TCONS_00052740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052740
Unique NameTCONS_00052740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052740 ID=TCONS_00052740|Name=TCONS_00052740|organism=Clytia hemisphaerica|type=transcript|length=1000bp
tgaacatctccgccactgcttactccacccgaatttatcacgcctctcct
aaactattcccatttttagtgatcttgtgtagaccaTAGGATCGTCTAAT
GCATAGGTTAATCTAAAGAACTTCCGTTGTAGGCCCAAAAATGTGTACAT
TAGATTAGTTTTGAGCAGACATTGAGAATCGGCGAGATTTGGAAACTTTA
TGAACTATGGGAGCTCAACTGTATTCCAAAGGAAACTTATATGAATGAAG
AGGAGTGTGtccattttattttgtattaaaTCGTaggaaaactgttaaaa
atatattttaaggaTGTAACATATGAGCTTATGCGACAGGTTTTATATAa
acgaaaaattgtaaaatataaaaaaaactagTTTTCTTTTTAGCTCAATC
CCCAAACATCATTTAACACTGTAAAAAAACTTCGAGGAAAGATTGAAAGT
TTTGTTCTTCTTTTAAGAAATCTAAATCGATTGATTGAAGCCATGGCCAA
AAACTCTAttcgagtgaaaaaaaaaagtttatcagAGATAGCTTGATTCA
TTTGGACATACTTTGCGACGATCTATACCTAACAACAGTGAGAATGAAAA
TTTACGCAAGTGATTTAAATTTCTGGTTAAACACATACAAGACTCGTCAG
AAGGTAGTGATCCATTTTCGAGCCTGAGCTTTAATACTTTAGTTCactaa
atcatcaaaatttatgaataaacatatcaaaattaaTATACAGTGCGCCC
GGAAAAAAAACAGAACATTTAGATTTATAGGAATGTAAATCCATGAAATC
ATTTATCTTGCTGAGCTTGGAATTTGAATGGGATGGAAATTTAATTATAG
GGAAGGATGGGAATCAATTCTCAAGTCGATTCAACAGTTTATGAAAAATC
AAACCAAGACATAAGGTCATAAAATCGGCATATAAATAAATTCATTAATA
GCATTTTATTCTgttattgggctcttccagaaaatgtccgtacatggggg
Run BLAST on NCBI

transcript from alignment at scaffold_219:83898..84897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052740 ID=TCONS_00052740|Name=TCONS_00052740|organism=Clytia hemisphaerica|type=transcript|length=1000bp|location=Sequence derived from alignment at scaffold_219:83898..84897 (Clytia hemisphaerica)
cccccatgtacggacattttctggaagagcccaataacAGAATAAAATGC TATTAATGAATTTATTTATATGCCGATTTTATGACCTTATGTCTTGGTTT GATTTTTCATAAACTGTTGAATCGACTTGAGAATTGATTCCCATCCTTCC CTATAATTAAATTTCCATCCCATTCAAATTCCAAGCTCAGCAAGATAAAT GATTTCATGGATTTACATTCCTATAAATCTAAATGTTCTGTTTTTTTTCC GGGCGCACTGTATAttaattttgatatgtttattcataaattttgatgat ttagtGAACTAAAGTATTAAAGCTCAGGCTCGAAAATGGATCACTACCTT CTGACGAGTCTTGTATGTGTTTAACCAGAAATTTAAATCACTTGCGTAAA TTTTCATTCTCACTGTTGTTAGGTATAGATCGTCGCAAAGTATGTCCAAA TGAATCAAGCTATCTctgataaacttttttttttcactcgaaTAGAGTTT TTGGCCATGGCTTCAATCAATCGATTTAGATTTCTTAAAAGAAGAACAAA ACTTTCAATCTTTCCTCGAAGTTTTTTTACAGTGTTAAATGATGTTTGGG GATTGAGCTAAAAAGAAAActagttttttttatattttacaatttttcgt tTATATAAAACCTGTCGCATAAGCTCATATGTTACAtccttaaaatatat ttttaacagttttcctACGAtttaatacaaaataaaatggaCACACTCCT CTTCATTCATATAAGTTTCCTTTGGAATACAGTTGAGCTCCCATAGTTCA TAAAGTTTCCAAATCTCGCCGATTCTCAATGTCTGCTCAAAACTAATCTA ATGTACACATTTTTGGGCCTACAACGGAAGTTCTTTAGATTAACCTATGC ATTAGACGATCCTAtggtctacacaagatcactaaaaatgggaatagttt aggagaggcgtgataaattcgggtggagtaagcagtggcggagatgttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033343XLOC_033343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052740-exon-scaffold_219-1491911889:83898..84897TCONS_00052740-exon-scaffold_219-1491911889:83898..84897Clytia hemisphaericaexon
TCONS_00052740-exon-scaffold_219-1510915933:83898..84897TCONS_00052740-exon-scaffold_219-1510915933:83898..84897Clytia hemisphaericaexon
TCONS_00052740-exon-scaffold_219-1575043694:83898..84897TCONS_00052740-exon-scaffold_219-1575043694:83898..84897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:83898..84897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.360005 0.313213 0.71417 1.16951 2.72569 1.44106 1.27069 1.67994 0.643571 1.07772 1.27364 0.960591 1.22009 1.47709 1.09917 1.20222 0.44215 0.602729 0.302878 0.275092 0.404771 0.450228 1.59541 1.6434 0.0482259 0.387192 0.68268 0.133909 1.98112 2.25327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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