TCONS_00052730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052730
Unique NameTCONS_00052730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052730 ID=TCONS_00052730|Name=TCONS_00052730|organism=Clytia hemisphaerica|type=transcript|length=3820bp
ttagggTATAATTGGCAAAGTCACAAATTTGATTGTCCCAACATGGATTA
GTAGCTGGTGGAAACCTGATCTAGCCTCAAAAAATGATGGAAGTGAATCA
GCTGATTCAACAGATGAGGAAGTTGGGGATGTTGAACAAACTCTTTCAAA
TGGAATTACTCCGCACATCAAAACCGAAACCTTAGTTCAAGACCACTCAT
TCAAACCAACTCAACCTAAAATTTCAGTGAGCAGTCAAAAAGAATTTCTC
TTGTCAAATCGAAATTCAACAACACAATCTGAAACCTTCTCACTTTCAAC
CAAATATACTAACTCTACAGAAGCAACAACAAAGAGCATCGAAATTTCTG
ACACTGAAGAGAATCAGCAACAAAACCCAGTAGCTGAGGAACCAGCTAAA
ACCTCGTTCTATACAAATTTACGTAGCCAGAGGGGACAACCATTACCATC
TAAACCAGCATTTAAAGTGTCTGCTTTTGTGTCGCCACTCAATCAATCTA
CAGCATCTACAAATGTCTCGTTCAATTCGTCACTCAATGCATCCTCATTC
GATTTCTCTATGTCTCGATCACCATTTTATACTGGTGGTACAACCTTTGG
TGGTGCTAATTCGTATCGTGAAACATCTGGTAAAAGGATGAAATTATCGC
CAGTCTCCAATCGAGTACGAACAACAAGGACACTGATGAAAGCGAAGCCA
CTTCCAAATACTAAGAAAAACATTGTTACAAGTCAGACTGCTAAGCGTAT
TTTAAATACTCTTGGAAAGATGTCATCGCCGGTGAAAGATTCAAAGAGAA
TCCCACGGTCAGTTTTTACCAAACCTGCATTGAGCGAACTTGTCAAAAAC
CAAGCAAAAGTTGTGAGTCGGCAATCTGAATCAGTTGCTCCACCTGTAAG
CTCTTTGAATAAACCTTTAAAAATTGTTAGCAAAccagaaaactttcaaa
acaagatgGATTCTATTCGAAGGTTCAATCAGAAATCTGAGGTAAAAACT
CAACCAGCACAAGTACCATCGTTTTCATTCAAACAACAAACTGTTCCTCC
GTTGGTTGCACCACCTAAGCAAGAGATAAAGATCCAACAACCTCCCAAGT
TACCCACGGCTGAACCTTCCAAGTCTAGCATGAAAATAAAACGAGATAAA
ATGACCTCCCATTTCACCATGGCTAAAGAACCAGAAGTAGTTAACAGTAT
GCCAGAAATTACATCTACTGCAGCTCCATTACCCATCACTGTCATGCCCA
CATTCAACTTTGCAAAAAGTgctttagaaaaacaaaaagccAGTAACATA
TTTTCACCGTCCTTGAACGTTACTCCCATTCTAaaaccaacacaagaaaa
acaGCAAGAGATAAAAACCAAAATCGAGCCACCAATACCGTTTGAAATCC
CTAAATCTGTAGAGGTGACAAAATCAACCGATGGGTTTACCTTTGCTACG
CCAGAAGTTAAAGGAACCAAATCGTTTTCGACACCTCTCTTAAAAGACTT
TGTGTTTAGTACACCTGTTAACCTTGCTAATAAAGCTAAGGCGACTTCTG
ATATACCAAAACCAACTGCAAAGATAGAAAAACTTGTTGTTTCGACCCAA
CCNACCAAATCGTTTTCGACACCTCTCTTAAAAGACTTTGTGTTTAGTAC
ACCTGTTAACCTTGCTAATAAAGCTAAGGCGACTTCTGATATACCAAAAC
CAACTGCAAAGATAGAAAAACTTGTTGTTTCGACCCAACCACCAATAAAA
CCATCTCCAGCACCTGTGATAGAACAGATCGTTAAACCGTCCACAACAAT
TAAACCTTTCAAAgaactaaagcaaaacaatgatAATGCAACTTGGAGTT
GTCCAACTTGTATGATAGACAATGAAACAACTGATTTGAAATGTGTTGCG
TGCGAGACAGCAAAACCTGGATTGGCTTCAGTAGCTTCCACTGTTAAGTC
ATCGGCAAAACCAACTTTCGAAATCAAACcattaaaaaatctttcaaagc
cTATAGAAGATTGGAATTGCCCAACTTGTATGATTGATAATTCAAATGAC
GATTTAAAATGTGTAGCTTGTGAAACTGCAAAACCAGGTTCTAAGTCTGT
GTCATCAGAAACTTCGTTTAGCGGCTTTGGGAAATTGTCAGAAACTGGAG
TCAAGCTACCTACCGATACTGGCTTTAAATTTAATAGTGTTAGTACAACT
GGGTTTAAATTTGGTAATGATAATTCTAGTGGTTTTAAATTCAATTCAGA
TAGCACCACGACAGGGTTTAAATTCCAATCAACGGAGAACACTGGGTTTA
AATTTGGTAATGATAATTCTAGTGGTTTTAAATTCAATTCAGATAGCACC
ACGACAGGGTTTAAATTCCAATCAACGGAGAACACTGGGTTTAAATTTCC
CACAAAAAGCGTAGACGAACCATTCAAAGGTGATGCAAGTGCCGAGAAGA
AAACTACTGAAGTTTCCGAACCTTCAAAAACAAACAACTTATTTGGTAAT
AGTGCACCTTCATTTTCGTTTGGTAAACCCACTGAGACTGAAAAAGCTCC
ATCATTCGCATTTGGTAAACCATCAGAGACTGAAAAAGCTCCATCGTTTT
CTTTTGGGAAGCCAACAGCTACGGAAAAAGCTCCCTCGTTTTCGTTTGGT
AAATCGACTGATAATGAGAAGGCTTTATCGATTTTGAGTAGTTCGACATC
CAACGAGCCAGCAGAAGTAGAAACACCAAAACCTGCGTTCGGGTCGATTG
CTGCAGCCGCTGCGGGAGGTTTTCTGAAAGTCACTGGTTCATCATCAGTA
CCATTTGAGCCAACAATTACTAAAACAGACCCACCAAAATCAACAGGGTT
TGCATTCGGACAAGCATCGTCCCAATCTGTTTTCGGAAGCACTTCTTCAT
CCCAATCAGTGCTTGGTTCAACCTCCAAAAGTGAATCCCAGCCACCTGCA
CCATCTTTCAACTTTGGTCAAACCAAATCTTCAACAACAAGTTTTGGTTC
AACATCCTCAGTTTTCGGGCAAGCTTCAACCGGTTCAGTATTTGGTACTC
CCGTTCAAAGCGACTCGCAATCAGCCGCTCCATCATTCAATTTCGGTCAA
AGTGTTACACCTGCTTTTAACTTTGGAGCTACCCAAGAGAAGAAAGAACC
TCAGAAAACATCTCTTCCCAGCTTCGGATCCAGCCAACCAACCGAATCAT
TGTTTGGAGCAAAGAAACCTGAAGCTTCTGCTCAACCACCATTCAACTTT
GCAGCACCATCCAAACCTGAATCTGCGCCAGTATTTGGATCAGCTCCAAC
CCAACCGGCAGCTTCTTTCAACTTCGGTGCTTCCTCGACCGTACCATCGT
TTGAGACCAAACCGTCAGGCTTCATTTTGTCAGCGAATAACAGTGCAAAC
CCTACTGTTAGTCAACCGCCTGCTCCATCAGGAGGATTCAATTTCTCTGC
ACCAAATGCATCCTTTAGTTTCGGCGCGACGACCACGAACGGAGCAAGCG
ATGCTCTAAAAACTGGTAGCGTTTTCGGACAACAGAACACTTTTGGTGCA
TCTAATACAGGAAATCTTTTCGCAATCGGTCAAGGTAGTAATAATAGTAA
CAATACATCTAGTGGACCAATGAAAAACAGACAAATCCGTAAAGCTGTAA
GACGGAAGAAGCCGGTTTAAATATTAGTTAACtttagtttttatattttg
attttattaacaGTACGTTCTTGTTGGTATGGCTATTCATATGCTTACTC
TACACTACTGGATTTAAAAACTTCTTTAGAAATTCTGTGAATAGAATGAC
GATGAATGACTTTAGGCGTA
Run BLAST on NCBI

protein sequence of TCONS_00052730-protein

>TCONS_00052730-protein ID=TCONS_00052730-protein|Name=TCONS_00052730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1036bp
MSRSPFYTGGTTFGGANSYRETSGKRMKLSPVSNRVRTTRTLMKAKPLPN
TKKNIVTSQTAKRILNTLGKMSSPVKDSKRIPRSVFTKPALSELVKNQAK
VVSRQSESVAPPVSSLNKPLKIVSKPENFQNKMDSIRRFNQKSEVKTQPA
QVPSFSFKQQTVPPLVAPPKQEIKIQQPPKLPTAEPSKSSMKIKRDKMTS
HFTMAKEPEVVNSMPEITSTAAPLPITVMPTFNFAKSALEKQKASNIFSP
SLNVTPILKPTQEKQQEIKTKIEPPIPFEIPKSVEVTKSTDGFTFATPEV
KGTKSFSTPLLKDFVFSTPVNLANKAKATSDIPKPTAKIEKLVVSTQXTK
SFSTPLLKDFVFSTPVNLANKAKATSDIPKPTAKIEKLVVSTQPPIKPSP
APVIEQIVKPSTTIKPFKELKQNNDNATWSCPTCMIDNETTDLKCVACET
AKPGLASVASTVKSSAKPTFEIKPLKNLSKPIEDWNCPTCMIDNSNDDLK
CVACETAKPGSKSVSSETSFSGFGKLSETGVKLPTDTGFKFNSVSTTGFK
FGNDNSSGFKFNSDSTTTGFKFQSTENTGFKFGNDNSSGFKFNSDSTTTG
FKFQSTENTGFKFPTKSVDEPFKGDASAEKKTTEVSEPSKTNNLFGNSAP
SFSFGKPTETEKAPSFAFGKPSETEKAPSFSFGKPTATEKAPSFSFGKST
DNEKALSILSSSTSNEPAEVETPKPAFGSIAAAAAGGFLKVTGSSSVPFE
PTITKTDPPKSTGFAFGQASSQSVFGSTSSSQSVLGSTSKSESQPPAPSF
NFGQTKSSTTSFGSTSSVFGQASTGSVFGTPVQSDSQSAAPSFNFGQSVT
PAFNFGATQEKKEPQKTSLPSFGSSQPTESLFGAKKPEASAQPPFNFAAP
SKPESAPVFGSAPTQPAASFNFGASSTVPSFETKPSGFILSANNSANPTV
SQPPAPSGGFNFSAPNASFSFGATTTNGASDALKTGSVFGQQNTFGASNT
GNLFAIGQGSNNSNNTSSGPMKNRQIRKAVRRKKPV
Run BLAST on NCBI

transcript from alignment at scaffold_219:78400..83117+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052730 ID=TCONS_00052730|Name=TCONS_00052730|organism=Clytia hemisphaerica|type=transcript|length=4718bp|location=Sequence derived from alignment at scaffold_219:78400..83117+ (Clytia hemisphaerica)
ttagggTATAATTGGCAAAGTCACAAATTTGATTGTCCCAACATGGATTA GTAGCTGGTGGAAACCTGATCTAGCCTCAAAAGTAAGTTTAGATCATATT ATGTTTTTCATTCTGACAAGCCAATTTGGATACTGGTTTGTTGGATCAGG CAGCTCTGGCAAATTACGTTAATTAATGTGTTGCACTCAACTTTTGATAA AGTAAAAAGATGATTGTTGATAAAATGGGACTTTCAAATCAAGAGCTATG GGTACTTAATATTAAATTTCGGTTTATATCTACCTAATATTAAATGTTTT TCCATACCATCAAATTACTTTTTGAGGTGTGTGAATTCTCCGAGATGGTT GATTGGATTGGACTTCATAGGATACCTAATCACACGACCTTAATTCTAAA GCCAGGATTTTTCTAATTGACAAAGCCTGATTTTTTATAATACAAAAGCT CTCTTTTGAAGACATAAGGAAAGTttcaaaaagataaataaaattttaca attttataaaGAGAAAAACCAGACTTTGTACCTTTTCTGCAAGCTACATG TTTCCTAATTATAAGCCTCATTCTGAAAgcttttcaaaaccttttttgca TATGCTTAAAGACACAAGTTTTACATGCTTTAGATGTATGATTTTCAAGA TTATGGGGTTAGAACTAAAAGGCAAAGGTGATCAAATCTAATGATGACAT ACCTTaattgtaattaaaaaaagCTGAACTTTGCTCGCTTGTGTTTGATT TTGGGGGTATTGAGGCTGGGTTGTCAAGGTGATTATTGAAAAAGATTATT CTTTTTATGATGTAGAAAGGAGACACAACTCTGTGATGAcaaagcaaaat aaacaaaagaatttctcaaattttgtgtGGGAACAAGTTGTGTTTAGAac tgctgtgtaagcaaatttTAAGGGGTACATTAAATGATGTTATTTAAATg cttttaaattttatcaattttctaatTCAGAATGATGGAAGTGAATCAGC TGATTCAACAGATGAGGAAGTTGGGGATGTTGAACAAACTCTTTCAAATG GAATTACTCCGCACATCAAAACCGAAACCTTAGTTCAAGACCACTCATTC AAACCAACTCAACCTAAAATTTCAGTGAGCAGTCAAAAAGAATTTCTCTT GTCAAATCGAAATTCAACAACACAATCTGAAACCTTCTCACTTTCAACCA AATATACTAACTCTACAGAAGCAACAACAAAGAGCATCGAAATTTCTGAC ACTGAAGAGAATCAGCAACAAAACCCAGTAGCTGAGGAACCAGCTAAAAC CTCGTTCTATACAAATTTACGTAGCCAGAGGGGACAACCATTACCATCTA AACCAGCATTTAAAGTGTCTGCTTTTGTGTCGCCACTCAATCAATCTACA GCATCTACAAATGTCTCGTTCAATTCGTCACTCAATGCATCCTCATTCGA TTTCTCTATGTCTCGATCACCATTTTATACTGGTGGTACAACCTTTGGTG GTGCTAATTCGTATCGTGAAACATCTGGTAAAAGGATGAAATTATCGCCA GTCTCCAATCGAGTACGAACAACAAGGACACTGATGAAAGCGAAGCCACT TCCAAATACTAAGAAAAACATTGTTACAAGTCAGACTGCTAAGCGTATTT TAAATACTCTTGGAAAGATGTCATCGCCGGTGAAAGATTCAAAGAGAATC CCACGGTCAGTTTTTACCAAACCTGCATTGAGCGAACTTGTCAAAAACCA AGCAAAAGTTGTGAGTCGGCAATCTGAATCAGTTGCTCCACCTGTAAGCT CTTTGAATAAACCTTTAAAAATTGTTAGCAAAccagaaaactttcaaaac aagatgGATTCTATTCGAAGGTTCAATCAGAAATCTGAGGTAAAAACTCA ACCAGCACAAGTACCATCGTTTTCATTCAAACAACAAACTGTTCCTCCGT TGGTTGCACCACCTAAGCAAGAGATAAAGATCCAACAACCTCCCAAGTTA CCCACGGCTGAACCTTCCAAGTCTAGCATGAAAATAAAACGAGATAAAAT GACCTCCCATTTCACCATGGCTAAAGAACCAGAAGTAGTTAACAGTATGC CAGAAATTACATCTACTGCAGCTCCATTACCCATCACTGTCATGCCCACA TTCAACTTTGCAAAAAGTgctttagaaaaacaaaaagccAGTAACATATT TTCACCGTCCTTGAACGTTACTCCCATTCTAaaaccaacacaagaaaaac aGCAAGAGATAAAAACCAAAATCGAGCCACCAATACCGTTTGAAATCCCT AAATCTGTAGAGGTGACAAAATCAACCGATGGGTTTACCTTTGCTACGCC AGAAGTTAAAGGAACCAAATCGTTTTCGACACCTCTCTTAAAAGACTTTG TGTTTAGTACACCTGTTAACCTTGCTAATAAAGCTAAGGCGACTTCTGAT ATACCAAAACCAACTGCAAAGATAGAAAAACTTGTTGTTTCGACCCAACC NACCAAATCGTTTTCGACACCTCTCTTAAAAGACTTTGTGTTTAGTACAC CTGTTAACCTTGCTAATAAAGCTAAGGCGACTTCTGATATACCAAAACCA ACTGCAAAGATAGAAAAACTTGTTGTTTCGACCCAACCACCAATAAAACC ATCTCCAGCACCTGTGATAGAACAGATCGTTAAACCGTCCACAACAATTA AACCTTTCAAAgaactaaagcaaaacaatgatAATGCAACTTGGAGTTGT CCAACTTGTATGATAGACAATGAAACAACTGATTTGAAATGTGTTGCGTG CGAGACAGCAAAACCTGGATTGGCTTCAGTAGCTTCCACTGTTAAGTCAT CGGCAAAACCAACTTTCGAAATCAAACcattaaaaaatctttcaaagccT ATAGAAGATTGGAATTGCCCAACTTGTATGATTGATAATTCAAATGACGA TTTAAAATGTGTAGCTTGTGAAACTGCAAAACCAGGTTCTAAGTCTGTGT CATCAGAAACTTCGTTTAGCGGCTTTGGGAAATTGTCAGAAACTGGAGTC AAGCTACCTACCGATACTGGCTTTAAATTTAATAGTGTTAGTACAACTGG GTTTAAATTTGGTAATGATAATTCTAGTGGTTTTAAATTCAATTCAGATA GCACCACGACAGGGTTTAAATTCCAATCAACGGAGAACACTGGGTTTAAA TTTGGTAATGATAATTCTAGTGGTTTTAAATTCAATTCAGATAGCACCAC GACAGGGTTTAAATTCCAATCAACGGAGAACACTGGGTTTAAATTTCCCA CAAAAAGCGTAGACGAACCATTCAAAGGTGATGCAAGTGCCGAGAAGAAA ACTACTGAAGTTTCCGAACCTTCAAAAACAAACAACTTATTTGGTAATAG TGCACCTTCATTTTCGTTTGGTAAACCCACTGAGACTGAAAAAGCTCCAT CATTCGCATTTGGTAAACCATCAGAGACTGAAAAAGCTCCATCGTTTTCT TTTGGGAAGCCAACAGCTACGGAAAAAGCTCCCTCGTTTTCGTTTGGTAA ATCGACTGATAATGAGAAGGCTTTATCGATTTTGAGTAGTTCGACATCCA ACGAGCCAGCAGAAGTAGAAACACCAAAACCTGCGTTCGGGTCGATTGCT GCAGCCGCTGCGGGAGGTTTTCTGAAAGTCACTGGTTCATCATCAGTACC ATTTGAGCCAACAATTACTAAAACAGACCCACCAAAATCAACAGGGTTTG CATTCGGACAAGCATCGTCCCAATCTGTTTTCGGAAGCACTTCTTCATCC CAATCAGTGCTTGGTTCAACCTCCAAAAGTGAATCCCAGCCACCTGCACC ATCTTTCAACTTTGGTCAAACCAAATCTTCAACAACAAGTTTTGGTTCAA CATCCTCAGTTTTCGGGCAAGCTTCAACCGGTTCAGTATTTGGTACTCCC GTTCAAAGCGACTCGCAATCAGCCGCTCCATCATTCAATTTCGGTCAAAG TGTTACACCTGCTTTTAACTTTGGAGCTACCCAAGAGAAGAAAGAACCTC AGAAAACATCTCTTCCCAGCTTCGGATCCAGCCAACCAACCGAATCATTG TTTGGAGCAAAGAAACCTGAAGCTTCTGCTCAACCACCATTCAACTTTGC AGCACCATCCAAACCTGAATCTGCGCCAGTATTTGGATCAGCTCCAACCC AACCGGCAGCTTCTTTCAACTTCGGTGCTTCCTCGACCGTACCATCGTTT GAGACCAAACCGTCAGGCTTCATTTTGTCAGCGAATAACAGTGCAAACCC TACTGTTAGTCAACCGCCTGCTCCATCAGGAGGATTCAATTTCTCTGCAC CAAATGCATCCTTTAGTTTCGGCGCGACGACCACGAACGGAGCAAGCGAT GCTCTAAAAACTGGTAGCGTTTTCGGACAACAGAACACTTTTGGTGCATC TAATACAGGAAATCTTTTCGCAATCGGTCAAGGTAGTAATAATAGTAACA ATACATCTAGTGGACCAATGAAAAACAGACAAATCCGTAAAGCTGTAAGA CGGAAGAAGCCGGTTTAAATATTAGTTAACtttagtttttatattttgat tttattaacaGTACGTTCTTGTTGGTATGGCTATTCATATGCTTACTCTA CACTACTGGATTTAAAAACTTCTTTAGAAATTCTGTGAATAGAATGACGA TGAATGACTTTAGGCGTA

Coding sequence (CDS) from alignment at scaffold_219:78400..83117+

>TCONS_00052730 ID=TCONS_00052730|Name=TCONS_00052730|organism=Clytia hemisphaerica|type=CDS|length=3111bp|location=Sequence derived from alignment at scaffold_219:78400..83117+ (Clytia hemisphaerica)
ATGTCTCGATCACCATTTTATACTGGTGGTACAACCTTTGGTGGTGCTAA
TTCGTATCGTGAAACATCTGGTAAAAGGATGAAATTATCGCCAGTCTCCA
ATCGAGTACGAACAACAAGGACACTGATGAAAGCGAAGCCACTTCCAAAT
ACTAAGAAAAACATTGTTACAAGTCAGACTGCTAAGCGTATTTTAAATAC
TCTTGGAAAGATGTCATCGCCGGTGAAAGATTCAAAGAGAATCCCACGGT
CAGTTTTTACCAAACCTGCATTGAGCGAACTTGTCAAAAACCAAGCAAAA
GTTGTGAGTCGGCAATCTGAATCAGTTGCTCCACCTGTAAGCTCTTTGAA
TAAACCTTTAAAAATTGTTAGCAAAccagaaaactttcaaaacaagatgG
ATTCTATTCGAAGGTTCAATCAGAAATCTGAGGTAAAAACTCAACCAGCA
CAAGTACCATCGTTTTCATTCAAACAACAAACTGTTCCTCCGTTGGTTGC
ACCACCTAAGCAAGAGATAAAGATCCAACAACCTCCCAAGTTACCCACGG
CTGAACCTTCCAAGTCTAGCATGAAAATAAAACGAGATAAAATGACCTCC
CATTTCACCATGGCTAAAGAACCAGAAGTAGTTAACAGTATGCCAGAAAT
TACATCTACTGCAGCTCCATTACCCATCACTGTCATGCCCACATTCAACT
TTGCAAAAAGTgctttagaaaaacaaaaagccAGTAACATATTTTCACCG
TCCTTGAACGTTACTCCCATTCTAaaaccaacacaagaaaaacaGCAAGA
GATAAAAACCAAAATCGAGCCACCAATACCGTTTGAAATCCCTAAATCTG
TAGAGGTGACAAAATCAACCGATGGGTTTACCTTTGCTACGCCAGAAGTT
AAAGGAACCAAATCGTTTTCGACACCTCTCTTAAAAGACTTTGTGTTTAG
TACACCTGTTAACCTTGCTAATAAAGCTAAGGCGACTTCTGATATACCAA
AACCAACTGCAAAGATAGAAAAACTTGTTGTTTCGACCCAACCNACCAAA
TCGTTTTCGACACCTCTCTTAAAAGACTTTGTGTTTAGTACACCTGTTAA
CCTTGCTAATAAAGCTAAGGCGACTTCTGATATACCAAAACCAACTGCAA
AGATAGAAAAACTTGTTGTTTCGACCCAACCACCAATAAAACCATCTCCA
GCACCTGTGATAGAACAGATCGTTAAACCGTCCACAACAATTAAACCTTT
CAAAgaactaaagcaaaacaatgatAATGCAACTTGGAGTTGTCCAACTT
GTATGATAGACAATGAAACAACTGATTTGAAATGTGTTGCGTGCGAGACA
GCAAAACCTGGATTGGCTTCAGTAGCTTCCACTGTTAAGTCATCGGCAAA
ACCAACTTTCGAAATCAAACcattaaaaaatctttcaaagccTATAGAAG
ATTGGAATTGCCCAACTTGTATGATTGATAATTCAAATGACGATTTAAAA
TGTGTAGCTTGTGAAACTGCAAAACCAGGTTCTAAGTCTGTGTCATCAGA
AACTTCGTTTAGCGGCTTTGGGAAATTGTCAGAAACTGGAGTCAAGCTAC
CTACCGATACTGGCTTTAAATTTAATAGTGTTAGTACAACTGGGTTTAAA
TTTGGTAATGATAATTCTAGTGGTTTTAAATTCAATTCAGATAGCACCAC
GACAGGGTTTAAATTCCAATCAACGGAGAACACTGGGTTTAAATTTGGTA
ATGATAATTCTAGTGGTTTTAAATTCAATTCAGATAGCACCACGACAGGG
TTTAAATTCCAATCAACGGAGAACACTGGGTTTAAATTTCCCACAAAAAG
CGTAGACGAACCATTCAAAGGTGATGCAAGTGCCGAGAAGAAAACTACTG
AAGTTTCCGAACCTTCAAAAACAAACAACTTATTTGGTAATAGTGCACCT
TCATTTTCGTTTGGTAAACCCACTGAGACTGAAAAAGCTCCATCATTCGC
ATTTGGTAAACCATCAGAGACTGAAAAAGCTCCATCGTTTTCTTTTGGGA
AGCCAACAGCTACGGAAAAAGCTCCCTCGTTTTCGTTTGGTAAATCGACT
GATAATGAGAAGGCTTTATCGATTTTGAGTAGTTCGACATCCAACGAGCC
AGCAGAAGTAGAAACACCAAAACCTGCGTTCGGGTCGATTGCTGCAGCCG
CTGCGGGAGGTTTTCTGAAAGTCACTGGTTCATCATCAGTACCATTTGAG
CCAACAATTACTAAAACAGACCCACCAAAATCAACAGGGTTTGCATTCGG
ACAAGCATCGTCCCAATCTGTTTTCGGAAGCACTTCTTCATCCCAATCAG
TGCTTGGTTCAACCTCCAAAAGTGAATCCCAGCCACCTGCACCATCTTTC
AACTTTGGTCAAACCAAATCTTCAACAACAAGTTTTGGTTCAACATCCTC
AGTTTTCGGGCAAGCTTCAACCGGTTCAGTATTTGGTACTCCCGTTCAAA
GCGACTCGCAATCAGCCGCTCCATCATTCAATTTCGGTCAAAGTGTTACA
CCTGCTTTTAACTTTGGAGCTACCCAAGAGAAGAAAGAACCTCAGAAAAC
ATCTCTTCCCAGCTTCGGATCCAGCCAACCAACCGAATCATTGTTTGGAG
CAAAGAAACCTGAAGCTTCTGCTCAACCACCATTCAACTTTGCAGCACCA
TCCAAACCTGAATCTGCGCCAGTATTTGGATCAGCTCCAACCCAACCGGC
AGCTTCTTTCAACTTCGGTGCTTCCTCGACCGTACCATCGTTTGAGACCA
AACCGTCAGGCTTCATTTTGTCAGCGAATAACAGTGCAAACCCTACTGTT
AGTCAACCGCCTGCTCCATCAGGAGGATTCAATTTCTCTGCACCAAATGC
ATCCTTTAGTTTCGGCGCGACGACCACGAACGGAGCAAGCGATGCTCTAA
AAACTGGTAGCGTTTTCGGACAACAGAACACTTTTGGTGCATCTAATACA
GGAAATCTTTTCGCAATCGGTCAAGGTAGTAATAATAGTAACAATACATC
TAGTGGACCAATGAAAAACAGACAAATCCGTAAAGCTGTAAGACGGAAGA
AGCCGGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033333XLOC_033333Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052730-proteinTCONS_00052730-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052730-exon-scaffold_219-1491911889:78400..78481TCONS_00052730-exon-scaffold_219-1491911889:78400..78481Clytia hemisphaericaexon
TCONS_00052730-exon-scaffold_219-1510915933:78400..78481TCONS_00052730-exon-scaffold_219-1510915933:78400..78481Clytia hemisphaericaexon
TCONS_00052730-exon-scaffold_219-1575043694:78400..78481TCONS_00052730-exon-scaffold_219-1575043694:78400..78481Clytia hemisphaericaexon
TCONS_00052730-exon-scaffold_219-1491911889:79380..83117TCONS_00052730-exon-scaffold_219-1491911889:79380..83117Clytia hemisphaericaexon
TCONS_00052730-exon-scaffold_219-1510915933:79380..83117TCONS_00052730-exon-scaffold_219-1510915933:79380..83117Clytia hemisphaericaexon
TCONS_00052730-exon-scaffold_219-1575043694:79380..83117TCONS_00052730-exon-scaffold_219-1575043694:79380..83117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:78400..83117 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1598 15.2718 20.8024 27.4369 85.6179 68.0961 35.9618 41.1288 19.39 30.3759 21.0227 17.1239 14.1336 15.2954 15.5094 18.0628 23.6385 19.9575 8.09417 9.07106 16.7472 16.6386 50.535 45.7593 28.2913 30.5778 10.9661 9.92053 62.7358 72.2728
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR013913Nup153_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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