10.8759	11.8717	12.284	20.7488	25.2083	23.8988	14.516	15.6027	15.7904	8.8309	9.18073	13.1341	10.0965	5.16625	10.2716	7.98811	11.689	5.57234	10.1321	17.741	13.5049	10.6624	9.2456	5.39418	8.79331
Blast
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BLAST of TCONS_00052644 vs. Swiss-Prot (Human)
Match: IFRD1 (Interferon-related developmental regulator 1 OS=Homo sapiens GN=IFRD1 PE=1 SV=4)

HSP 1 Score: 131.339 bits (329), Expect = 1.146e-32
Identity = 68/171 (39.77%), Postives = 104/171 (60.82%), Query Frame = 2 
Query:  338 LLELGSLNLRIAAGEAAALVYELAYNNRMSL-QGPVNTLHNLLQEFANESGRHKGKREKKQQKSSFRDILKSVKSNIPPEQTIKFGPEFIEIGSWSWLLRYRAFKDALGPGTNIHLQTNPFVRETFDLGLPL---PKELKESKVSKYEKQLVNSASSKVRTQKRNQRRDHK 838
            LL    +N+RIAAGE+ AL++ELA           + +L  +L+  A +  +H+ K +K++Q+S FRD+L++V+    P +TIKFGPE + I  W     Y  FK+ LG G   HLQ+N F+R  F+LG P+      LK  K+S++E+ L NSA+ K RT+ R++ RD +
Sbjct:  274 LLSCDDVNMRIAAGESLALLFELARGIESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLYNSAAFKARTKARSKCRDKR 444
The following BLAST results are available for this feature:
BLAST of TCONS_00052644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFRD11.146e-3239.77Interferon-related developmental regulator 1 OS=Ho... [more]
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