TCONS_00053000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053000
Unique NameTCONS_00053000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053000 ID=TCONS_00053000|Name=TCONS_00053000|organism=Clytia hemisphaerica|type=transcript|length=550bp
GTGCTGTTTGTAGTACCAGCCATAACGTTTTTCGCGTAGCTGTATGAagg
taaaaatgggaaagaatgAGACAGCGTATTCAGGAAAATTCATCATGGAT
GGGTCTACTCTCAAGTACTTTAAACGGTGCTGTTTTTAGTACCAGCCATA
ACGATTTTCGCTTAGCTGTATGAaggtaaaaatgggaaagaaCGAGTCAG
TGGTATTTagtaaaattcatggatgtGGTCTACTTTCAAGTGCTTTAACC
AGTGCTGTTTTTAGTACCAGCCATAAATATTTTATAAGTTCAGCTGTATG
ATAGAGTGAAAAGTGAGTGACTATCCATGAAAATCTATAtatgttgtgta
taaaattccagGTCTTCCAGCTACTTTATCTGGTGCTCtaacaatttata
aaaataattcttatagtaatattttcctttttcttataaatagtaGCGTA
TTCTATTACCGATAATTTATGTgaactttttcttgatttaagaaaattaa
agaagatattttctcatcacaagaaaatatttatttataaagttAAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_222:541841..542390

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053000 ID=TCONS_00053000|Name=TCONS_00053000|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_222:541841..542390 (Clytia hemisphaerica)
TTACTTaactttataaataaatattttcttgtgatgagaaaatatcttct
ttaattttcttaaatcaagaaaaagttcACATAAATTATCGGTAATAGAA
TACGCtactatttataagaaaaaggaaaatattactataagaattatttt
tataaattgttaGAGCACCAGATAAAGTAGCTGGAAGACctggaatttta
tacacaacataTATAGATTTTCATGGATAGTCACTCACTTTTCACTCTAT
CATACAGCTGAACTTATAAAATATTTATGGCTGGTACTAAAAACAGCACT
GGTTAAAGCACTTGAAAGTAGACCacatccatgaattttactAAATACCA
CTGACTCGttctttcccatttttacctTCATACAGCTAAGCGAAAATCGT
TATGGCTGGTACTAAAAACAGCACCGTTTAAAGTACTTGAGAGTAGACCC
ATCCATGATGAATTTTCCTGAATACGCTGTCTcattctttcccattttta
cctTCATACAGCTACGCGAAAAACGTTATGGCTGGTACTACAAACAGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033473XLOC_033473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053000-exon-scaffold_222-1491911889:541841..542390TCONS_00053000-exon-scaffold_222-1491911889:541841..542390Clytia hemisphaericaexon
TCONS_00053000-exon-scaffold_222-1510915933:541841..542390TCONS_00053000-exon-scaffold_222-1510915933:541841..542390Clytia hemisphaericaexon
TCONS_00053000-exon-scaffold_222-1575043694:541841..542390TCONS_00053000-exon-scaffold_222-1575043694:541841..542390Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:541841..542390 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.210714	0.317756	0	0.11087	0.401281	0.595444	0.900465	0.491914	0.57568	0.799804	1.66702	2.04614	1.89322	0.875099	0.453012	1.06765	1.53601	0.971077	1.83764	2.15322	0.576485	0.451363	1.04454	2.43715	0.331611	0	0	0.182845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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