TCONS_00052793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052793
Unique NameTCONS_00052793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052793 ID=TCONS_00052793|Name=TCONS_00052793|organism=Clytia hemisphaerica|type=transcript|length=1493bp
CCTTTAAGCATTGAGGATTACAGgcgtcaaaataatttttttttaacagt
aAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgattttttaagccta
aaaaagccttTCCTTTGAACTACAGTAAAAGGCAACATTGTAAGTTTAGA
AGtatttttcgtgacttttttaagAGATAACATGtagaaaaatgtaaata
taaaGGGAAGAGAAAATacgtaaaaaatattttggttgctATGTAAAAAC
TTTCTTACTTGCTTCAAGATAAacatcaaaaaaacttttgggACTACACT
TTTACACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAAT
GGTGCATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATT
TATTTCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaa
aatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTT
GTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaactt
caaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaa
aaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGA
AACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAAC
GATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGAT
ATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATG
AGAAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAAC
CAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACAT
AGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGAT
ATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGA
GCGAATGGAAGCGAGGTCCAACATGTAACACCATTACACTATGCTATGCA
ACAAAACCACAAAGAGtgcatcaaaattttgaaaggatcGTCATCCATGG
TACAGAATAATGATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAAT
GTTTCAATGATCTCACTAGCTGCTCAAGAAGCTCTCATCAACAAGAGTAT
ATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTAG
ACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACTC
AATACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGAA
ACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACA
CACCGCTACATTTCGCTTCAAGATACGGACACGAAGACACAATAAAGCTT
CTCGTTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGANN
Run BLAST on NCBI

transcript from alignment at scaffold_220:63455..68324+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052793 ID=TCONS_00052793|Name=TCONS_00052793|organism=Clytia hemisphaerica|type=transcript|length=4870bp|location=Sequence derived from alignment at scaffold_220:63455..68324+ (Clytia hemisphaerica)
CCTTTAAGCATTGAGGATTACAGgcgtcaaaataatttttttttaacagt
aAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgattttttaagccta
aaaaagccttTCCTTTGAACTACAGTAAAAGGCAACATTGTAAGTTTAGA
AGtatttttcgtgacttttttaagAGATAACATGtagaaaaatgtaaata
taaaGGGAAGAGAAAATacgtaaaaaatattttggttgctATGTAAAAAC
TTTCTTACTTGCTTCAAGATAAacatcaaaaaaacttttgggACTACACT
TTTACACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAAT
GGTGCATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATT
TATTTCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaa
aatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTT
GTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaactt
caaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaa
aaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGA
AACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAAC
GATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGAT
ATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATG
AGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataagaacaagaa
aatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCT
CAAATTgctcttatcctgttcttattctTTTGACAATATTAATGAACTAA
AGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATTCATTGC
AGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTT
GGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTG
GATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTG
AAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGA
GGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTAC
GTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATA
AAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGATTTTTCG
ATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCC
GCACCGCTAAGTACTGACAGGCGTataccacagatatcttatataaaaca
ctagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTT
TAAtaagtagaccatagttcggtGTTGGCaattttatcgatctttcgcct
CACCGTTTCGTGCCATTTAGgttttttgattggttgaacaaATTTTGGTA
CCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcagcgca
ttattttgcttcacctgccgttgcttgggaaatacagagtagctctattt
AGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACATGCAATCC
TCAAGTAAATTAAATGAcgacaaaaacaattttttcactaaCACTACTGT
cttgttttttacattttaaacttatatttgcaatattcatgacgtaatgt
tttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGTATGAA
ACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACATGTAACA
CCATTACACTATGCTATGCAACAAAACCACAAAGAGtgcatcaaaatttt
gaaaggatcGTCATCCATGGTACAGAATAATGATGAGATGGCTTGGGATA
TGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGCTCAAGAA
GGTTGGTAACAAAATAACTAGAACACCCTTTACAGGGATGAGGTTTCCGC
ATCTCGTCTGGGAAGGATATAGTTTAAATGTCAGACTTTCTGCTTTGTCT
TCGTTTGATGTAACGGAAGTAACAGAAAAAAGTCGACgggaaaaatcttg
aaaaaggcTAAGTAGTAAAGTCATTGTATTAACGTTAAACTAAAGAAACC
CTCGCATCCATTCGCTTTAGACAGGATCAATCTTCGTCAAAAATAAGGAA
GGCAAggcaaaaaaccttttaaatcAGACCTTAGTCCTAGAATTACAAAA
CAATGTccatgatgataaaacaattaCATGTGAGATCGCTGGATATAAAA
CTTTCTTGTTTGCGCACCCAGTAATTTCTCAATCCAAGTTTGCTTTGGCT
ATTATTGAGTTTGGGCCCCCAAGTGGTTTTCAtgatgacgtgatagggac
ttttttgcagcgcggttacgtgatttggaaatttgttcCTCGTGATTGCG
TGACGAGGTTAAAACGATCGTGATTTAAAAGATAtttgagccgtgatacg
tgatttagattttttcaaagggatgctgattttttgctgatttgcgtgat
cgtgattgaagacaaaaaattgcgcgatatcgtgatcagagttaccgctg
ggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNccagcctgccccaaagttttagcctcgt
tttggcaaaaactcgtgaccacgtccttaaaaatgaaaattttcaaaaat
gagaaaaaacacctccagatattcacccaaggaacaagtgtgccaaattt
caaccaaacccgatcatttttgaagtcttcagcctgccccaaagttttag
cctcgttttggcgaaaactcgtgaccgcgcccttgaaaatggaaattttg
aaaaaatgagaaaaaacacccccagatattcacccaaaaAACAAGTATGC
CAGATTTCAACTAAacccgatcatttttgaagtctccagcctgccccaaa
gttttagcctcgttttggcgaaaactcgtgaccacgcccttaaaaatgaa
aatttttaaaaaatgaaaaaaacacccccagatattcatccaaggaacaa
gtgtaccaaatttcaaccaaatccgatcatttttgaagtctccagcctgc
cccaaagttttagcctcgttttggcgaaaactcgtgaccacgcccttaaa
aatggaAATTNNNNNNNNNNNNGAAAAAAcatccccagatattcacccaa
ggaacaagtgtgccaaatttcagccaaacctgatcatttttgaagtctcc
agcctgccccaaagttttcggacagacatacatacacacacacacacaca
cacacacacacatacattgtcagattctagctcaactgaagttgagaata
aaaaaCGATTCGTTTTCCTTTCCTTTTTCTAGCTCTCATCAACAAGAGTA
TATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTA
GACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACT
CAATACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGA
AACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAAC
ACACCGCTGCATTTCGCTTCAAGGTAAGATTCATGANCGATTATATACGG
AAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAA
CACACCGCTACATTTCGCTTCAAGGTAAGATTCATTCATAtctattcatg
acgtaatgtttctgaattttgaatttcttttctccAGTCTAAATTTGTCA
CTACTGGCAAAAGCCGGAgtgtttccgtagaaaacattacataACGAATT
CAAAGAAGTCACAGTTTAGCACACGTTGTTatttcaacattcatctaacg
tgCACAGGACGTCATGGCGTTTTTTACTTATTTAAAATCTGGACTAGTGT
TTAAAGACACTCTACAACTCGAATCCTTCCATAAATTGTGTACTTCCTGC
TCAAAACGCCAACTTGGTAACTATTACTCGAAGTCAACGCTCGAAAAAGC
GTCCCCTGTTTTGTCCCCACTCTAGCTTTAAAGAGGGGGGATCGTGTCAA
ATTAGATCTGATCTGACTTGAAATTATATTCTGCTTTTCACCTTTTCAGA
TACGGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAGCTGACTT
GGACAAATTGAATCAAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033370XLOC_033370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052793-exon-scaffold_220-1491911889:63455..64270TCONS_00052793-exon-scaffold_220-1491911889:63455..64270Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:63455..64270TCONS_00052793-exon-scaffold_220-1510915933:63455..64270Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:63455..64270TCONS_00052793-exon-scaffold_220-1575043694:63455..64270Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1491911889:64457..64655TCONS_00052793-exon-scaffold_220-1491911889:64457..64655Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:64457..64655TCONS_00052793-exon-scaffold_220-1510915933:64457..64655Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:64457..64655TCONS_00052793-exon-scaffold_220-1575043694:64457..64655Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1491911889:65390..65555TCONS_00052793-exon-scaffold_220-1491911889:65390..65555Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:65390..65555TCONS_00052793-exon-scaffold_220-1510915933:65390..65555Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:65390..65555TCONS_00052793-exon-scaffold_220-1575043694:65390..65555Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1491911889:67487..67669TCONS_00052793-exon-scaffold_220-1491911889:67487..67669Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:67487..67669TCONS_00052793-exon-scaffold_220-1510915933:67487..67669Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:67487..67669TCONS_00052793-exon-scaffold_220-1575043694:67487..67669Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1491911889:67771..67828TCONS_00052793-exon-scaffold_220-1491911889:67771..67828Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:67771..67828TCONS_00052793-exon-scaffold_220-1510915933:67771..67828Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:67771..67828TCONS_00052793-exon-scaffold_220-1575043694:67771..67828Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1491911889:68254..68324TCONS_00052793-exon-scaffold_220-1491911889:68254..68324Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1510915933:68254..68324TCONS_00052793-exon-scaffold_220-1510915933:68254..68324Clytia hemisphaericaexon
TCONS_00052793-exon-scaffold_220-1575043694:68254..68324TCONS_00052793-exon-scaffold_220-1575043694:68254..68324Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:63455..68324 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0967072	0.0175795	0.0237972	0.043715	0.0558922	0.0147223	0.786419	0.920413	0.648476	0.288343	0.22976	0.21026	2.82144	1.90738	0	0.0168373	0.806596	0.941309	4.71539	5.42873	1.32594	1.14282	0.180993	0.595564	55.379	32.7745	0	0.0404341	0.110752	0.0713024
Blast
[Close]
BLAST of TCONS_00052793 vs. Swiss-Prot (Human)
Match: ANK2 (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 6.571e-20
Identity = 71/279 (25.45%), Postives = 138/279 (49.46%), Query Frame = 2 
Query:  698 NDLYEACRTGKTEWLNVILGQPEDMFDLNEITEDEKGQQGLSASHLAARHNQAECLEILLEHGAYVDIEDRFGFRPIHDTALYGYDDCLKLLLSHGA--STGGANGSEVQHVTPLHYAMQQNHKECIKIL-----KGSSSMVQNNDEMAWDMASKRGNVSMISLAAQ---------EALINKSISNWLKNSALTGHTNYLDKIKTAINR----KFGSREALNTIITASQHGQTDYIRKLIEQGVDVNSTNKEGNTPLHFASRYGHEDTIKLLVDSGADL 1474
            N L+ A + G    +  +LG+   +        D   ++G +A H+A+   QAE +++L++ GA ++ + + GF P++  A   + D +K LL +GA  ST   +G      TPL  A+QQ H + + IL     KG   +       A  +A+++ +    +L  Q         + ++N++  +      +  H   ++     +NR     F +R  +  +  AS+ G T+ ++ L+++G  +++  ++G TPLH A+R GH+  ++LL++ GA L
Sbjct:   66 NALHLAAKEGHVGLVQELLGRGSSV--------DSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDG-----FTPLAVALQQGHNQAVAILLENDTKGKVRLP------ALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPL 325

HSP 2 Score: 88.1965 bits (217), Expect = 4.533e-18
Identity = 83/296 (28.04%), Postives = 126/296 (42.57%), Query Frame = 2 
Query:  704 LYEACRTGKTEWLNVILGQPEDMFDLNEITEDEKGQQGLSASHLAARHNQAECLEILLEHGAYVDIEDRFGFRPIHDTALYGYDDCLKLLLSH--GASTGGANGSEVQHV----------------------------TPLHYAMQQNHKECIKIL---KGSSSMVQNNDEMAWDMASKRGNVSMISLAAQE-ALINKSISNWLKNSALTGHTNYLDKIKTA-INRKFGSREALNT------IITASQHGQTDYIRKLIEQGVDVNSTNKEGNTPLHFASRYGHEDTIKLLVDSGA 1468
            L+ A R GKTE + ++L              D     G +  H++AR  Q +   +LLE GA   +  + GF P+H  A YG  D  KLLL     A + G NG    HV                            TPLH A ++N  +    L      +++V         +AS+ G+  M++L   + A I+ S  + L +  L       DK+  A I  K G+ +  +T      +I A  +G    +  L++QG +VN+  K G TPLH A++ GH   I +L+  GA
Sbjct:  501 LHIASRLGKTEIVQLLLQHMAH--------PDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTKSGLTSLHLAAQE---DKVNVADILTKHGADQDAHTKLGYTPLIVACHYGNVKMVNFLLKQGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGA 785
The following BLAST results are available for this feature:
BLAST of TCONS_00052793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK26.571e-2025.45Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4[more]
back to top