TCONS_00052876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052876
Unique NameTCONS_00052876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052876 ID=TCONS_00052876|Name=TCONS_00052876|organism=Clytia hemisphaerica|type=transcript|length=821bp
TTGCTTAGACTCCGATAAAGGGATGTATTAGATATTGTGGGTGCGAGAAG
TGCGTAGGACATTTAAATAATCGAAATTCATTTCAGATCACAACTTGGTC
AGTATCGAACTTACCACCTCTATCAGCTAACCAAGAAGAAATTGCTGAAA
TATGTTATGTCTGTAAGAACTGTAAGAAACCGTTGTCTAAACATAAAAGC
ACGTGGCGAAGACACTACTCGTCATGCGCACAACAATTCCCTTACAATTG
TCATGTTTGTGGTAAAGGGTTTACTATGAAATTTCGTATGGAAGGTCACG
TTGCTAAAGTACACGGTGAAGAACCTTTAATTAAAAAAGAGGTTATGAAA
AAGTCGAGAGTGAAACCAGAACCTGGTACCACTATCAAGAGCGAGCCAAT
CGATTATCATTATGGGGATCAAAGGTTGGATTTAGAAGTGGATAATCAGT
TGAGGCTACCTTCGTTGCCCGACAACGTCACAACGGATAACAATAAGAAA
ACATCGGAGCGCCATCATCCGAACAGTGACATCAAAATGGAAAGTTTTGA
AATGGTGTTCGGATTTCGTTAAGAGGATATGATATAGAACAAGATTTTTT
TAtactttcacttttttcctTTCTGGAGTCATTACACACGTTTGACCTcg
caatttttgttttgttgcttACTCTTTGGTGCCTAAAAAACGCCCCAACC
CGCTTGTTAAtttctggatttttttccaaccccggaaccttattaggacc
ccccccttgtttattaatttttgaaattattttcaactaTCAAAAGAAAA
GTCCCTTAAATTGCTCTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_220:141829..142649

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052876 ID=TCONS_00052876|Name=TCONS_00052876|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at scaffold_220:141829..142649 (Clytia hemisphaerica)
ATTTAGAGCAATTTAAGGGACTTTTCTTTTGAtagttgaaaataatttca
aaaattaataaacaaggggggggtcctaataaggttccggggttggaaaa
aaatccagaaaTTAACAAGCGGGTTGGGGCGTTTTTTAGGCACCAAAGAG
TaagcaacaaaacaaaaattgcgAGGTCAAACGTGTGTAATGACTCCAGA
AaggaaaaaagtgaaagtaTAAAAAAATCTTGTTCTATATCATATCCTCT
TAACGAAATCCGAACACCATTTCAAAACTTTCCATTTTGATGTCACTGTT
CGGATGATGGCGCTCCGATGTTTTCTTATTGTTATCCGTTGTGACGTTGT
CGGGCAACGAAGGTAGCCTCAACTGATTATCCACTTCTAAATCCAACCTT
TGATCCCCATAATGATAATCGATTGGCTCGCTCTTGATAGTGGTACCAGG
TTCTGGTTTCACTCTCGACTTTTTCATAACCTCTTTTTTAATTAAAGGTT
CTTCACCGTGTACTTTAGCAACGTGACCTTCCATACGAAATTTCATAGTA
AACCCTTTACCACAAACATGACAATTGTAAGGGAATTGTTGTGCGCATGA
CGAGTAGTGTCTTCGCCACGTGCTTTTATGTTTAGACAACGGTTTCTTAC
AGTTCTTACAGACATAACATATTTCAGCAATTTCTTCTTGGTTAGCTGAT
AGAGGTGGTAAGTTCGATACTGACCAAGTTGTGATCTGAAATGAATTTCG
ATTATTTAAATGTCCTACGCACTTCTCGCACCCACAATATCTAATACATC
CCTTTATCGGAGTCTAAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033404XLOC_033404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052876-exon-scaffold_220-1491911889:141829..142649TCONS_00052876-exon-scaffold_220-1491911889:141829..142649Clytia hemisphaericaexon
TCONS_00052876-exon-scaffold_220-1510915933:141829..142649TCONS_00052876-exon-scaffold_220-1510915933:141829..142649Clytia hemisphaericaexon
TCONS_00052876-exon-scaffold_220-1575043694:141829..142649TCONS_00052876-exon-scaffold_220-1575043694:141829..142649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:141829..142649 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1594	2.09161	1.2471	1.28431	5.5505	5.80692	4.76991	3.69802	2.34482	2.84392	3.87628	4.59433	4.7036	4.28416	4.44385	6.07597	3.69903	4.81729	1.10922	2.57939	2.5222	2.0504	4.85212	3.32357	4.668	4.99929	2.70261	2.6298	3.21712	2.55663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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