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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052795 ID=TCONS_00052795|Name=TCONS_00052795|organism=Clytia hemisphaerica|type=transcript|length=649bp
CACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAATGGTG
CATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATTTATT
TCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaaaata
gaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTTGTTA
TAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaacttcaaa
atggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaaaaac
ttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGAAACC
AAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAACGATT
TATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATATTA
GGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAGAA
AGGCCAACAAGGTTTGTCTGCGTTACATTTGGCTGCGCGTCACAACCAAG
CGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAA
GATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATG Run BLAST on NCBI transcript from alignment at scaffold_220:63759..70867+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052795 ID=TCONS_00052795|Name=TCONS_00052795|organism=Clytia hemisphaerica|type=transcript|length=7109bp|location=Sequence derived from alignment at scaffold_220:63759..70867+ (Clytia hemisphaerica)
CACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAATGGTG
CATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATTTATT
TCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaaaata
gaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTTGTTA
TAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaacttcaaa
atggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaaaaac
ttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGAAACC
AAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAACGATT
TATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATATTA
GGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAGAA
AGGCCAACAAGGGTAAGAAGATTctatctttttataagaacaagaaaatt
tttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCTCAAA
TTgctcttatcctgttcttattctTTTGACAATATTAATGAACTAAAGGC
TTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATTCATTGCAGTT
TGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAG
ATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATT
TCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTGAAAT
TGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTA
AACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTACGTCA
CTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATAAAAG
ACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGATTTTTCGATGC
CGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCCGCAC
CGCTAAGTACTGACAGGCGTataccacagatatcttatataaaacactag
acaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTTTAAt
aagtagaccatagttcggtGTTGGCaattttatcgatctttcgcctCACC
GTTTCGTGCCATTTAGgttttttgattggttgaacaaATTTTGGTACCAA
ACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcagcgcattat
tttgcttcacctgccgttgcttgggaaatacagagtagctctatttAGTG
TTTTATGTAAGATATCTATGGTGTATAAAATAACAACATGCAATCCTCAA
GTAAATTAAATGAcgacaaaaacaattttttcactaaCACTACTGTcttg
ttttttacattttaaacttatatttgcaatattcatgacgtaatgtttta
tactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGTATGAAACAT
TACATCATGTATTTTATGAATTTACCTATAGGTCCAACATGTAACACCAT
TACACTATGCTATGCAACAAAACCACAAAGAGtgcatcaaaattttgaaa
ggatcGTCATCCATGGTACAGAATAATGATGAGATGGCTTGGGATATGGC
TTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGCTCAAGAAGGTT
GGTAACAAAATAACTAGAACACCCTTTACAGGGATGAGGTTTCCGCATCT
CGTCTGGGAAGGATATAGTTTAAATGTCAGACTTTCTGCTTTGTCTTCGT
TTGATGTAACGGAAGTAACAGAAAAAAGTCGACgggaaaaatcttgaaaa
aggcTAAGTAGTAAAGTCATTGTATTAACGTTAAACTAAAGAAACCCTCG
CATCCATTCGCTTTAGACAGGATCAATCTTCGTCAAAAATAAGGAAGGCA
AggcaaaaaaccttttaaatcAGACCTTAGTCCTAGAATTACAAAACAAT
GTccatgatgataaaacaattaCATGTGAGATCGCTGGATATAAAACTTT
CTTGTTTGCGCACCCAGTAATTTCTCAATCCAAGTTTGCTTTGGCTATTA
TTGAGTTTGGGCCCCCAAGTGGTTTTCAtgatgacgtgatagggactttt
ttgcagcgcggttacgtgatttggaaatttgttcCTCGTGATTGCGTGAC
GAGGTTAAAACGATCGTGATTTAAAAGATAtttgagccgtgatacgtgat
ttagattttttcaaagggatgctgattttttgctgatttgcgtgatcgtg
attgaagacaaaaaattgcgcgatatcgtgatcagagttaccgctggggg
ggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNccagcctgccccaaagttttagcctcgttttg
gcaaaaactcgtgaccacgtccttaaaaatgaaaattttcaaaaatgaga
aaaaacacctccagatattcacccaaggaacaagtgtgccaaatttcaac
caaacccgatcatttttgaagtcttcagcctgccccaaagttttagcctc
gttttggcgaaaactcgtgaccgcgcccttgaaaatggaaattttgaaaa
aatgagaaaaaacacccccagatattcacccaaaaAACAAGTATGCCAGA
TTTCAACTAAacccgatcatttttgaagtctccagcctgccccaaagttt
tagcctcgttttggcgaaaactcgtgaccacgcccttaaaaatgaaaatt
tttaaaaaatgaaaaaaacacccccagatattcatccaaggaacaagtgt
accaaatttcaaccaaatccgatcatttttgaagtctccagcctgcccca
aagttttagcctcgttttggcgaaaactcgtgaccacgcccttaaaaatg
gaAATTNNNNNNNNNNNNGAAAAAAcatccccagatattcacccaaggaa
caagtgtgccaaatttcagccaaacctgatcatttttgaagtctccagcc
tgccccaaagttttcggacagacatacatacacacacacacacacacaca
cacacacatacattgtcagattctagctcaactgaagttgagaataaaaa
aCGATTCGTTTTCCTTTCCTTTTTCTAGCTCTCATCAACAAGAGTATATC
GAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTAGACA
AAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACTCAAT
ACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGAAACT
TATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACACAC
CGCTGCATTTCGCTTCAAGGTAAGATTCATGANCGATTATATACGGAAAC
TTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACACA
CCGCTACATTTCGCTTCAAGGTAAGATTCATTCATAtctattcatgacgt
aatgtttctgaattttgaatttcttttctccAGTCTAAATTTGTCACTAC
TGGCAAAAGCCGGAgtgtttccgtagaaaacattacataACGAATTCAAA
GAAGTCACAGTTTAGCACACGTTGTTatttcaacattcatctaacgtgCA
CAGGACGTCATGGCGTTTTTTACTTATTTAAAATCTGGACTAGTGTTTAA
AGACACTCTACAACTCGAATCCTTCCATAAATTGTGTACTTCCTGCTCAA
AACGCCAACTTGGTAACTATTACTCGAAGTCAACGCTCGAAAAAGCGTCC
CCTGTTTTGTCCCCACTCTAGCTTTAAAGAGGGGGGATCGTGTCAAATTA
GATCTGATCTGACTTGAAATTATATTCTGCTTTTCACCTTTTCAGATACG
GACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAGCTGACTTGGAC
AAATTGAATCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAATGGAGCTGCAAAATCGCATCTCGCTAGaagaat
ttcccttttttggcTTAAGTTTGAAGTGATATTGGGATATTTCTCTTCAA
ATTCCCCTCAGCGAAAATTATCCTGTAATTAATCAGGAACAACGACTCCC
CAAATAGGGCGTGACTGCGCTTAAGGGATACATGGGTTTTATTTCACATT
ATCCTTTAAGCATTGAGGATTACAGgcgtcaaaattatttttttaaacag
taAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgattttttaagcct
aaaaaagccttTCCTTTGAACTACAGTAAAAGGCAACATTGTAAGTTTAG
AAgtatttttgtgacttttttaaGAGATAACATGTAGGAAAATGTAAATA
TAAAGGGAAGAGAAAATacgtaaaaaatattttggttgctATGTAAAAAC
TTTCTTACTTGCTTCAAGATAAACATCAAAAAACCTTTTGGGACTACACT
TTTACACTTTATAAGGTTCAAAAAAGGTTCTAAAATGCCCTCTTTGGTAT
GGTGTATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATTTA
TTTCAAGCTGTTTTtgtgttgtatttttttttgttctcgttttagcaaaa
atagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTTG
TTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaagaaaggaaaactt
caaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGATTTGGagagaa
aaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGA
AACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACCTGATACGGAAC
GATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGAT
ATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATG
AGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataagaacaagaa
aatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCT
CAAATTgctcttatcctgttcttattctTTTGACAATATTAAGGAACTAA
AGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATTCATTGC
AGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTT
GGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTG
GATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTG
AAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGA
GGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTAC
GTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATA
AAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGATTTTTCG
ATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCC
GCACCGCTAAGTACTGACAGGCGTataccacagatatcttatataaaaca
ctagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTT
TAAtaagtagaccatagttcggtGTTGGCaattttatcgatctttcgcct
CACCGTTTCGTGCCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAAC
AAAGAcggcgcattattttgcttcacctgccgtTGCTTGCGAAATACAGA
GTAGCTATATTTAGTGTTTTATGTAAGATATCTATGGTGTATAAAATAAC
AACATGCAATCCTCAAGTAAATTGAATGAcgacaaaaacaattttttcac
taaCACTACTGTCTTNAAGAAACCAAGAAAATATTCTATAGAAGGAAAAG
ATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAA
ACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCT
CAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTcta
tctttttataagaacaagaaaatttttcttgagGATCGGCTCTTCTACTT
TTTTTTTGCGCTATAACCCTCAAATTGCTCTTATCCTGTCCTTATTCTTT
TGACAATATTAAGGAACTAAAGGCTTTTAACCAATTTCTACTACTTTGAC
cctcaattttcattcattgcaGTTTGTCTGCGTTACATTTGGCTGCGCGT
CACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGT
AGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGT
ATGGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052795-exon-scaffold_220-1491911889:63759..64209 | TCONS_00052795-exon-scaffold_220-1491911889:63759..64209 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1510915933:63759..64209 | TCONS_00052795-exon-scaffold_220-1510915933:63759..64209 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1575043694:63759..64209 | TCONS_00052795-exon-scaffold_220-1575043694:63759..64209 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1491911889:69364..69424 | TCONS_00052795-exon-scaffold_220-1491911889:69364..69424 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1510915933:69364..69424 | TCONS_00052795-exon-scaffold_220-1510915933:69364..69424 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1575043694:69364..69424 | TCONS_00052795-exon-scaffold_220-1575043694:69364..69424 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1491911889:70731..70867 | TCONS_00052795-exon-scaffold_220-1491911889:70731..70867 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1510915933:70731..70867 | TCONS_00052795-exon-scaffold_220-1510915933:70731..70867 | Clytia hemisphaerica | exon |
| TCONS_00052795-exon-scaffold_220-1575043694:70731..70867 | TCONS_00052795-exon-scaffold_220-1575043694:70731..70867 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:63759..70867 + |
Blast
The following BLAST results are available for this feature:
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