TCONS_00052756 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052756
Unique NameTCONS_00052756
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052756 ID=TCONS_00052756|Name=TCONS_00052756|organism=Clytia hemisphaerica|type=transcript|length=517bp
AAAAAGACTGTCTTTAAATCTCATGACCTATCAATTTTTCGtttagtgaa
aaatttgaaacgtTGATTAACGATGTTGACACGAAGAAATTGGACGCCCT
GAAGAGATCTCTAGcaCCATTCGTGTCAACGGAAATCGCACATCGAGTCG
ATCGTTCAAAACTATAGCGAGAAAATGGACGAAATTGCTTTAAAAGGGGT
GTGTGAGTTGGACTGCACGCATCCcatgatatttttgttttgttttaagg
gaTGTGAATCAGACTCAAAGCAAGCTTTTGgtatacagtggagtcttcat
aactcgaacacgcaaggGAAACCCAAGgttattcgagttaaggaaatttc
gcgttatggagtaaggtttatatataagacattgttaactgaagggacca
taaagctggttcgagttaaagaaccTTTCaagtaatagaggttcgagtta
aagagactccactgtaacttttttcaacgaaattgaataaaaatggcATA
TTCATGATCTTTGTACC
Run BLAST on NCBI

transcript from alignment at scaffold_22:161450..162061+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052756 ID=TCONS_00052756|Name=TCONS_00052756|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at scaffold_22:161450..162061+ (Clytia hemisphaerica)
AAAAAGACTGTCTTTAAATCTCATGACCTATCAATTTTTCGtttagtgaa
aaatttgaaacgtTGATTAACGATGTTGACACGAAGAAATTGGACGCCCT
GAAGAGATCTCTAGGTAATTCAAATTCTAAACACCCTCGTTCTTAATAAC
CTCTCAGGTCATGTATGTGTGCGAATACCTTAACTCACCgatctatttat
ttttcttagcaCCATTCGTGTCAACGGAAATCGCACATCGAGTCGATCGT
TCAAAACTATAGCGAGAAAATGGACGAAATTGCTTTAAAAGGGGTGTGTG
AGTTGGACTGCACGCATCCcatgatatttttgttttgttttaagggaTGT
GAATCAGACTCAAAGCAAGCTTTTGgtatacagtggagtcttcataactc
gaacacgcaaggGAAACCCAAGgttattcgagttaaggaaatttcgcgtt
atggagtaaggtttatatataagacattgttaactgaagggaccataaag
ctggttcgagttaaagaaccTTTCaagtaatagaggttcgagttaaagag
actccactgtaacttttttcaacgaaattgaataaaaatggcATATTCAT
GATCTTTGTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033356XLOC_033356Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052756-exon-scaffold_22-1491911889:161450..161563TCONS_00052756-exon-scaffold_22-1491911889:161450..161563Clytia hemisphaericaexon
TCONS_00052756-exon-scaffold_22-1510915933:161450..161563TCONS_00052756-exon-scaffold_22-1510915933:161450..161563Clytia hemisphaericaexon
TCONS_00052756-exon-scaffold_22-1575043694:161450..161563TCONS_00052756-exon-scaffold_22-1575043694:161450..161563Clytia hemisphaericaexon
TCONS_00052756-exon-scaffold_22-1491911889:161659..162061TCONS_00052756-exon-scaffold_22-1491911889:161659..162061Clytia hemisphaericaexon
TCONS_00052756-exon-scaffold_22-1510915933:161659..162061TCONS_00052756-exon-scaffold_22-1510915933:161659..162061Clytia hemisphaericaexon
TCONS_00052756-exon-scaffold_22-1575043694:161659..162061TCONS_00052756-exon-scaffold_22-1575043694:161659..162061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_22supercontigscaffold_22:161450..162061 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26706	1.68489	1.17379	0.396593	2.17471	0.981993	1.48092	1.24777	2.62079	1.44279	1.86721	0.843856	2.68127	3.10275	2.7471	3.57979	3.71824	3.98834	1.34692	2.94703	2.00466	1.30373	2.77351	3.00181	2.22609	2.20748	3.00095	2.69701	6.5203	7.29445
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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