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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052878 ID=TCONS_00052878|Name=TCONS_00052878|organism=Clytia hemisphaerica|type=transcript|length=1126bp
TtaagaattttattattttgtgagaaataaaaaaagcaacATTTTATTTA
GAGAAGATTAATAAAATAATGGTTATTGCAACTGTGACTGTTGCAGCCAC
GGCTGGTGTTGCCGGTGCCATAGTCATCGGGTCAGGAACTGCAACTGTAT
CTGTAGGAGCTGGTGGGGCTGCTGCCACAACTACAGTAGCATCAGGAGTA
GGAGGAGCCGGGGCTATTGGAGCAGGATCTACTACAGCTGCGGTTGTTAG
AGGGCTCGGATATAATACCTTAATGGGCTTAGCAGGAACGGTTGGGAACA
TGGGACCATCTGGTTTGATAGCCATGGGGCCATCTGGTTGGATAACCATT
GGAGCAAATTGTGAACCAAAGTCAAACATCAATTGGGATTGTTGGAAACC
CATCCTTCATGAGGAAGATAATTCAAAATCCACTGGAATCCTTTTGAAAG
AGCTTGCTGCTGATGAGAGGGTCAAGACAATCAGTTTTGAGAACGATAAC
ATTCACCTCACTGTAGAAAACATCTGGAATGAGAAATTTCAACTGTCTCT
TGTCCAGTTACCTGAGCCTGTTGGTGGAGGGATCGCCTTTCATGCTGAGA
GAATCTAGATATGTTTCTGGCACAggattggcaaaataagaaGTGATGAC
TGTTTACGAATAATAAAAGTTATGATTATATGTTGTCCATAAAAGTATGA
CATGTTTAAATGAATTTATCCCCTTGAAAATTTTCTCTCCTTGAAAACTA
TGATTATTATTAAGCCAGAAAAatatccccttctcacagagcATTTGGGA
CCACTTCCAActtgaaaaattgtccaaagttatactccaatttttgtccc
gctaaaaataatcaaataaacaaatccccactgaaaaacattgtattatt
tttttattcatccACGTTGGATTTTTCTGacaataaaattcaaatccCAA
GCCATAAAAAAACACCCTACCGAGTGGTCTGTGAGAGGGGGTGtgtagaa
aaacataattttgatattttgattgaatttcttTACCTTTTAGCACATTT
CATTTGTGAATAACAAATAAAGAATGCTTCAATTTTACGCGTTTTAGTCA
TTTATTATTTTTGGATTGATCGTGAt Run BLAST on NCBI protein sequence of TCONS_00052878-protein >TCONS_00052878-protein ID=TCONS_00052878-protein|Name=TCONS_00052878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
MVIATVTVAATAGVAGAIVIGSGTATVSVGAGGAAATTTVASGVGGAGAI
GAGSTTAAVVRGLGYNTLMGLAGTVGNMGPSGLIAMGPSGWITIGANCEP
KSNINWDCWKPILHEEDNSKSTGILLKELAADERVKTISFENDNIHLTVE
NIWNEKFQLSLVQLPEPVGGGIAFHAERI Run BLAST on NCBI transcript from alignment at scaffold_220:192856..193981 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052878 ID=TCONS_00052878|Name=TCONS_00052878|organism=Clytia hemisphaerica|type=transcript|length=1126bp|location=Sequence derived from alignment at scaffold_220:192856..193981 (Clytia hemisphaerica)
aTCACGATCAATCCAAAAATAATAAATGACTAAAACGCGTAAAATTGAAG
CATTCTTTATTTGTTATTCACAAATGAAATGTGCTAAAAGGTAaagaaat
tcaatcaaaatatcaaaattatgtttttctacaCACCCCCTCTCACAGAC
CACTCGGTAGGGTGTTTTTTTATGGCTTGggatttgaattttattgtCAG
AAAAATCCAACGTggatgaataaaaaaataatacaatgtttttcagtggg
gatttgtttatttgattatttttagcgggacaaaaattggagtataactt
tggacaatttttcaagTTGGAAGTGGTCCCAAATgctctgtgagaagggg
atatTTTTCTGGCTTAATAATAATCATAGTTTTCAAGGAGAGAAAATTTT
CAAGGGGATAAATTCATTTAAACATGTCATACTTTTATGGACAACATATA
ATCATAACTTTTATTATTCGTAAACAGTCATCACttcttattttgccaat
ccTGTGCCAGAAACATATCTAGATTCTCTCAGCATGAAAGGCGATCCCTC
CACCAACAGGCTCAGGTAACTGGACAAGAGACAGTTGAAATTTCTCATTC
CAGATGTTTTCTACAGTGAGGTGAATGTTATCGTTCTCAAAACTGATTGT
CTTGACCCTCTCATCAGCAGCAAGCTCTTTCAAAAGGATTCCAGTGGATT
TTGAATTATCTTCCTCATGAAGGATGGGTTTCCAACAATCCCAATTGATG
TTTGACTTTGGTTCACAATTTGCTCCAATGGTTATCCAACCAGATGGCCC
CATGGCTATCAAACCAGATGGTCCCATGTTCCCAACCGTTCCTGCTAAGC
CCATTAAGGTATTATATCCGAGCCCTCTAACAACCGCAGCTGTAGTAGAT
CCTGCTCCAATAGCCCCGGCTCCTCCTACTCCTGATGCTACTGTAGTTGT
GGCAGCAGCCCCACCAGCTCCTACAGATACAGTTGCAGTTCCTGACCCGA
TGACTATGGCACCGGCAACACCAGCCGTGGCTGCAACAGTCACAGTTGCA
ATAACCATTATTTTATTAATCTTCTCTAAATAAAATgttgctttttttat
ttctcacaaaataataaaattcttaA Coding sequence (CDS) from alignment at scaffold_220:192856..193981 >TCONS_00052878 ID=TCONS_00052878|Name=TCONS_00052878|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_220:192856..193981 (Clytia hemisphaerica)
CTAGATTCTCTCAGCATGAAAGGCGATCCCTCCACCAACAGGCTCAGGTA
ACTGGACAAGAGACAGTTGAAATTTCTCATTCCAGATGTTTTCTACAGTG
AGGTGAATGTTATCGTTCTCAAAACTGATTGTCTTGACCCTCTCATCAGC
AGCAAGCTCTTTCAAAAGGATTCCAGTGGATTTTGAATTATCTTCCTCAT
GAAGGATGGGTTTCCAACAATCCCAATTGATGTTTGACTTTGGTTCACAA
TTTGCTCCAATGGTTATCCAACCAGATGGCCCCATGGCTATCAAACCAGA
TGGTCCCATGTTCCCAACCGTTCCTGCTAAGCCCATTAAGGTATTATATC
CGAGCCCTCTAACAACCGCAGCTGTAGTAGATCCTGCTCCAATAGCCCCG
GCTCCTCCTACTCCTGATGCTACTGTAGTTGTGGCAGCAGCCCCACCAGC
TCCTACAGATACAGTTGCAGTTCCTGACCCGATGACTATGGCACCGGCAA
CACCAGCCGTGGCTGCAACAGTCACAGTTGCAATAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052878-exon-scaffold_220-1491911889:192856..193981 | TCONS_00052878-exon-scaffold_220-1491911889:192856..193981 | Clytia hemisphaerica | exon |
| TCONS_00052878-exon-scaffold_220-1510915933:192856..193981 | TCONS_00052878-exon-scaffold_220-1510915933:192856..193981 | Clytia hemisphaerica | exon |
| TCONS_00052878-exon-scaffold_220-1575043694:192856..193981 | TCONS_00052878-exon-scaffold_220-1575043694:192856..193981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:192856..193981 . |
Blast
The following BLAST results are available for this feature:
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