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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052999 ID=TCONS_00052999|Name=TCONS_00052999|organism=Clytia hemisphaerica|type=transcript|length=2166bp
tttttttatcaaaacaaagaaaaagaaaagaagatttATTCATGcgtgaa
aatttcgaaaaaaagttcgaaaaattACATCCACGGTTTCACTTCCTTAA
CTATTTTCTCATACAATCCCTAGAAGAAATCAACAAGGCACTGCATCCAG
GCCTATAATTTAATTCAAATAACTGCGATCTGAAGGAATGACCTTTTTCA
ATATAATTTGGAACAGTTTTTGCACTTTAATAGATTTATTTATCTTTTGG
CAAGAGCAAGTTTTGGTATACAAGAAATAAACCAATAATCCATAACACGA
CTAGANATAGCCAGAGCAAGTTTTGGTATACAAGAAAGAAACCAATAATC
CATAACACGACTAGAGAACGTTAAACTATTCAAATAGGTTATActacgct
ttttttataagaatatactttaaaagaaagtcttctgtttttaaatttat
aattttcgATGATTTTGAGACTATGACtggtaaaatctaaaaattaacct
taagaatatgttaagaatattatATGATGATTTCGaccaaaagttaaaaa
tatccatgatgaaatggatttacaccattcttataagaaaaaagcgtgta
ttctttGGTAGTTGGAGATCTCTAGAGGGTCCACAGAAATATCAATGTTT
CGATACCAATTACCAATCAAATAAAAGCCTTAGTTATCTAGAATCAGGCA
AAAGACTTGAGCAAATCAGCCAGGTTTTGAAGACTGTAGAATCAGTCCTA
CTCACTGTAGATTGAGTAAAGTCAGTTGAACTATATTCTAATCATGTTTC
ATTGTCGAATTCTACAACACTGCTTCtttcaattgaaaaaaagtcgTCAC
CAACTAAGGAAAATCCAAATCTTCTCGAAAAAATAAATCGCTTTACGCTA
TCCAGCACGGGCATACCATAAATGGGACAAAAGTCCATCCAGACAGTTGA
ACTTATGAAGTAAAAAAGCTCTCTTAAAGCAGAAAGCAGAGTATAGGTTC
CATTCAGAATATAATTTCACATAACTTTTATTGCCATTTTCTTCAAGTAC
AAGCAAGTATCCGAGTCTACCGAAAACGTTTTGATACGTTCACCCAACGT
CCGTAATATGTAACCAACGAAGCATGAGCATCGAAACATCATTTGAATTC
ACTTCGGGGAAACAATTATCCCAAGTAACAAAGGATCGTACCGAGCGTTA
CACCAGCAATAATTCTTTGATTGAGTAACGGTTAGAAAATTGGAATGAGA
TTTTATTCAGTATAAAACCATTATCAATATAATAGTGTCGAATATACGTC
CAAATCTTCGAAAGCGCTATTTTTACGGCAGGGTAACAATAACTTGACTA
CGAAAAAGGTTTTCTTCGACCAGAATCAATCAGCTGACAAAACCAACACC
CTCTAGCANCGTCCAAATCTTCGTAAGCGCTATTTTTACGGCAGGGTAAC
AATAACTTGACTACGAAAAAGGTTTTCTTCGACCAGAATCAATCAGCTGA
CAAAACCAACACCCTCTAGCAAGTTGTAGACGGACTTTACAGCAAATAGT
TAGTACTTACTTTTACACTAGTGACAATTCGTTGCTCGCGAATATCAACT
CCGAATAATGTTTAAATTATctaagagaaaaatttaatcACTTCACTTAA
CCAATTATCCTATACGAGACGTCACAGCTTATTTCTACGCTGTAACGGAA
TGAAAAATTTCGGCTTTTGGTGAGGTACTCGCTATTAACCAATCAACCAA
TTTGGAAACACTTCTTTTACGGTAGATGTATGGTGCTTACTGTGACACCG
GCTCTACTCCGCCAATTGACCGACTACGGATCATGATTTAATCCAATGGG
AACCAATCACCATTCAACCAAGTTATAGACCGATTCAGCAAAATCCAGTT
AGGTGCTATCTTTAAGCAAACCTCGAGCAAGCtgcctgttcctaactgac
ataaATTTCACCTACGAAACCAAAAACTATGCACAGGTccaaacgggaaa
tatttgaaCACTTTGAGCTATCAAGGTGTTACTTGATCATCTTGTACATA
GCATCCACCGTTTTTTTGGGAcaggctggagtttttacaagctcttattt
gatttggttggtcgttaagatgtaataaaagaatctcattactttttcta
aagaacgcgtcatctc Run BLAST on NCBI transcript from alignment at scaffold_222:500244..502409 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052999 ID=TCONS_00052999|Name=TCONS_00052999|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at scaffold_222:500244..502409 (Clytia hemisphaerica)
gagatgacgcgttctttagaaaaagtaatgagattcttttattacatctt
aacgaccaaccaaatcaaataagagcttgtaaaaactccagcctgTCCCA
AAAAAACGGTGGATGCTATGTACAAGATGATCAAGTAACACCTTGATAGC
TCAAAGTGttcaaatatttcccgtttggACCTGTGCATAGTTTTTGGTTT
CGTAGGTGAAATttatgtcagttaggaacaggcaGCTTGCTCGAGGTTTG
CTTAAAGATAGCACCTAACTGGATTTTGCTGAATCGGTCTATAACTTGGT
TGAATGGTGATTGGTTCCCATTGGATTAAATCATGATCCGTAGTCGGTCA
ATTGGCGGAGTAGAGCCGGTGTCACAGTAAGCACCATACATCTACCGTAA
AAGAAGTGTTTCCAAATTGGTTGATTGGTTAATAGCGAGTACCTCACCAA
AAGCCGAAATTTTTCATTCCGTTACAGCGTAGAAATAAGCTGTGACGTCT
CGTATAGGATAATTGGTTAAGTGAAGTgattaaatttttctcttagATAA
TTTAAACATTATTCGGAGTTGATATTCGCGAGCAACGAATTGTCACTAGT
GTAAAAGTAAGTACTAACTATTTGCTGTAAAGTCCGTCTACAACTTGCTA
GAGGGTGTTGGTTTTGTCAGCTGATTGATTCTGGTCGAAGAAAACCTTTT
TCGTAGTCAAGTTATTGTTACCCTGCCGTAAAAATAGCGCTTACGAAGAT
TTGGACGNTGCTAGAGGGTGTTGGTTTTGTCAGCTGATTGATTCTGGTCG
AAGAAAACCTTTTTCGTAGTCAAGTTATTGTTACCCTGCCGTAAAAATAG
CGCTTTCGAAGATTTGGACGTATATTCGACACTATTATATTGATAATGGT
TTTATACTGAATAAAATCTCATTCCAATTTTCTAACCGTTACTCAATCAA
AGAATTATTGCTGGTGTAACGCTCGGTACGATCCTTTGTTACTTGGGATA
ATTGTTTCCCCGAAGTGAATTCAAATGATGTTTCGATGCTCATGCTTCGT
TGGTTACATATTACGGACGTTGGGTGAACGTATCAAAACGTTTTCGGTAG
ACTCGGATACTTGCTTGTACTTGAAGAAAATGGCAATAAAAGTTATGTGA
AATTATATTCTGAATGGAACCTATACTCTGCTTTCTGCTTTAAGAGAGCT
TTTTTACTTCATAAGTTCAACTGTCTGGATGGACTTTTGTCCCATTTATG
GTATGCCCGTGCTGGATAGCGTAAAGCGATTTATTTTTTCGAGAAGATTT
GGATTTTCCTTAGTTGGTGAcgactttttttcaattgaaaGAAGCAGTGT
TGTAGAATTCGACAATGAAACATGATTAGAATATAGTTCAACTGACTTTA
CTCAATCTACAGTGAGTAGGACTGATTCTACAGTCTTCAAAACCTGGCTG
ATTTGCTCAAGTCTTTTGCCTGATTCTAGATAACTAAGGCTTTTATTTGA
TTGGTAATTGGTATCGAAACATTGATATTTCTGTGGACCCTCTAGAGATC
TCCAACTACCaaagaatacacgcttttttcttataagaatggtgtaaatc
catttcatcatggatatttttaacttttggtCGAAATCATCATataatat
tcttaacatattcttaaggttaatttttagattttaccaGTCATAGTCTC
AAAATCATcgaaaattataaatttaaaaacagaagactttcttttaaagt
atattcttataaaaaaagcgtagTATAACCTATTTGAATAGTTTAACGTT
CTCTAGTCGTGTTATGGATTATTGGTTTCTTTCTTGTATACCAAAACTTG
CTCTGGCTATNTCTAGTCGTGTTATGGATTATTGGTTTATTTCTTGTATA
CCAAAACTTGCTCTTGCCAAAAGATAAATAAATCTATTAAAGTGCAAAAA
CTGTTCCAAATTATATTGAAAAAGGTCATTCCTTCAGATCGCAGTTATTT
GAATTAAATTATAGGCCTGGATGCAGTGCCTTGTTGATTTCTTCTAGGGA
TTGTATGAGAAAATAGTTAAGGAAGTGAAACCGTGGATGTaatttttcga
actttttttcgaaattttcacgCATGAATaaatcttcttttctttttctt
tgttttgataaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052999-exon-scaffold_222-1491911889:500244..502409 | TCONS_00052999-exon-scaffold_222-1491911889:500244..502409 | Clytia hemisphaerica | exon |
| TCONS_00052999-exon-scaffold_222-1510915933:500244..502409 | TCONS_00052999-exon-scaffold_222-1510915933:500244..502409 | Clytia hemisphaerica | exon |
| TCONS_00052999-exon-scaffold_222-1575043694:500244..502409 | TCONS_00052999-exon-scaffold_222-1575043694:500244..502409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:500244..502409 . |
Blast
The following BLAST results are available for this feature:
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