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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052887 ID=TCONS_00052887|Name=TCONS_00052887|organism=Clytia hemisphaerica|type=transcript|length=1509bp
GAATTATTTTTTAACTACCTTACATTTGATCATGTTGTCAAATCTCTCTT
AGCAGAAGGTTTATAGAAGAGAAGTAAGTTTCTTTAGCGATGGCCAATGA
AGATACCAGCAGACGTGCAAACCTAAATTCGCCAATATTGCGTGGAAGCG
AAAATAACAGTATTGAATCTAATACAGATCTTGAGAAATGGAGAGTCCAG
CGTCGGCGAACCTTCCTCGCCTTCTGTCTAATCATCAGTATAAATGGCTT
AGAATGTGGTATCGCTCTACCAACACTGTTCACTTACTTAAAAGAGAATC
TCAAAACACCACATTTGAATATCTGGTATGGTTTAATTGCCAGCTCGTAC
TTCATAACCTCCAATATAGGATGCTTAACAGTCTCCAGGTATGCCGATCA
TACTAAAAATATTCGTTTGGTGCTTATTGCGACATGTCTTTTTGTATCGC
TTGGAAATTTTATTTACGCCACATCAAAATACGCTTTCGTGTTATTGATT
GGTCGTTTAATGCAAGGTTTTGGTGATTCTTTAATATCTACCTTATCCGG
AGAAACGATGCGCATTTACCGTAAAGAAGAAGTGGTTCCTAAAATTTCAA
CATTCATGACAGCTTTCTTCGTATCTTATATTATCAGTCCGATTTTAATT
ACCATCTGTGGTCCGGTGAATTTTGAATTGTACGCTGGTGTACGTCTGGA
AGATGATAATTTTCCCTTTATTATCGTTGGATTTTTATGGCTTCTTGGAA
GTGTGTTATCTTATTTCGTGGTATGTGATTTatcgaaaaataatttattg
gTTCAAAACGAATATGATATCCAAGATGGTAGACAAAGAGGTGAAACCGA
ATCAGAAATTCAATCAAATGTGGAACCACAAGCTAATGATAAAATGCTAC
CACTAAGGAAACTATTATTCAATCGTGATTTAGCGTTTATATATAGTATA
ACATTCGTGGTAAATTATTTTTCAGGTGTTTTTAACGCTATTTATGTTCC
CATCATTGCAAACCGATTTTATGAAATGGCACTCAAGTATGTTGGTATGC
TTTACGCAATGAATGCTATATTCTTTTCACTGACAATGTATTTAATGacc
aaattaaattattttaacaATGAGATTTATTTTATAGTGTTTGGATCATC
AGCTATGGTGATTGCCCTACAAGCCATGACTATGTCAGTGATACTGACTC
AATTTCATTTATTTGGTATTTCAATGTTGATAACATTTGCTATCTGTACT
GGTGTTGGTTGGTCAGTTGAGCAAGTGCTATTAACAGCATTATCGGGTAA
ATTCGTACCCCTAAATATGCAAAGCTATGCCGCGGGCGTACGCCGTACTG
TTGGTAACACGGCTCATATTATTGGTCAGTTTTTAGCACCAAATTTGCAA
GATTACATAGCAGAACATTGCTTGGTGATTTCAGTGGTGTATTTGGGGCT
CATTGGTTACGCTATAATTTACAGAAGAAGATTCACTACGGCCAAAATGA
TAGGATAGG Run BLAST on NCBI protein sequence of TCONS_00052887-protein >TCONS_00052887-protein ID=TCONS_00052887-protein|Name=TCONS_00052887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MANEDTSRRANLNSPILRGSENNSIESNTDLEKWRVQRRRTFLAFCLIIS
INGLECGIALPTLFTYLKENLKTPHLNIWYGLIASSYFITSNIGCLTVSR
YADHTKNIRLVLIATCLFVSLGNFIYATSKYAFVLLIGRLMQGFGDSLIS
TLSGETMRIYRKEEVVPKISTFMTAFFVSYIISPILITICGPVNFELYAG
VRLEDDNFPFIIVGFLWLLGSVLSYFVVCDLSKNNLLVQNEYDIQDGRQR
GETESEIQSNVEPQANDKMLPLRKLLFNRDLAFIYSITFVVNYFSGVFNA
IYVPIIANRFYEMALKYVGMLYAMNAIFFSLTMYLMTKLNYFNNEIYFIV
FGSSAMVIALQAMTMSVILTQFHLFGISMLITFAICTGVGWSVEQVLLTA
LSGKFVPLNMQSYAAGVRRTVGNTAHIIGQFLAPNLQDYIAEHCLVISVV
YLGLIGYAIIYRRRFTTAKMIG Run BLAST on NCBI transcript from alignment at scaffold_220:424718..426226 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052887 ID=TCONS_00052887|Name=TCONS_00052887|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at scaffold_220:424718..426226 (Clytia hemisphaerica)
CCTATCCTATCATTTTGGCCGTAGTGAATCTTCTTCTGTAAATTATAGCG
TAACCAATGAGCCCCAAATACACCACTGAAATCACCAAGCAATGTTCTGC
TATGTAATCTTGCAAATTTGGTGCTAAAAACTGACCAATAATATGAGCCG
TGTTACCAACAGTACGGCGTACGCCCGCGGCATAGCTTTGCATATTTAGG
GGTACGAATTTACCCGATAATGCTGTTAATAGCACTTGCTCAACTGACCA
ACCAACACCAGTACAGATAGCAAATGTTATCAACATTGAAATACCAAATA
AATGAAATTGAGTCAGTATCACTGACATAGTCATGGCTTGTAGGGCAATC
ACCATAGCTGATGATCCAAACACTATAAAATAAATCTCATtgttaaaata
atttaatttggtCATTAAATACATTGTCAGTGAAAAGAATATAGCATTCA
TTGCGTAAAGCATACCAACATACTTGAGTGCCATTTCATAAAATCGGTTT
GCAATGATGGGAACATAAATAGCGTTAAAAACACCTGAAAAATAATTTAC
CACGAATGTTATACTATATATAAACGCTAAATCACGATTGAATAATAGTT
TCCTTAGTGGTAGCATTTTATCATTAGCTTGTGGTTCCACATTTGATTGA
ATTTCTGATTCGGTTTCACCTCTTTGTCTACCATCTTGGATATCATATTC
GTTTTGAAccaataaattatttttcgatAAATCACATACCACGAAATAAG
ATAACACACTTCCAAGAAGCCATAAAAATCCAACGATAATAAAGGGAAAA
TTATCATCTTCCAGACGTACACCAGCGTACAATTCAAAATTCACCGGACC
ACAGATGGTAATTAAAATCGGACTGATAATATAAGATACGAAGAAAGCTG
TCATGAATGTTGAAATTTTAGGAACCACTTCTTCTTTACGGTAAATGCGC
ATCGTTTCTCCGGATAAGGTAGATATTAAAGAATCACCAAAACCTTGCAT
TAAACGACCAATCAATAACACGAAAGCGTATTTTGATGTGGCGTAAATAA
AATTTCCAAGCGATACAAAAAGACATGTCGCAATAAGCACCAAACGAATA
TTTTTAGTATGATCGGCATACCTGGAGACTGTTAAGCATCCTATATTGGA
GGTTATGAAGTACGAGCTGGCAATTAAACCATACCAGATATTCAAATGTG
GTGTTTTGAGATTCTCTTTTAAGTAAGTGAACAGTGTTGGTAGAGCGATA
CCACATTCTAAGCCATTTATACTGATGATTAGACAGAAGGCGAGGAAGGT
TCGCCGACGCTGGACTCTCCATTTCTCAAGATCTGTATTAGATTCAATAC
TGTTATTTTCGCTTCCACGCAATATTGGCGAATTTAGGTTTGCACGTCTG
CTGGTATCTTCATTGGCCATCGCTAAAGAAACTTACTTCTCTTCTATAAA
CCTTCTGCTAAGAGAGATTTGACAACATGATCAAATGTAAGGTAGTTAAA
AAATAATTC Coding sequence (CDS) from alignment at scaffold_220:424718..426226 >TCONS_00052887 ID=TCONS_00052887|Name=TCONS_00052887|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_220:424718..426226 (Clytia hemisphaerica)
CTATCCTATCATTTTGGCCGTAGTGAATCTTCTTCTGTAAATTATAGCGT
AACCAATGAGCCCCAAATACACCACTGAAATCACCAAGCAATGTTCTGCT
ATGTAATCTTGCAAATTTGGTGCTAAAAACTGACCAATAATATGAGCCGT
GTTACCAACAGTACGGCGTACGCCCGCGGCATAGCTTTGCATATTTAGGG
GTACGAATTTACCCGATAATGCTGTTAATAGCACTTGCTCAACTGACCAA
CCAACACCAGTACAGATAGCAAATGTTATCAACATTGAAATACCAAATAA
ATGAAATTGAGTCAGTATCACTGACATAGTCATGGCTTGTAGGGCAATCA
CCATAGCTGATGATCCAAACACTATAAAATAAATCTCATtgttaaaataa
tttaatttggtCATTAAATACATTGTCAGTGAAAAGAATATAGCATTCAT
TGCGTAAAGCATACCAACATACTTGAGTGCCATTTCATAAAATCGGTTTG
CAATGATGGGAACATAAATAGCGTTAAAAACACCTGAAAAATAATTTACC
ACGAATGTTATACTATATATAAACGCTAAATCACGATTGAATAATAGTTT
CCTTAGTGGTAGCATTTTATCATTAGCTTGTGGTTCCACATTTGATTGAA
TTTCTGATTCGGTTTCACCTCTTTGTCTACCATCTTGGATATCATATTCG
TTTTGAAccaataaattatttttcgatAAATCACATACCACGAAATAAGA
TAACACACTTCCAAGAAGCCATAAAAATCCAACGATAATAAAGGGAAAAT
TATCATCTTCCAGACGTACACCAGCGTACAATTCAAAATTCACCGGACCA
CAGATGGTAATTAAAATCGGACTGATAATATAAGATACGAAGAAAGCTGT
CATGAATGTTGAAATTTTAGGAACCACTTCTTCTTTACGGTAAATGCGCA
TCGTTTCTCCGGATAAGGTAGATATTAAAGAATCACCAAAACCTTGCATT
AAACGACCAATCAATAACACGAAAGCGTATTTTGATGTGGCGTAAATAAA
ATTTCCAAGCGATACAAAAAGACATGTCGCAATAAGCACCAAACGAATAT
TTTTAGTATGATCGGCATACCTGGAGACTGTTAAGCATCCTATATTGGAG
GTTATGAAGTACGAGCTGGCAATTAAACCATACCAGATATTCAAATGTGG
TGTTTTGAGATTCTCTTTTAAGTAAGTGAACAGTGTTGGTAGAGCGATAC
CACATTCTAAGCCATTTATACTGATGATTAGACAGAAGGCGAGGAAGGTT
CGCCGACGCTGGACTCTCCATTTCTCAAGATCTGTATTAGATTCAATACT
GTTATTTTCGCTTCCACGCAATATTGGCGAATTTAGGTTTGCACGTCTGC
TGGTATCTTCATTGGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052887-exon-scaffold_220-1491911889:424718..426226 | TCONS_00052887-exon-scaffold_220-1491911889:424718..426226 | Clytia hemisphaerica | exon |
| TCONS_00052887-exon-scaffold_220-1510915933:424718..426226 | TCONS_00052887-exon-scaffold_220-1510915933:424718..426226 | Clytia hemisphaerica | exon |
| TCONS_00052887-exon-scaffold_220-1575043694:424718..426226 | TCONS_00052887-exon-scaffold_220-1575043694:424718..426226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:424718..426226 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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