TCONS_00056465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056465
Unique NameTCONS_00056465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1136

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056465 ID=TCONS_00056465|Name=TCONS_00056465|organism=Clytia hemisphaerica|type=transcript|length=1136bp
CTTTACTTTTTTTACTATTGTTTGCTTTTAGATTTTGCGTcctacaaaaa
aaaatatggcTTAAGATAAATATAAAAGCAACCTGTCCGTGACCTTAAAT
CATCAGTCAGTAAAGAAGCTCTTTGGCAAATGAACAAGGATTAAACAAAA
GAGAAACTTTTTGAGAAACAGATACACCGACAAACAGATAGTAATCGGAA
GACATGAAACTGATACAGAATAATTATTTGACGAAAAGaaatattgaatt
tcttttcattGCATTTATTTTGGTCAATGCACAAATTTCAACAGTAGACA
CTTTGACAGCTCCGGCAATCCGAATGCTGGGTAGAAGAATCACAGCGAGA
ATGCGTTTGGAGCAGATGTGCGCTCTCCTAAAAGGAGGTTGTAATGAAAT
CTATAAATATTCAAGTAAACGAGGACGGGATTTGGGCGACGCAACAACCA
GACGAGAAATTGAACAACAAGCGACGAGACGAAATGTTATTCCTCTAAGG
TATAAACCACAAAAAAGAACACTGGAGAGTCTTTTACGGAAACGAGAGAA
CTTGAAATATGTCGTTGTGGAGTACTGAGAACCTTGAAAATAATGGCTTA
GTCAGTCAGCAGCTGAGACCGGTGGCAAGGAGTGGTTTATCAACTGGTAC
ATAACGTTGtctcaacgtttatctaatgttcacaacatccatgtaacgtt
agatgaacgttgaaacaacgtcgtgtgcctgTTGGGGGGATTCAACCAAT
AAGCCCTCTTAACCCATTCAAAAGAGAGTCAAATGAAAGCTATGGACGTT
ACGCAAAAAGTGATTCGAAAAtaaaagatcttcatttttattattttctc
aatatcattttttaatttattttgtttatcaTTGTTAATTTATATAAACC
TGGTGTTACAATAAGGTATCAAAAAGCAGAAATAGAAACGATAGGGgtta
ttataaaattgtttAATCTCAAACAACGACGTCTTAAAGCTGGTCACAGC
TTGATATCCAAGGTTTCTTTACAAaatgtctttttctttctcatttaaGT
TATATTACTTTTAGACTTATTAAGACTTATTATGGCAGAAATCAGAACAA
CtccttcttttcaataatataCCGTGGAGACGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00056465-protein

>TCONS_00056465-protein ID=TCONS_00056465-protein|Name=TCONS_00056465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKLIQNNYLTKRNIEFLFIAFILVNAQISTVDTLTAPAIRMLGRRITARM
RLEQMCALLKGGCNEIYKYSSKRGRDLGDATTRREIEQQATRRNVIPLRY
KPQKRTLESLLRKRENLKYVVVEY
Run BLAST on NCBI

transcript from alignment at scaffold_276:18175..23509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056465 ID=TCONS_00056465|Name=TCONS_00056465|organism=Clytia hemisphaerica|type=transcript|length=5335bp|location=Sequence derived from alignment at scaffold_276:18175..23509- (Clytia hemisphaerica)
CTTTACTTTTTTTACTATTGTTTGCTTTTAGATTTTGCGTCCTACAAAAA
AAAATATGGCTTAAGATAAATATAAAAGCAACCTGTCCGTGACCTTAAAT
CATCAGTCAGTAAAGAAGCTCTTTGGCAAATGAACAAGGATTAAACAAAA
GAGAAACTTTTTGAGAAACAGATACACCGACAAACAGATAGTAATCGGAA
GACATGAAACTGATACAGAATAATTATTTGACGAAAAGAAATATTGAATT
TCTTTTCATTGCATTTATTTTGGTCAATGCACAAATTTCAACAGTAGACA
CTTTGACAGCTCCGGCAATCCGAATGCTGGGTAGAAGAATCACAGCGGTA
AGTAGAACAGTCAAAGCGAGTTTGAACTTTGCAATGTTTTTGTTGTCGAA
ACTTTGAAATTTCCACCCCAAAAGTCAATGGTTTTCCTAGATAAAACTAA
AAGTATCACAGAAGAAATCAAGTATTACTCAATCTCAATTCCATTACCAT
GGAAGAAATTTTTCTAAGATTGCATTTTTTTTCCTCCAAAAGTTGAAAAA
AACAACAAAATTATCAATTCATTTTGCTCATCTTCAAAAAAAAGTTAAGA
ATTTCTAGGACGTGTTATGGAAAACTAAGGCATAGGTCAATGGGAGGCGA
GTATCAAAAAATTTTTCGTCTAAAACAGAAAATTGAATTTTACAAAGCAA
ATTAGTACAGCTTCTTGAATGAAGTTTAGGTGAATTTTTTACAGAATTGT
TAAAGATCAACCTCGCCCCCGTGTATCCCAGACATTATTTACGTTACTTA
TTGACACCAGAGAACACCCTGGTGTTGGCTGATCGAGTTATTATAGGGTA
TCATCTAGCGCTATCAGTAACGGTAAAAAGCTGATTTTAAGCAGGAAACG
AGGTTGGTTAAACATAAAAGTCATTTCATATACCGTAACTTGGTCTAATG
TCGACATTCCTCATCTAATTCCGACACCCTTTTTATCGGCTGAAATAGAA
AGGTCAAAACAGTTTTTATTTGCTTAGTGGTAACAGAGTGATAATCCTTT
TTCAACCAGTGATTCAGGCTTTCATATTTTTCCTGTCTCTAGAAGAGGGA
TGTCGATATTAGACCAACTTACGGTACTTCCCTAAGACGCAAGAACTTTC
AACACTGACTTTAGATGTGGAAGAATGGCGAATATAGATGACAAACTCTG
AGGAAAAATACAGATACGAATAAAGGGGGGAATTTTTTTCTGTAAACAAT
CACCCTAAATTGTTGAGGTATTTCTTTTTTGTGACCTCTCAAACACCCCC
TTCTCACAGACCCGGTGGGATTTTATCAGCGAGTGGGGGTAAAAGTAACG
GACCAAAACTCGATAGGGATTGATATTCCCATGTTTTTATGGCTGAGGAC
TTGAATTTCAATGTTTTTTAGCTAGAATGGGGATGGAATAAATAGCAGAA
GATTTTACAGTGAGGATTTGTTTATTTGATTATTTTAAGCAGGGAAAAAA
TTGGAGTATAATTCTTCACTGGGACGATTTTGGCCAATTTTTCTAGTGGG
AAGGCTTCCCAGTTGGTCTGTGAGAAGGGAGTATTCTCACTAATATATTG
GCTGACAATATATTGGTGTAGTGTAGTGGAGCTCTTTGGATTAATCTTTG
GACTCGGGAAAGTCTGTTGAGTCTGGTGGGAATCATAGCTAATCAGAATT
TGCTCTAATATAATTCTAAACTTATGAATCAAAACAAATTATTTGATCTG
CACAATTTAATTAATCGATTTCCTCTATGAAAAAAGATAAGCTTTGATTA
ACATCTACATAAAAACCAGATAAAAATAATCAAAACAGAAATCAAAAACC
CCCAACCGATCCATCTGGATTTTAATCAAGAAATTGAAAACAAGAGAGGG
ATGTAAACTCAACCAATATTAGAAACAGTTCTCTCAGTTCATTCTAAAGG
AAAGAAAGAAAAATCAGTTTTCACAGGAACGATTAATCTTAAAGTAAAAT
TTCTGAAATGCTTTTATCCTAATACGAACGGAACGTTATTTCTGCAACAC
TTATCTGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGGTGACG
GTCAAAGGCCAGCTTTTGATCAAGTATGAGACCAAGATGTTTTTGATGAT
CCTGAATTGCAATGGCTGCATTATTGAAAATAATTTCTGGGGGTCAGCTG
GATTTAACCTCCGGGTAAAGTAGATTAACGTTTGAACAACGTTGTGTGCC
AGCTGGGTAGTGCTTTGAGTACAGAGGTAGAAAACGTTAAATCAAGGACC
TGGAACGTCAAAGATAAGAAGCTTATCCCATCAAAGCCTGTACTTTCTGT
AGCTCTTCTTCGCTGACTGAAAAGATAACGCGAAGTTCGGTTTGTTACGG
TTAGGCAACATTCCGTATTTCAGACATTTTTTCGTAAGTCTCTGAATGCC
TCTGTGGTAGAGCATAGCTTTTTTTAGCATTCAATCCAGCGCAACTAATG
TGACTTTATAATGATGAAGTAAGAAAGTTTGCAACCGCATTTGAGGGCGA
CCCGAAGACTTCCTTTTCCTTAGCTGTCTACCCGAAGGTAAGCGATGGCG
CCACTTCTTTCCCTGGATTGCTCCACTAACCCTTGATCCGTCTCTTTAGT
TGCTGAGCATCAAGCAGAGAGGCATCAGGTACCGTCTTTGGTATGACGTA
GCTTGGGCTCAAACTCACAAACTTGCGCAATATAGCACCGTAGGTAAAGC
ATCCAGCTTAGTAGCGCAAGGATGTTGGTTCAACTCTCAGCCGGGTCATA
CCAAAGATTCCCAAATAGTACAGAGAAAAGGGAGCCTTCGGATCGCCCTC
GACTGCGGTCGCAAACTTACTTACTATAATAATGATTAAGATGTGATAAA
ACACTGGGGATCCAACCAAAATAATTTCTTTTAACTTTTTTTACAGAGAA
TGCGTTTGGAGCAGATGTGCGCTCTCCTAAAAGGAGGTTGTAATGAAATC
TATAAATATTCAAGTAAACGAGGACGGGATTTGGGCGACGCAACAACCAG
ACGAGAAATTGAACAACAAGCGACGAGACGAAATGTTATTCCTCTAAGGT
ATAAACCACAAAAAAGAACACTGGAGAGTCTTTTACGGAAACGAGAGAAC
TTGAAATATGTCGTTGTGGAGTACTGAGAACCTTGAAAATAATGGCTTAG
TCAGTCAGCAGCTGAGACCGGTGGCAAGGAGTGGTTTATCAACTGGTACA
TAACGTTGTCTCAACGTTTATCTAATGTTCACAACATCCATGTAACGTTA
GATGAACGTTGAAACAACGTCGTGTGCCTGTTGGGGGGATTCAACCAATA
AGCCCTCTTAACCCATTCAAAAGAGAGTCAAATGAAAGCTATGGACGTTA
CGCAAAAAGTGATTCGAAAATAAAAGATCTTCATTTTTATTATTTTCTCA
ATATCATTTTTTAATTTATTTTGTTTATCATTGTTAATTTATATAAACCT
GGTGTTACAATAAGGTATCAAAAAGCAGAAATAGAAACGATAGGGGTTAT
TATAAAATTGTTTAATCTCAAACAACGACGTCTTAAAGCTGGTCACAGCT
TGATATCCAAGGTTTCTTTACAAAATGTCTTTTTCTTTCTCATTTAAGTT
ATATTACTTTTAGACTTATTAAGACTTATTATGGCAGAAATCAGAACAAC
TCCTTCTTTTCAATAATATACCGTGGAGACGGAAG

Coding sequence (CDS) from alignment at scaffold_276:18175..23509-

>TCONS_00056465 ID=TCONS_00056465|Name=TCONS_00056465|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_276:18175..23509- (Clytia hemisphaerica)
AGAATGCGTTTGGAGCAGATGTGCGCTCTCCTAAAAGGAGGTTGTAATGA
AATCTATAAATATTCAAGTAAACGAGGACGGGATTTGGGCGACGCAACAA
CCAGACGAGAAATTGAACAACAAGCGACGAGACGAAATGTTATTCCTCTA
AGGTATAAACCACAAAAAAGAACACTGGAGAGTCTTTTACGGAAACGAGA
GAACTTGAAATATGTCGTTGTGGAGTACTGAATGAAACTGATACAGAATA
ATTATTTGACGAAAAGAAATATTGAATTTCTTTTCATTGCATTTATTTTG
GTCAATGCACAAATTTCAACAGTAGACACTTTGACAGCTCCGGCAATCCG
AATGCTGGGTAGAAGAATCACAGCGAGAATGCGTTTGGAGCAGATGTGCG
CTCTCCTAAAAGGAGGTTGTAATGAAATCTATAAATATTCAAGTAAACGA
GGACGGGATTTGGGCGACGCAACAACCAGACGAGAAATTGAACAACAAGC
GACGAGACGAAATGTTATTCCTCTAAGGTATAAACCACAAAAAAGAACAC
TGGAGAGTCTTTTACGGAAACGAGAGAACTTGAAATATGTCGTTGTGGAG
TACTGAATGAAACTGATACAGAATAATTATTTGACGAAAAGAAATATTGA
ATTTCTTTTCATTGCATTTATTTTGGTCAATGCACAAATTTCAACAGTAG
ACACTTTGACAGCTCCGGCAATCCGAATGCTGGGTAGAAGAATCACAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035579XLOC_035579Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056465-proteinTCONS_00056465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056465-exon-scaffold_276-1575043694:23163..23509TCONS_00056465-exon-scaffold_276-1575043694:23163..23509Clytia hemisphaericaexon
TCONS_00056465-exon-scaffold_276-1575043694:18175..18963TCONS_00056465-exon-scaffold_276-1575043694:18175..18963Clytia hemisphaericaexon
TCONS_00056465-exon-scaffold_276-1510915933:23163..23509TCONS_00056465-exon-scaffold_276-1510915933:23163..23509Clytia hemisphaericaexon
TCONS_00056465-exon-scaffold_276-1510915933:18175..18963TCONS_00056465-exon-scaffold_276-1510915933:18175..18963Clytia hemisphaericaexon
TCONS_00056465-exon-scaffold_276-1491911889:23163..23509TCONS_00056465-exon-scaffold_276-1491911889:23163..23509Clytia hemisphaericaexon
TCONS_00056465-exon-scaffold_276-1491911889:18175..18963TCONS_00056465-exon-scaffold_276-1491911889:18175..18963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:18175..23509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.267901	0.149283	0.0433431	0.127184	0	0.040784	4.82167	6.27073	39.6644	44.1771	9.53846	40.4998	4.66612	3.28825	3.28419	2.13278	7.52308	10.1556	17.8986	23.2433	19.2786	18.4602	7.90209	8.73086	6.36903	7.59116	0.629735	1.02021	2.43928	2.14768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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