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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052863 ID=TCONS_00052863|Name=TCONS_00052863|organism=Clytia hemisphaerica|type=transcript|length=2492bp
CCTGCTTTGACGAGGTTTTTTCCACGTAGTTGTAAGCTTTTCTCAAAAGA
AATCATGTAACTAAAATCACTCAACATATTTAAAACTATAACATAGAAGT
GTAAAGGTTAACATTCTCGACTTATGTACAGGTGGCTTGGCAAGTTGATG
ATTTGCCCCGGTTGACCCGTACCATGCAAGGGGAACTGGGTGTCAATACA
CTGTTACACAAGAGTGTTCAGAATTATGTCATACATTGTATCTGCTTTGG
TGATGTTGCTCACATTTTATGAGACTGGCAAGAGCAATCATCCCCCCCCC
CAATTCAAGTGATGTCAAATTTTCTCACAAACCCCCCTGGATGtttgaat
attttataaaaGCTATTgcttagaatttcaaaatttgtcttTATATGCCT
Gacagaaaatgcaaaatttatttcaaaaaaagttgctgcttttttcatga
aaattttttctattatagaatttttgttttcattcttaGACCTATTGTTT
GGCTAGCAAATCCCATCTTCCTCACTCACATGGTTGATATTATTACCGAA
GATGACTGATGATCAGATAGTCATAAAGTATGAAGAATCCTttaccaaca
acaataacaacctGAACAATGAAGGTTCTTCATCACAATCAGAGCGGTCA
CCCTCGTCACCTTTAGGCTTGTCAGAACTAGAGAGTTCAACAACATTGGG
CAACATAGCTCAAAATGTGAACCCTAATGACAAAATGGCCATCTACCAAC
ATCCATTGTTTCCACTTTTACGCTTGCTTTTTGAAAAGTGTGAATCTGCA
ACCAAGTCTATTGACAATGCTGACTCTCTCTGTTTTGAAGCTGAGATGAA
AGCCTACATCACGGAAATGGCAAAAGTCAACAAACCTTTCTTCACAGATA
ATGTTgaagttgacactttgATGCTGAAATCACTTCAAGTCTTGGCTATC
CACCTTCTGGAACTTGGAAAAGTGAATGAATTATGCAAGGACTTTTGTAC
AAGATACATATCGTGCTTAAAAGGAAAGTTGAACAGTGAAAATATTATGA
GAACATTAGACATTCAAAACACACCACCTGGCTCACCTACTTCTCCTAAG
AATCCCACACAACCTATGTCAGACGTCACAATGGTTGGATCTACAATTGA
TGCTTCTATTCTAGCTCCACCAAAAACACCAACAGCTGTCCCAGTAAATG
GTCGAAGCTCTTCAACTTCATCTTTAGAAAATAACAACACTACTTTGAAA
GAAGACTTCTCGATTCATCGCTCAATGTCTGTTGACACTCCAAGTTTTAT
TGGTGCAGCTGGATTGGCAACACCAATGTCGCCTGAACAACTGACAGGCT
TTCTTACCAAGAAGAACAAGGGTGGTAAAAGGGGAACACTTCCAAAAGTA
GCAACAAATGTACTGAAAGCATGGCTGTTCCAACACTTAGTTCATCCCTA
TCCATCTGAGGAAGAGAAGAAGCAACTAGCAgtacaaaccaacctttcca
tattaCAAGTCAATAATTGGTTCATCAATGCACGTCGCCGTATTATTCAA
CCCATGCTTGATTCCTCCAGCACTGTCTTGAAGAACAACAAAAAACCTAA
ACAACCACGGAACGCAGCTCAAAAGGGCTGGGCAAGCACCATGGAAGAAC
TTAGCACAACCAATAGACCTGGCCCTTTAAGTCCTCCAGCTCAACAACCT
GTACGATACATGATGAGTCCTGTCACTTCTTCGGCACCTGGTCCAGTCTT
ACTTAACCTTGGAGCACaatcgacaaaccaaccttccACAACACAATCCA
TGTTAATGAGTCCGGTACAGTTTGTTCAAGTCAACCAGATCCCTTCTATG
CAGAGCATACAGGCTGCTACAGGCTACCTACCACCTCACACTGCCAGCAC
ACAAACCTCATTCCCCTCTACCACTAATGCTAATTCAGTAGAAACCTCTT
CTAAGGATACATGAGATTGTTTCATTGGTGGAAACTTTTCATTAtggaaa
aaaaacgaaaaatgaaagatttttttatatgttttgtgGTAGTTTATCCT
GTTTTAATATAGTGTTTATTAtttgctttgtatttttgatgtctttattt
ttatttttttgtgtccCTTTAATGTTAACGGTAGTTTGGCTAACGCTTCA
GGTTGACAGACCAGATTTGAAAACACAGTAGGTATCATATCTccttatgc
ttataaaaatagaTTAGGGTGTCCTCACACTTTGAATGTCCTATCTAACA
TTTTTTGAAGGTAGCAAATATAAAGTTCTattaggcttttccagaaaaaa
attaaatatcagGGGTGAAGGATATAACATCTTTTATAAATTTACCCCTC
GGACATTGTGAATTATGACCCCGAACAAGCAtaagttgaccccctggaca
ttaaAAATAACCCTTAAACCGAGCAAAATTAatcccaaacagagcaagtt
taccccctggacagGGCAAGTTTTGTAGATCCTTCACTACCC Run BLAST on NCBI transcript from alignment at scaffold_220:477673..480980- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052863 ID=TCONS_00052863|Name=TCONS_00052863|organism=Clytia hemisphaerica|type=transcript|length=3308bp|location=Sequence derived from alignment at scaffold_220:477673..480980- (Clytia hemisphaerica)
CCTGCTTTGACGAGGTTTTTTCCACGTAGTTGTAAGCTTTTCTCAAAAGA
AATCATGTAACTAAAATCACTCAACATATTTAAAACTATAACATAGAAGT
GTAAAGGTTAACATTCTCGACTTATGTACAGGTGGCTTGGCAAGTTGATG
ATTTGCCCCGGTTGACCCGTACCATGCAAGGGGAACTGGGTGTCAATACA
CTGTTACACAAGAGTGTTCAGAATTATGTCATACATTGTATCTGCTTTGG
TGATGTTGCTCACATTTTATGAGACTGGCAAGAGCAATCATCCCCCCCCC
CAATTCAAGTGATGTCAAATTTTCTCACAAACCCCCCTGGATGTTTGAAT
ATTTTATAAAAGCTATTGCTTAGAATTTCAAAATTTGTCTTTATATGCCT
GACAGAAAATGCAAAATTTATTTCAAAAAAAGTTGCTGCTTTTTTCATGA
AAATTTTTTCTATTATAGAATTTTTGTTTTCATTCTTAGACCTATTGTTT
GGCTAGCAAATCCCATCTTCCTCACTCACATGGTTGATATTATTACCGAA
GATGACTGATGATCAGATAGTCATAAAGTATGAAGAATCCTTTACCAACA
ACAATAACAACCTGAACAATGAAGGTTCTTCATCACAATCAGAGCGGTCA
CCCTCGTCACCTTTAGGCTTGTCAGAACTAGAGAGTTCAACAACATTGGG
CAACATAGCTCAAAATGTGAACCCTAATGACAAAATGGCCATCTACCAAC
ATCCATTGTTTCCACTTTTACGCTTGCTTTTTGAAAAGTGTGAATCTGCA
ACCAAGTCTATTGACAATGCTGACTCTCTCTGTTTTGAAGCTGAGATGAA
AGCCTACATCACGGAAATGGCAAAAGTCAACAAACCTTTCTTCACAGATA
ATGTTGAAGTTGACACTTTGGTAAGATTCTTCTTCCCCTTTTATCATATT
ACTTACTGTTTTGTTTTTTTTCTTACAAAAGCTTTACTCCATTTTCAAGC
ATTCCCAAAATGAATAGATAATTTTGGTAAAGGTAGTGCATAAGTTAGGT
AATAAGAGGACGCCTTCCTAACAAGTTCAGATCAAAGAGATCTAGAGTAA
TTGCTTTCAGAAAAAACTTACAAGGGATTTGATAGCAATGCCTAAAATGT
CCAATATGAAAATACATAAAAAATATTGATAGTATATCATCTATAGAATG
AATACCTTTATTCCTTTGATCATAGATGCTGAAATCACTTCAAGTCTTGG
CTATCCACCTTCTGGAACTTGGAAAAGTGAATGAATTATGCAAGGACTTT
TGTACAAGATACATATCGTGCTTAAAAGGAAAGTTGAACAGTGAAAATAT
TATGAGAACATTAGACATTCAAAACACACCACCTGGCTCACCTACTTCTC
CTAAGAATCCCACACAACCTATGTCAGACGTCACAATGGTTGGATCTACA
ATTGATGCTTCTATTCTAGCTCCACCAAAAACACCAACAGCTGTCCCAGT
AAATGGTCGAAGCTCTTCAACTTCATCTTTAGAAAATAACAACACTACTT
TGAAAGAAGACTTCTCGATTCATCGCTCAATGTCTGTTGACACTCCAAGT
TTTATTGGTGCAGCTGGATTGGCAACACCAATGTCGCCTGAACAACTGAC
AGGCTTTCTTACCAAGAAGAACAAGGGTGGTAAAAGGGGAACACTTCCAA
AAGTAGCAACAAATGTACTGAAAGCATGGCTGTTCCAACACTTAGTTGTA
TGTGACTTTCTTTTTAAAACTCTTATTTACAAAGAGGTATTAGCGAACAT
AATCAAATCCAAATTTCATTGGTCAAGGTGAACATTTTTAGGTTAACATA
CAAGTATATTGAACTGGAATTTGTCCTTGACTTTTACTCTATCTCAAACT
TTAACTTTTATTTAACTTTCTCATTTCAGCATCCCTATCCATCTGAGGAA
GAGAAGAAGCAACTAGCAGTACAAACCAACCTTTCCATATTACAAGTCAA
TAATTGGTATTTTGTTATTCTTGTACTGTAAAGTCTTTTTACAAAATAAA
ACACAATTTGTAGTCTTTAAATACCATACACCTGAGGGAAAAAAGGGGCT
AACCCTTCAGAAAATGATTTTGTCTGGATGAATTTATGACTGTTAAATTG
TGAAGAACTTTGATTTAGAAAGGAGTGCATTTTTCACCTTTGAATTTCAT
GCAAGAATTTTACTTCTTGTTGTGTGGGAAAAAATTATTCACGTTTTAAG
GTGTGGCTGGGTGATTATTTATTTTCTCCTGCGTTTTTTGGTTTTGAAAA
ATATGAAAATAAAAAGAATGGACGTTTCGTTTCAGGTTCATCAATGCACG
TCGCCGTATTATTCAACCCATGCTTGATTCCTCCAGCACTGTCTTGAAGA
ACAACAAAAAACCTAAACAACCACGGAACGCAGCTCAAAAGGGCTGGGCA
AGCACCATGGAAGAACTTAGCACAACCAATAGACCTGGCCCTTTAAGTCC
TCCAGCTCAACAACCTGTACGATACATGATGAGTCCTGTCACTTCTTCGG
CACCTGGTCCAGTCTTACTTAACCTTGGAGCACAATCGACAAACCAACCT
TCCACAACACAATCCATGTTAATGAGTCCGGTACAGTTTGTTCAAGTCAA
CCAGATCCCTTCTATGCAGAGCATACAGGCTGCTACAGGCTACCTACCAC
CTCACACTGCCAGCACACAAACCTCATTCCCCTCTACCACTAATGCTAAT
TCAGTAGAAACCTCTTCTAAGGATACATGAGATTGTTTCATTGGTGGAAA
CTTTTCATTATGGAAAAAAAACGAAAAATGAAAGATTTTTTTATATGTTT
TGTGGTAGTTTATCCTGTTTTAATATAGTGTTTATTATTTGCTTTGTATT
TTTGATGTCTTTATTTTTATTTTTTTGTGTCCCTTTAATGTTAACGGTAG
TTTGGCTAACGCTTCAGGTTGACAGACCAGATTTGAAAACACAGTAGGTA
TCATATCTCCTTATGCTTATAAAAATAGATTAGGGTGTCCTCACACTTTG
AATGTCCTATCTAACATTTTTTGAAGGTAGCAAATATAAAGTTCTATTAG
GCTTTTCCAGAAAAAAATTAAATATCAGGGGTGAAGGATATAACATCTTT
TATAAATTTACCCCTCGGACATTGTGAATTATGACCCCGAACAAGCATAA
GTTGACCCCCTGGACATTAAAAATAACCCTTAAACCGAGCAAAATTAATC
CCAAACAGAGCAAGTTTACCCCCTGGACAGGGCAAGTTTTGTAGATCCTT
CACTACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052863-exon-scaffold_220-1575043694:480061..480980 | TCONS_00052863-exon-scaffold_220-1575043694:480061..480980 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1575043694:479234..479755 | TCONS_00052863-exon-scaffold_220-1575043694:479234..479755 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1575043694:478975..479051 | TCONS_00052863-exon-scaffold_220-1575043694:478975..479051 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1575043694:477673..478645 | TCONS_00052863-exon-scaffold_220-1575043694:477673..478645 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1510915933:480061..480980 | TCONS_00052863-exon-scaffold_220-1510915933:480061..480980 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1510915933:479234..479755 | TCONS_00052863-exon-scaffold_220-1510915933:479234..479755 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1510915933:478975..479051 | TCONS_00052863-exon-scaffold_220-1510915933:478975..479051 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1510915933:477673..478645 | TCONS_00052863-exon-scaffold_220-1510915933:477673..478645 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1491911889:480061..480980 | TCONS_00052863-exon-scaffold_220-1491911889:480061..480980 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1491911889:479234..479755 | TCONS_00052863-exon-scaffold_220-1491911889:479234..479755 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1491911889:478975..479051 | TCONS_00052863-exon-scaffold_220-1491911889:478975..479051 | Clytia hemisphaerica | exon |
| TCONS_00052863-exon-scaffold_220-1491911889:477673..478645 | TCONS_00052863-exon-scaffold_220-1491911889:477673..478645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:477673..480980 - |
Blast
BLAST of TCONS_00052863 vs. Swiss-Prot (Human)
Match: PKNX1 (Homeobox protein PKNOX1 OS=Homo sapiens GN=PKNOX1 PE=1 SV=3) HSP 1 Score: 225.328 bits (573), Expect = 8.471e-65 Identity = 136/321 (42.37%), Postives = 184/321 (57.32%), Query Frame = 3
Query: 729 DKMAIYQHPLFPLLRLLFEKCESATKSIDNADSLCFEAEMKAYITEMAKVNKPFFTDNVEVDTLMLKSLQVLAIHLLELGKVNELCKDFCTRYISCLKGKLNSENIMRTLDIQNTPPGSPTSPKNPTQPMSDVTMV----GSTIDASILAPPKTPTAVPVNGRXXXXXXXXXXXXXXKEDFSIHRSMSVDTPSFIGAAGLATPMSPEQL-------------TGFLTKKNKGG---KRGTLPKVATNVLKAWLFQHLVHPYPSEEEKKQLAVQTNLSILQVNNWFINARRRIIQPMLDSSSTVLKNNKKPKQPRNAAQKGW 1631
DK AIY+HPLFPLL LLFEKCE +T+ + S F+ +++ ++ + K KPFF ++ E D LM+K++QVL IHLLEL KVNELCKDFC+RYI+CLK K+NSE ++ + PGSP SP Q S +T G + AS L A G ++++ ++V TP + +SP + + ++ G KRG LPK ATNV+++WLFQH+ HPYP+E+EKKQ+A QTNL++LQVNNWFINARRRI+QPMLDSS + KK Q+ W
Sbjct: 54 DKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLL------SGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVAGG-------------------TVYQPVTVVTPQ---GQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFW 346
The following BLAST results are available for this feature:
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