TCONS_00052742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052742
Unique NameTCONS_00052742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052742 ID=TCONS_00052742|Name=TCONS_00052742|organism=Clytia hemisphaerica|type=transcript|length=279bp
TGTAATTAGAAAGTGCTACGTGGGATTAAAAAGAACAACCCCTTATTGAT
ATGAAGAATCATTTCGCAAAATGAATGAACAAAGGCTTCCTTGTCTAAGT
TACTGCAAAAAGTGTCttcataaaatctttaaaaaaatcctttaaaaacG
CTACATACCTAACACTTAGTTATCTAAGAATCTAAAAATGCATTACAACA
GTATTTGACATTCATGACCTCGCGAGCTTTTGCCTGTACTAAAAGTTTTA
GTAGTTACCGTGTCAAAAACGTTACAACG
Run BLAST on NCBI

transcript from alignment at scaffold_219:103861..104139

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052742 ID=TCONS_00052742|Name=TCONS_00052742|organism=Clytia hemisphaerica|type=transcript|length=279bp|location=Sequence derived from alignment at scaffold_219:103861..104139 (Clytia hemisphaerica)
CGTTGTAACGTTTTTGACACGGTAACTACTAAAACTTTTAGTACAGGCAA
AAGCTCGCGAGGTCATGAATGTCAAATACTGTTGTAATGCATTTTTAGAT
TCTTAGATAACTAAGTGTTAGGTATGTAGCgtttttaaaggattttttta
aagattttatgaaGACACTTTTTGCAGTAACTTAGACAAGGAAGCCTTTG
TTCATTCATTTTGCGAAATGATTCTTCATATCAATAAGGGGTTGTTCTTT
TTAATCCCACGTAGCACTTTCTAATTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033345XLOC_033345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052742-exon-scaffold_219-1491911889:103861..104139TCONS_00052742-exon-scaffold_219-1491911889:103861..104139Clytia hemisphaericaexon
TCONS_00052742-exon-scaffold_219-1510915933:103861..104139TCONS_00052742-exon-scaffold_219-1510915933:103861..104139Clytia hemisphaericaexon
TCONS_00052742-exon-scaffold_219-1575043694:103861..104139TCONS_00052742-exon-scaffold_219-1575043694:103861..104139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_219supercontigscaffold_219:103861..104139 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00548	2.44235	1.13432	0.554878	18.9143	11.2097	18.0321	30.7483	12.2412	19.3455	8.62738	5.33769	2.99828	2.07583	2.55992	0.915728	1.50414	3.46881	3.19489	7.80086	4.84312	6.37822	9.18941	12.0096	0	1.91993	20.6056	8.79633	20.5711	12.4619
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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