TCONS_00052964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052964
Unique NameTCONS_00052964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052964 ID=TCONS_00052964|Name=TCONS_00052964|organism=Clytia hemisphaerica|type=transcript|length=506bp
TTCTTGTCATTGGATGAACAACCGGTAGACGAAATCGTTTGGTATCCtta
caataaaacaaaaatcattTATGGTTACTTAACCAATCTACCGAGTAATG
TGTACTATCGCGAAACGAATGATACCGACATACTAGAAAAGTATTTATCA
GAAAAGAATATCTTGACCACCATAGACAGTGTGGTAGTCATTACTTTTCA
TACGGACAAGAGAGGTGACATCCCAGGCTATCATCTTCACACCAATAACT
TTCAAATTGTTTTGGGAAGCCGGTATAGAGATTCAGCCTATGTTGGTTTC
ATATACCGCCGTTTGGATACACTCTTCGGCGTTGTCGGTTTTTCGGTTCC
AGGATGTTTCTCTTATGAATTCACTAAACCCCTAGAAACACATTATCTAC
CAAGTCAAAAAGGTGGCAAACAAGGTTTCTTTGGATCGTGGAGATGCTAC
GATTTCGAGACAGCAATGTTACCGAACGGTATTCCAAGTGGTGATCAGTT
TTACGG
Run BLAST on NCBI

transcript from alignment at scaffold_222:250056..254742-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052964 ID=TCONS_00052964|Name=TCONS_00052964|organism=Clytia hemisphaerica|type=transcript|length=4687bp|location=Sequence derived from alignment at scaffold_222:250056..254742- (Clytia hemisphaerica)
TTCTTGTCATTGGATGAACAACCGGTAGACGAAATCGTTTGGTATCCTTA
CAATAAAACAAAAATCATTTATGGTTACTTAACCAATCTACCGAGTAATG
TGTAAGATCATTTTAACGTATCAAAGTATTTATCCGACGGAAATTTGAAA
ACGGAAAACTCACGGCGTTGAATTCAGAACAGACAAGCTGCATAATCAAG
AAGGACATTTCACGACGGAAAACACACGAAGGACATTTCACAACGGAAAA
CACGCGACAGATAATTCACAATGGGAAACTCACGGTGGACAAACTTACGA
AGGACACCTCACGACGGAAAATAAACGACATAAAATTCACGACGGACATG
AAGGGTACCTCACGATGGTAAAACACACGACGGACAAACTTACGAAGGGC
ACCTCACGACGGACAAACTTACGAAGGGCACCTCACGACGGAAAACACAC
GACGGACAAACTTATGAAGGGCACCTAACGACGGTAAAACACACGACGGA
CAAACTTATGAAGGACACCTCACGACGGAAAAACTTACGAAGGATACCCC
ACGACAGAAAACACACGACGGACAAACTTATGAAGGACACCTCACGACAG
AAAACACACGACGGACAAACTTATGAAGGACATCTCACGACAGAAAATGC
ACGACAGAAAATTCACGACATAAAATTCACGACGGAAAACACACGTCGGA
CAAACTTATGAAGGACACCCCACGACAGAAACACACGACGGACAAACTTA
TGAAGGACACCTCACGATGGTAAAACACACGACGGACAAACTTATGAAGG
ACACCTCACGACAGTAAACACACGACGGACAAACTTATGAAGGACACCTC
ACGACAGGAAACACACGACGGACAAAATTATGAAGGACACCTCACGACAG
TAAACACACGACGGACAAACTTATGAAGGACACCTCACGACAGAAAACAC
ACGAAGGACAAACTTATGAAGGACACTTCACGACAAAAAAAAACACATAA
TTCACGAATCTCTCCCCCATTTTATTAAGCAACACTTCAATCACATCAGT
AAAAATACAGATAACTAAAAATCAGATAGAGCTTGGTTATTTCTTTGCAT
TGGTTAAAATTTACACATATCCTATTTAGTCCTAACGGTCTGTACCAATC
TGATATTTCATGTATACATTTAGCATTTATCTTTCTCGTTTAGCTTACAA
TTCCTACTGTCTGCTATTTACAGACAGTCCATCTTATAGAAAAGAGTACC
CCCACTCAATTCGATCACAAGTGCTAGTGCATGCTGTTTTAAGAGTTGTC
TGTTCTTTAGAAACTCCTATATTTGACATTGTTCTCATTCCAGGTACTAC
CACGAAACAAATGCACCGATATACTAGAAAAACATTTATGACTCTCATTG
GCTAAAAGTGCTTGCCATTTAGAAATTGTCTGTTTTTAGAATCTCCTATA
ATTGGGTCATTCTATTTTATATCCATACAGGGGGTGGACGAACATTTCCA
GAGGGTTATCCGAGAAAAATTTCAAGGGGGGCTTTTTTATTTTTCCAAGG
GGGTAAAAAGTTATTCTTAAATTTCCACGGGGTAAAAGACTGATTTCAGT
TCGTTCTCTTTCACTTTAAGGTATGAAAAGAATCCATTTTCCAGGGGGTA
AAGACACATTTTCAAAATAATTTTTTTTGATAGTAACGTAGAAAAAGATA
GTAACACCTCAATACCAACATCACATTTATTGTTAAAATTGATATTTTCT
CTATTATAGGTACTATCGCGAAACGAATGATACCGACATACTAGAAAAGT
ATTTATCAGAAAAGAATATCTTGACCACCATAGACAGTGTGGTAGTCATT
ACTTTTCATACGGACAAGAGAGGTGACATCCCAGGCTATCATCTTCACAC
CAATAACTTTCAAATTGTTTTGGGAAGCCGGTATAGAGATTCAGCCTATG
TTGGTTTCATGTAAGTAATATTTCATTTTTGTAAATTGTCTCTTCACAAT
TAGAGTGCTCGATACTATATACTGCGGAGCGAATAACCTTGTCAAAAGAA
ACATTATTTTTCTATTCAAATATACTTGTGTATTAAAAATTGACATTTTC
AAGACGACTCACTATTGAATTTAACAATCTTGTACAAATTTCCATAACGT
ATATTAATTTTCTAAAAATCCAGCTGAAAATTGCATCTATGCATGAAATC
AGTGGTATTGGAATAGAAAAATAATGTTTCTTTTAATAAAGTTAAGTAAT
TTTTGATATTGTAAAGTCTTTACGCAGTCTACAGTTGACTAGAATTTTTT
CATTCAATGATTTTCGAATCCTTTTAGAAAGTCCGTACAAAGATTGAACT
TATATGGCTTATATTGAATAGGGCTCTTCTTGCAAACAAAATTACATAGA
GGTTGAGGATTTAACATTTTTCAGGGTTTTTGATCACCCGGACTAGAGAT
TTCAACCCGGAAATCATACCGGTCAGTACTCTAAAGACCTAAATTTTACC
CACGCTCAAGGAAAACTGACAACTTGTTTCCTACCCCCGGCACAAAGTCA
ACCGCCCTTGTAATTTTTTTTGAAAACCTAAACCTTTGCAATAAGTATAT
GTAATCACATGATAACCAGTGCAATTCGAGAATAATTGCACGAGCGATTT
TTTTGTTATTAATTTTCGAAACAAAAAAATCAAGAGTGCAATTTTCGAAT
TATTATTATATGATTACGAGTTGATCGCACATTTTTTCACTACTTTTTCC
CCGGTAGGAAAGTAAATTAAAGAAATTACACTGAAAGTTTTATATTTTTC
TCTTCTCACTTTGTTTTTCTTTTATTGTTGTTTATGGATTTTCTCTCTCA
CAAAATGAATTTCGAATGCAATTAAAACGTTCGAAGAAAACAAATTGTAA
AAATTGGCGTGACATCGAAGAGTGTGATTAACGATTAATTGCTCTCTTTG
AAGGCGCGCCAAATAAGAAAAAATAACTCATCGTGCGATTAAGTCTTAAA
ACAATCTACAGATTGGTTGAGATGTTATAAGCATAAGGATCTCGTGAGTT
CCGTCCCAGACGATTGCCAGATGATGAAGAGAGGCCTTTCCGACTCGAAA
TTTCTACTTCTAAATTTGGAGAATCCAGGCTAATTCAAACTTCTCACTCT
AATGTTTTAAGCAACTATACAGCGTGTCCTGATAAAAACTGAACAAGATT
TATTTAGATAAAAAGCCATACAATTATCATTTGTATGATTTATTCCTTTA
GGTATTGAACCTATGAATTGAACCAATAAATTTTATTTTGTTACTATAAG
CTCCAGTGAGATATTTAGTTTTGACGGTTTTCCTTTTCTATAAAATGTGT
TCTGCCTTCTTATGGGACACACTGTAGTTAAATTGTTTTTCATAAGTGTT
TCTGTTTCATATCAGACACATATTTCATATCAGGACAGTGTCTACCTATT
GTTATATTATGCTGGTATAAGCAAAAAATGTTTTTCTTTTCCTCCTGACC
AATCTTGCTCCACATCTGTGTCAATCCAATGCGAAAAAGCTTGTGAATTA
AAATTGATGAGTAAGTAAACGACATCACTCTTTATTTTCAGATACCGCCG
TTTGGATACACTCTTCGGCGTTGTCGGTTTTTCGGTTCCAGGATGTTTCT
CTTATGAATTCACTAAACCCCTAGAAACACATTATCTACCAAGTCAAAAA
GGTGGCAAACAAGGTTTCTTTGGATCGTGGAGATGCTACGATTTCGAGAC
AGGTGTGAAGATTAATATTATATTAATTGGGGGACCAACATTGGGGTCCT
TTGACATCTTTTCTTCCTATGACCCGTGGGTGATGAAGGGAGTATTTTAA
GATTGACCTTGTTACATGTAGATGAGACCCTCCTCACTATATAAAAAGGA
CCAATCTTAAATTTAAGGTTAGCTTATTTTTCTCAGACAATAATTTTGAC
CCTTTTGATTTGTCAACGATGATGTTTAAATATGTCGTTCGAAGTAATCA
TTTCATTTGAAACCAAGGTCTGCTCCTGCTGATTTGTCTCGAGAAGTGTT
TTAATTCGTTATCTCTACTTTAACTCCAATTGAAACACCTTCCGGTTGAA
AAATTTCTTATTAAACCATGGAGATGAAATTCAAATTTTTCATTTGCTTA
TAGCTATGTTACCGAAGGGTATTCCAAGTGAAGTGGGATCACCTTTCCCG
ATTCATTTGAGTCTCTTTAACCTCTCAATGTCTCCCTATTAACTCGAACA
AGTTTTCTCATCCCTTCCGTTAATAATGTCTCATAAACCTCACTCCATAA
CTCAGAATTAGGACCTAGAACACGTTTTCACATAGCGTTTTCAAAAACCG
TATACCCCTGTTGATAGGAGGTCCATCCCTTTGTGGCTGAAGATGCTGTT
GCCCCCTGGAATTCCAGGCAATTCTAGGTTTAAACCCCTCTGGAATTTTG
AATTTTAAAAGGATTTAAAAAGCTACCCCCATGGAATTCCAGTTATTTTT
GACATATTTTTGTATCTCCCTCTGGAATTCCGCCACTTATCAAACCTTAC
CCCCCTGGAACGGAAATGGACCTCCTCAACAGGGGGTATACGGTTTCTTT
TTGGAAAAGCCCATTGGAGACGTAACGGCTTTCCTTTCTAATAGCAATGT
TACCGAACGGTATTCCAAGTGGTGATCAGTTTTACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033446XLOC_033446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052964-exon-scaffold_222-1575043694:254642..254742TCONS_00052964-exon-scaffold_222-1575043694:254642..254742Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1575043694:252783..252983TCONS_00052964-exon-scaffold_222-1575043694:252783..252983Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1575043694:250991..251151TCONS_00052964-exon-scaffold_222-1575043694:250991..251151Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1575043694:250056..250098TCONS_00052964-exon-scaffold_222-1575043694:250056..250098Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1510915933:254642..254742TCONS_00052964-exon-scaffold_222-1510915933:254642..254742Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1510915933:252783..252983TCONS_00052964-exon-scaffold_222-1510915933:252783..252983Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1510915933:250991..251151TCONS_00052964-exon-scaffold_222-1510915933:250991..251151Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1510915933:250056..250098TCONS_00052964-exon-scaffold_222-1510915933:250056..250098Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1491911889:254642..254742TCONS_00052964-exon-scaffold_222-1491911889:254642..254742Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1491911889:252783..252983TCONS_00052964-exon-scaffold_222-1491911889:252783..252983Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1491911889:250991..251151TCONS_00052964-exon-scaffold_222-1491911889:250991..251151Clytia hemisphaericaexon
TCONS_00052964-exon-scaffold_222-1491911889:250056..250098TCONS_00052964-exon-scaffold_222-1491911889:250056..250098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:250056..254742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.39835	5.70794	2.23816	2.59074	0.758072	0	0	0	0	0.0345239	0	0.0572569	0.096635	0.240068	1.1339	4.8071	0.0246257	0.594174	0	0.566264	1.74357	4.97922	0	0	0.0894806	0.241999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top