TCONS_00052959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052959
Unique NameTCONS_00052959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052959 ID=TCONS_00052959|Name=TCONS_00052959|organism=Clytia hemisphaerica|type=transcript|length=620bp
tttttttttcatatttttagtttttcttttactgTAGAAAGAAGAATAGT
AATAAAACACAACCATGATGAAATTGTATAGTTTCTTGATGATTTCCACC
ATCTTGGCTTTACACCAACAAGGGTGTTATGCACGTGGCCGGGGCGGAGC
ATTTGCAAGTTACACAGAGCGTATGAAACACAATTTGAGGATTTCTTCCA
TCGGCGATGCTTGTAAATTCACTTCATATTATCCAGGAGGTGCTAAAGTC
ACTATTGACAATGTTGAAGTACCAGTTGCAAAAGTGGAATCTAAAGGATT
GTACACTATCTTTGTTGGTAGTGAGGAAGAGATGGGAGCTCTTGTATCGG
AGACATTATCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCACTATTCAA
CATATCAAAGAGATTTCAAGACTTGCCAACGTTAACCCTACCCTTAccgT
CTTTACCACCATGATAAACTTGGCTTTCCCGTCAACCACCACCGATGACG
TTTTAAAAGCGACAAATGACGCCCTTCTCAAACTGACCAATCAAATGAAT
CAACAATTCGAGAATGCTAAATTGTATATTGATGAAAAGGTTTTGTCGAC
CAAAAAACAAGACTTAAGGG
Run BLAST on NCBI

protein sequence of TCONS_00052959-protein

>TCONS_00052959-protein ID=TCONS_00052959-protein|Name=TCONS_00052959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
MMKLYSFLMISTILALHQQGCYARGRGGAFASYTERMKHNLRISSIGDAC
KFTSYYPGGAKVTIDNVEVPVAKVESKGLYTIFVGSEEEMGALVSETLSK
AGLASTAVATIQHIKEISRLANVNPTLTVFTTMINLAFPSTTTDDVLKAT
NDALLKLTNQMNQQFENAKLYIDEKVLSTKKQDLR
Run BLAST on NCBI

transcript from alignment at scaffold_222:208826..212869-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052959 ID=TCONS_00052959|Name=TCONS_00052959|organism=Clytia hemisphaerica|type=transcript|length=4044bp|location=Sequence derived from alignment at scaffold_222:208826..212869- (Clytia hemisphaerica)
TTTTTTTTTCATATTTTTAGTTTTTCTTTTACTGTAGAAAGAAGGTAAGT
TGATTTGTTTATTTTTATTATTTATTCTACTAATTCACGTTTTTCTAAGA
ACATAAGGCTTCGATGGTAAAAATATATAGGTGCAAATTGAGAACATTTT
AGGGCTTTGCGGACTCTAAAACACGCAATTCAATTTACTTAGGACTTTAG
AAAATACTATCAAAATGGTGAAAATAGAAACATTTTAGCATTGTGCTCCC
TCTGAAAATTAGTAACTGTCAAACATCATATAGGCCAAAATTTTAAGAAC
ATATTTTAGGCTTGAAAAACTAAAAAAATTAAGAACATCAAAGGTCTTAT
AAAGTTTAAGATAAAAAACTTGTATTTTTCTCCAATGTTTTTATAGTAAG
TGTATTCTATTTTCGTCTTTCTTATGGCAACCATGTCAATATAATTGAAC
TATTCCCTGCTACGACATCATTACTATAAAAGATCTTTAAAAAAATTTGG
CACTCCTTGGCACTGAAAACTGAATCTTTACTTCTTACTAATTAAAGAGA
TTGGGCTGTTCCATAGAATTTCCATACAGGGGGATGGACGAACCTTTTAA
AGGCAAAGAAAGATTTTTAGAAATGTGTTAATACCCCCAGGAAAATGTCA
ACATTTGCATAATAACCCTTGGTAAAATTCTTTTCATATCTTAAAAGTCA
GTCTTTTGCCCCCTGGAAATTTTAAAACAACCTTTTACCCCCTGGAAAAA
TGAAAAAGTACTTTTTTATACCCCTGGAAATTGTTCTCTGATAAACCTCT
GGAAATGTTCGTCCAACCTCCCCCTGTTTGGATATATAATGGAATGGCCC
ATTGCATCTACAAGATTTCCATTTTTATTGATCTTGTTTATTCCCTTTGC
TCTCTTCTAGAATAGTAATAAAACACAACCATGATGAAATTGTATAGTTT
CTTGATGATTTCCACCATCTTGGCTTTACACCAACAAGGGTGTTATGCAC
GTGGCCGGGGCGGAGCATTTGCAAGTTACACAGAGCGTATGAAACACAAT
TTGAGGGTGAGTAGATAAAGAACTTTCATTTTTATGGAAGGGATAATTAG
ATGGTGAGAGCCTCAGAACTCTTCTCTGGTCCTGAGAGTAAAACCCTTAG
AGATATAACACAATTTGAAATTTCTAAATTGGGTTCTTACGTTGAAATTT
TTTTGTTTTCTTGCAAAAATCCAAAAGCTTGTATTAGCGCTTCGTCGTGC
AAACCTCATGATTAGTACCTCTCTCATTTGACCGAAATTCAATCCCACAA
TCCTTTTCGTCTTAATTTAAAAGTCATAAAAGTTATTATTTTTTCTTTGT
AATTGAATGTAATTTGCGTGCAAGCGTAATAAACGCAAAGGGTGATGGGA
TTGAATTTCAGCCAAACATGAAAATCAATGTCTATTTTTAGATTCGCGAC
GGTATGCTATTACAGTAATACCTCGACTTTGAAAAATAGTCATGCAAATT
TTTTTTGAAGTTTTGCTTTAGGATAATAGAATGTCAAGTACATTTCAAAC
AGTCTGATTATCCCTTTAAACTGTAGGTATTAGGTTTCTATAAGGCATTT
TCCAAGAAACCCTGTCAAATTTCTTTTTTTTTTTCATATTGTGTCTTCAA
ACAATTTTCCATAGAGGGTTGCTGTATAAAGGACAATATAGTGTAAATTA
CAATTATAAGAGCTATAAAATGCTCTGCTACAAAAGCTTGATCTTAGGTA
TGGATATCTGTATGATATTATTTACCAAAGAGTTTCATTATATATAATAA
ATTGGGTCCGTCTAGGTTGTTCTTTTTTAGGTAAGGGGCCCCTATCATTA
ATCAAATGTTTTAATGATCTCTTATTTCCCTGTTTTTAGATTTCTTCCAT
CGGCGATGCTTGTAAATTCACTTCATATTATCCAGGAGGTGCTAAAGTCA
CTATTGACAATGTTGAAGTACCAGTTGCAAAAGTGGAATCTAAAGGATTG
TACACTATCTTTGTTGGTAGTGAGGAAGAGGTATGCTGTATCCAATTTGC
ATATCATATCAACCTCGTCCCCGTGTATCCCAGGCTTTATTTACGTTACT
GATTGACGCCAGAGAATACCCTGGTGTAGCTTCTCAGAAGGGGAACATCT
CAAAACAATACGTAATAACAAATCTGATGTTACAAAAGTTACACTGCAAT
GCAATGGTTTCAAGTCCAGGAACAAATGAAATCTGACGTTTTATCTTTGA
ATTACGTAATCTTACGCGTTCGAAAAACAGACAATGCCAGGGTATTATCT
AGCACTATCAGTAAGCACCAAAAAGCTGATAATGCATAGGGAGCTTAAAT
GCTTTAGATAAATGCAAGCTAGGGTTATTTATGATATGCACCATTGCAAT
GTCTTCTGACATTACATCACAGACCCAATTGCTGATTTGTTGTAAATTAG
TCAATACGAAGATTGACAAAAACTTTGCAGTTATAAAACTTAAAACCTGT
TCCCAAAAAATTGTCAGGTCCTTACTTTTTCAAACATTCCTTGGAAAGAT
AATTTTTAGGTGCTTGTTACAAGCTTCTACAGAATTTTGTATAGAAAAAC
TTTCTGAACAGACTTTAGCATGGAATCGACGTCAAAAGCCTAATCGCAAT
TTTTAATACTTATCATTTATGTTATCCATAGATGGGAGCTCTTGTATCGG
AGACATTATCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCACTATTCAA
CATATCAAAGAGATTTCAAGACTTGCCAACGTTAACCCTACCCTTAGTAA
GTAGTTTCATGGCCTAAATTTCTACCTGTCTGTAAGGTGAAGCCTTGTCT
ATACACAGACCCAGTATCTACGGCTAATTCGTTGCTGTAGAGGGTCGTTT
GTCATTGTCTTGTCTCATTTGAGATTTTTCAAACCGACCGCTGCGATGGA
GTGTTGGTGAGAGAGGGGAGACGACGAGAGAAGTGTAGCTATCTATAAAT
CATACTTCATCGCAGAGGTCTCCAAACGAGAATTTTTTATCAAACAAACA
ATGCGCACAGAGTGCACTACGTAGCGATAAACGTGAAAACGCTGTACATA
TTAATCATGTGATAAAGTTTGGATTATTGTTAAAAAGAACTGTTGGTAAC
ACTTTAAAGGTTTTGTTTTTACACGAGTGTTCCCATTTCATATCAGACAC
ATGTTTCATATCAGGACAGTGTCTGCCTTTTGTTATATCGTGCTGATATA
AGCAAAAATATGTTTTCTTTTCCTCTTTCTGACCAATCTTGCTCCACATT
CATTTCAAAAGGCTTGTAAATCAAAAATTATGAGTAAACAAACGATATCA
CGCTTATTTAAAGACAAAAACTTTAAGGTTTGAGTGATTCCTTAAGGATT
GAAATCGTTAATTTAATCTTGAAGTTCTGGTTTAGACGGCCTTCTTTTCG
CCCTCGCTATTCTAATTGTGGATTTAAGTGTGCAGAAAGTTGACTGTTTA
AAGTAAATGTATTGCCCTCTTTTGACGTCTTCTCTCAATCTATATCAATT
AAAGCAAAGATTGAAACTGTCAACTTTCGCTAATTTTTTGCCTACTCTAA
CTATACCGAGTTTATGTAAGTGTATTTTTCTGCGGTGAAGACGGTAAGGA
CTAAGGTTCTAATTTTGCTAGAACTGACCAGCTGAGGAATCAGTACTTTT
AACGTCCTCGATATTGCGGGTTATTCCAAATCGCTTCAGTCACCCTACCG
TCCTCAAAAGAGCAAATATATAAACTCGATAATAAGAATAAGGATGGCAG
AAAGTCGGCCATCAAAAGTAGAGCTGACTTCACAAATATTGCAAGTTTTA
ATTTTTTAATTTTTTTTCAGCCGTCTTTACCACCATGATAAACTTGGCTT
TCCCGTCAACCACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTT
CTCAAACTGACCAATCAAATGAATCAACAATTCGAGAATGCTAAATTGTA
TATTGATGAAAAGGTTTTGTCGACCAAAAAACAAGACTTAAGGG

Coding sequence (CDS) from alignment at scaffold_222:208826..212869-

>TCONS_00052959 ID=TCONS_00052959|Name=TCONS_00052959|organism=Clytia hemisphaerica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_222:208826..212869- (Clytia hemisphaerica)
CCGTCTTTACCACCATGATAAACTTGGCTTTCCCGTCAACCACCACCGAT
GACGTTTTAAAAGCGACAAATGACGCCCTTCTCAAACTGACCAATCAAAT
GAATCAACAATTCGAGAATGCTAAATTGTATATTGATGAAAAGGTTTTGT
CGACCAAAAAACAAGACTTAAGGATGGGAGCTCTTGTATCGGAGACATTA
TCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCACTATTCAACATATCAA
AGAGATTTCAAGACTTGCCAACGTTAACCCTACCCTTAATTTCTTCCATC
GGCGATGCTTGTAAATTCACTTCATATTATCCAGGAGGTGCTAAAGTCAC
TATTGACAATGTTGAAGTACCAGTTGCAAAAGTGGAATCTAAAGGATTGT
ACACTATCTTTGTTGGTAGTGAGGAAGAGATGATGAAATTGTATAGTTTC
TTGATGATTTCCACCATCTTGGCTTTACACCAACAAGGGTGTTATGCACG
TGGCCGGGGCGGAGCATTTGCAAGTTACACAGAGCGTATGAAACACAATT
TGAGGCCGTCTTTACCACCATGATAAACTTGGCTTTCCCGTCAACCACCA
CCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTCAAACTGACCAAT
CAAATGAATCAACAATTCGAGAATGCTAAATTGTATATTGATGAAAAGGT
TTTGTCGACCAAAAAACAAGACTTAAGGATGGGAGCTCTTGTATCGGAGA
CATTATCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCACTATTCAACAT
ATCAAAGAGATTTCAAGACTTGCCAACGTTAACCCTACCCTTAATTTCTT
CCATCGGCGATGCTTGTAAATTCACTTCATATTATCCAGGAGGTGCTAAA
GTCACTATTGACAATGTTGAAGTACCAGTTGCAAAAGTGGAATCTAAAGG
ATTGTACACTATCTTTGTTGGTAGTGAGGAAGAGATGATGAAATTGTATA
GTTTCTTGATGATTTCCACCATCTTGGCTTTACACCAACAAGGGTGTTAT
GCACGTGGCCGGGGCGGAGCATTTGCAAGTTACACAGAGCGTATGAAACA
CAATTTGAGGCCGTCTTTACCACCATGATAAACTTGGCTTTCCCGTCAAC
CACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTCAAACTGA
CCAATCAAATGAATCAACAATTCGAGAATGCTAAATTGTATATTGATGAA
AAGGTTTTGTCGACCAAAAAACAAGACTTAAGGATGGGAGCTCTTGTATC
GGAGACATTATCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCACTATTC
AACATATCAAAGAGATTTCAAGACTTGCCAACGTTAACCCTACCCTTAAT
TTCTTCCATCGGCGATGCTTGTAAATTCACTTCATATTATCCAGGAGGTG
CTAAAGTCACTATTGACAATGTTGAAGTACCAGTTGCAAAAGTGGAATCT
AAAGGATTGTACACTATCTTTGTTGGTAGTGAGGAAGAGATGATGAAATT
GTATAGTTTCTTGATGATTTCCACCATCTTGGCTTTACACCAACAAGGGT
GTTATGCACGTGGCCGGGGCGGAGCATTTGCAAGTTACACAGAGCGTATG
AAACACAATTTGAGGCCGTCTTTACCACCATGATAAACTTGGCTTTCCCG
TCAACCACCACCGATGACGTTTTAAAAGCGACAAATGACGCCCTTCTCAA
ACTGACCAATCAAATGAATCAACAATTCGAGAATGCTAAATTGTATATTG
ATGAAAAGGTTTTGTCGACCAAAAAACAAGACTTAAGGATGGGAGCTCTT
GTATCGGAGACATTATCAAAAGCAGGCTTAGCATCGACAGCTGTCGCCAC
TATTCAACATATCAAAGAGATTTCAAGACTTGCCAACGTTAACCCTACCC
TTAATTTCTTCCATCGGCGATGCTTGTAAATTCACTTCATATTATCCAGG
AGGTGCTAAAGTCACTATTGACAATGTTGAAGTACCAGTTGCAAAAGTGG
AATCTAAAGGATTGTACACTATCTTTGTTGGTAGTGAGGAAGAGATGATG
AAATTGTATAGTTTCTTGATGATTTCCACCATCTTGGCTTTACACCAACA
AGGGTGTTATGCACGTGGCCGGGGCGGAGCATTTGCAAGTTACACAGAGC
GTATGAAACACAATTTGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033444XLOC_033444Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052959-exon-scaffold_222-1575043694:212826..212869TCONS_00052959-exon-scaffold_222-1575043694:212826..212869Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1575043694:211814..211959TCONS_00052959-exon-scaffold_222-1575043694:211814..211959Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1575043694:210840..210980TCONS_00052959-exon-scaffold_222-1575043694:210840..210980Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1575043694:210074..210188TCONS_00052959-exon-scaffold_222-1575043694:210074..210188Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1575043694:208826..208999TCONS_00052959-exon-scaffold_222-1575043694:208826..208999Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1510915933:212826..212869TCONS_00052959-exon-scaffold_222-1510915933:212826..212869Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1510915933:211814..211959TCONS_00052959-exon-scaffold_222-1510915933:211814..211959Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1510915933:210840..210980TCONS_00052959-exon-scaffold_222-1510915933:210840..210980Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1510915933:210074..210188TCONS_00052959-exon-scaffold_222-1510915933:210074..210188Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1510915933:208826..208999TCONS_00052959-exon-scaffold_222-1510915933:208826..208999Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1491911889:212826..212869TCONS_00052959-exon-scaffold_222-1491911889:212826..212869Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1491911889:211814..211959TCONS_00052959-exon-scaffold_222-1491911889:211814..211959Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1491911889:210840..210980TCONS_00052959-exon-scaffold_222-1491911889:210840..210980Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1491911889:210074..210188TCONS_00052959-exon-scaffold_222-1491911889:210074..210188Clytia hemisphaericaexon
TCONS_00052959-exon-scaffold_222-1491911889:208826..208999TCONS_00052959-exon-scaffold_222-1491911889:208826..208999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052959-proteinTCONS_00052959-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:208826..212869 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172641	0.589233	0.586419	0.28686	7.45012	5.97917	4.21719	3.4286	3.27333	1.98222	18.2779	31.3315	26.7903	21.7613	21.959	63.3846	30.7802	31.7267	0	0	22.2003	23.8146	13.8563	15.6567	8.89714	10.8355	10.2975	2.77903	0.0958091	0.585686
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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