|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052975 ID=TCONS_00052975|Name=TCONS_00052975|organism=Clytia hemisphaerica|type=transcript|length=2332bp
aggtttttaaaaaatgaaaatacatgagacttttttaaaagattgataat
ttttttgcagAATATTGAGATTTGATTTCAAAGTCACCGTAAACCCatat
tttcgaagaaaaaaagaCATAAATCGCGCTACGGCATTTACCGTGTATGG
ATGACATCATGTATTGGATGGTAGCAGCCGTCGTCGTTGACGGTTTTGTC
ATGGCACTAAATATCATTGAACTCATGTTACTGTTACGTCGATGGAAACG
GCTAGATCGTATCGAGCACATTCTATTCAGTTTATGTGTTGCAGACTTAA
TTTGTGGTATAGCCATGTTTGGACAGGACACGTACCAGTTACGAGCTATC
GCTTTAAATTTACCATTAGATATTACAACCACGGAATCATTAATCCTTGA
ATGTTTAATCATCTTCTTCATCCTCGTTTCACATTTCCACGTCACTGCCG
TAGCTATTGAACGAATATTCGCCGTATCGATGCCAATGAGGTATACAGTT
TTCACAACAAAttcttgtaaaattttaactatCAGTTTAGTATGGGTTAT
TGCTTTAATCATCGCACCCATACTAACTTCGACATCAAAAGCTTACCAAT
CAGGGCAATACGTTTTAGCATCAGCCATTATCATATGTTGTACATTAGTA
TTTTTCAGCTATATGGCACTGGTGGTGCTTCTCATACGTCGGGAAAGAAC
AATGCGTTCTCTTTTGGAGCCGGAATTCAAGCGCCAGTTACGGGATCGCC
GGACAACAATTTTCTGTCTCGTATTCGGGTTTTCGTTCTTAATTTGTATG
CTACCTTACGCTATCGGGTTACTGCAACAATCTTTATTTCACGAAACACA
GATTTTATTATTAACAGCATATCATTTGGTCAACCCTATTGTTTATTTtg
tgaaatattattttaatgGGCGTGGTCGATCCAATACCATTACAAGTAAT
TCGAAAATGAGTCATAATAACTTATTAAACCGTTCACCATTGACGACGAG
AAGTACTTTTATTATGCATGGTGATTCAACCAATAGCTTTAAAGCTTGAA
AATTGATTGACCAATGGGTTTTGGGCTGGTGAATGGATTGGCCAATAGCG
TTTGAGCTTGTTAATGGATTAGTGAAGTTCATAATGCACGGTGATTTGAC
CAATATTTGGATTGACCAATAGATTTCGAGCTTGAAAATGGATTGCCCAA
TAGTGTTTGAGCTTGTAAATGTTAATGGGTTGATCAACAGTTCATAAAGC
AAGGTGATTCGACCAATAGTTTCAGGACTTTCAGCTTGACCAATAGCTTT
CGAGCTTGTTAATTGATTGACCAAAGGCTTTAATGTTGTGACACTGGTTA
GACCAATAAAGACGTGCAAGGTTTCAATTTGTGGAGTTTTGAGAATTAGG
gtaattaaatatttttaattaatgatgggctatctttttttaaatcattg
aaAATGATTCACCAGGCTGCGggcaagaaaaattaaaagaaaatccgTGA
AATATTAAATGAATTTACCGCTGTAATCTTTCAATATTTAACtgtaaaaa
gctgaaaattttgtATAAATCAAAAATACACGGTGAATTTTCGTAGGTTT
TTTCCTGCGTTCATCGCTaggttaattttatttttaagaaagaaattttt
tataGGGGATCGAAAGCCATACACTGGCCTttatacaccccttctcacag
gaCCGGCGGGACCCCcttatcgtccccagtggaaaattttactcatgTTT
GtcaaaatatgggaatattaaTCCCCATCGATTTTCAATCGATATTCTTA
CCGCcactgaaaaaatcctaccaggtctgtgagaaggggacgCCTTTATC
TTAGTCCAAACAAACCATTGGTTATTTCTGTTCGTTCGTTTATCTCAGCA
TTACCTTCCAGGAAATGCTTATGCATCGGTTTGGATCCTGCTAGACGAAA
TTTTCAACCATGACAGACGAAATATTGGTCCTGTCAGATACTAAATCTGA
CTTAGGAAGTGGTGAAAATGACCTAAGTCATCTCAGTCAAATAACGATTT
TAACCTATCAGCTATTTTTTCAAATCCTTAGGGATTCTGTGAAGGAGGCT
TTccaagcggtttgcgtgatggcgtgatagggactttcttgtagcgtgat
tacgtgatttggaaattttttcttcgtgattgcgtgatgagaggtcaaaa
cgtgatcgtgaatttgaaaaattttcgagccgtgatacgtgatttggact
ttttcaaaaggATGCGTGATTAGccattttttgctgatttgtgcgatatc
gtgatcagagtttccgccggtggggggggggg Run BLAST on NCBI transcript from alignment at scaffold_222:431698..434029- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052975 ID=TCONS_00052975|Name=TCONS_00052975|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at scaffold_222:431698..434029- (Clytia hemisphaerica)
AGGTTTTTAAAAAATGAAAATACATGAGACTTTTTTAAAAGATTGATAAT
TTTTTTGCAGAATATTGAGATTTGATTTCAAAGTCACCGTAAACCCATAT
TTTCGAAGAAAAAAAGACATAAATCGCGCTACGGCATTTACCGTGTATGG
ATGACATCATGTATTGGATGGTAGCAGCCGTCGTCGTTGACGGTTTTGTC
ATGGCACTAAATATCATTGAACTCATGTTACTGTTACGTCGATGGAAACG
GCTAGATCGTATCGAGCACATTCTATTCAGTTTATGTGTTGCAGACTTAA
TTTGTGGTATAGCCATGTTTGGACAGGACACGTACCAGTTACGAGCTATC
GCTTTAAATTTACCATTAGATATTACAACCACGGAATCATTAATCCTTGA
ATGTTTAATCATCTTCTTCATCCTCGTTTCACATTTCCACGTCACTGCCG
TAGCTATTGAACGAATATTCGCCGTATCGATGCCAATGAGGTATACAGTT
TTCACAACAAATTCTTGTAAAATTTTAACTATCAGTTTAGTATGGGTTAT
TGCTTTAATCATCGCACCCATACTAACTTCGACATCAAAAGCTTACCAAT
CAGGGCAATACGTTTTAGCATCAGCCATTATCATATGTTGTACATTAGTA
TTTTTCAGCTATATGGCACTGGTGGTGCTTCTCATACGTCGGGAAAGAAC
AATGCGTTCTCTTTTGGAGCCGGAATTCAAGCGCCAGTTACGGGATCGCC
GGACAACAATTTTCTGTCTCGTATTCGGGTTTTCGTTCTTAATTTGTATG
CTACCTTACGCTATCGGGTTACTGCAACAATCTTTATTTCACGAAACACA
GATTTTATTATTAACAGCATATCATTTGGTCAACCCTATTGTTTATTTTG
TGAAATATTATTTTAATGGGCGTGGTCGATCCAATACCATTACAAGTAAT
TCGAAAATGAGTCATAATAACTTATTAAACCGTTCACCATTGACGACGAG
AAGTACTTTTATTATGCATGGTGATTCAACCAATAGCTTTAAAGCTTGAA
AATTGATTGACCAATGGGTTTTGGGCTGGTGAATGGATTGGCCAATAGCG
TTTGAGCTTGTTAATGGATTAGTGAAGTTCATAATGCACGGTGATTTGAC
CAATATTTGGATTGACCAATAGATTTCGAGCTTGAAAATGGATTGCCCAA
TAGTGTTTGAGCTTGTAAATGTTAATGGGTTGATCAACAGTTCATAAAGC
AAGGTGATTCGACCAATAGTTTCAGGACTTTCAGCTTGACCAATAGCTTT
CGAGCTTGTTAATTGATTGACCAAAGGCTTTAATGTTGTGACACTGGTTA
GACCAATAAAGACGTGCAAGGTTTCAATTTGTGGAGTTTTGAGAATTAGG
GTAATTAAATATTTTTAATTAATGATGGGCTATCTTTTTTTAAATCATTG
AAAATGATTCACCAGGCTGCGGGCAAGAAAAATTAAAAGAAAATCCGTGA
AATATTAAATGAATTTACCGCTGTAATCTTTCAATATTTAACTGTAAAAA
GCTGAAAATTTTGTATAAATCAAAAATACACGGTGAATTTTCGTAGGTTT
TTTCCTGCGTTCATCGCTAGGTTAATTTTATTTTTAAGAAAGAAATTTTT
TATAGGGGATCGAAAGCCATACACTGGCCTTTATACACCCCTTCTCACAG
GACCGGCGGGACCCCCTTATCGTCCCCAGTGGAAAATTTTACTCATGTTT
GTCAAAATATGGGAATATTAATCCCCATCGATTTTCAATCGATATTCTTA
CCGCCACTGAAAAAATCCTACCAGGTCTGTGAGAAGGGGACGCCTTTATC
TTAGTCCAAACAAACCATTGGTTATTTCTGTTCGTTCGTTTATCTCAGCA
TTACCTTCCAGGAAATGCTTATGCATCGGTTTGGATCCTGCTAGACGAAA
TTTTCAACCATGACAGACGAAATATTGGTCCTGTCAGATACTAAATCTGA
CTTAGGAAGTGGTGAAAATGACCTAAGTCATCTCAGTCAAATAACGATTT
TAACCTATCAGCTATTTTTTCAAATCCTTAGGGATTCTGTGAAGGAGGCT
TTCCAAGCGGTTTGCGTGATGGCGTGATAGGGACTTTCTTGTAGCGTGAT
TACGTGATTTGGAAATTTTTTCTTCGTGATTGCGTGATGAGAGGTCAAAA
CGTGATCGTGAATTTGAAAAATTTTCGAGCCGTGATACGTGATTTGGACT
TTTTCAAAAGGATGCGTGATTAGCCATTTTTTGCTGATTTGTGCGATATC
GTGATCAGAGTTTCCGCCGGTGGGGGGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052975-exon-scaffold_222-1575043694:431698..434029 | TCONS_00052975-exon-scaffold_222-1575043694:431698..434029 | Clytia hemisphaerica | exon |
| TCONS_00052975-exon-scaffold_222-1510915933:431698..434029 | TCONS_00052975-exon-scaffold_222-1510915933:431698..434029 | Clytia hemisphaerica | exon |
| TCONS_00052975-exon-scaffold_222-1491911889:431698..434029 | TCONS_00052975-exon-scaffold_222-1491911889:431698..434029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:431698..434029 - |
Blast
The following BLAST results are available for this feature:
|
