TCONS_00053016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053016
Unique NameTCONS_00053016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053016 ID=TCONS_00053016|Name=TCONS_00053016|organism=Clytia hemisphaerica|type=transcript|length=266bp
ACAAAAGACAAGTAAAACTGAACTTATTACTTTTACCAAACATGGAAATG
TCATTGTTGTAATCTGCTTTTGTTCTGAACCTTATAAATGTGTATTTCAA
TAACCACCTCCCTTTTTCATCGCGAGTTGAACATCATAGAGTGTCACTAT
CTTTGAAAGAAAAGTGAAAGTACCTTTTATAACTTTTTGTCGATTTAATC
GTAAAATTCGCTCAAAAAGCAACGAGTGAATCGGAGTTTGAACATTGaac
attgttttcaagaaag
Run BLAST on NCBI

transcript from alignment at scaffold_223:27701..27966

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053016 ID=TCONS_00053016|Name=TCONS_00053016|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at scaffold_223:27701..27966 (Clytia hemisphaerica)
ctttcttgaaaacaatgttCAATGTTCAAACTCCGATTCACTCGTTGCTT
TTTGAGCGAATTTTACGATTAAATCGACAAAAAGTTATAAAAGGTACTTT
CACTTTTCTTTCAAAGATAGTGACACTCTATGATGTTCAACTCGCGATGA
AAAAGGGAGGTGGTTATTGAAATACACATTTATAAGGTTCAGAACAAAAG
CAGATTACAACAATGACATTTCCATGTTTGGTAAAAGTAATAAGTTCAGT
TTTACTTGTCTTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033482XLOC_033482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053016-exon-scaffold_223-1491911889:27701..27966TCONS_00053016-exon-scaffold_223-1491911889:27701..27966Clytia hemisphaericaexon
TCONS_00053016-exon-scaffold_223-1510915933:27701..27966TCONS_00053016-exon-scaffold_223-1510915933:27701..27966Clytia hemisphaericaexon
TCONS_00053016-exon-scaffold_223-1575043694:27701..27966TCONS_00053016-exon-scaffold_223-1575043694:27701..27966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:27701..27966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.485141	0	0	0	0	0	0	0	0	0	0	0	0.399283	0.862628	2.04544	2.56091	0	0.923887	1.2764	5.37243	0	0	0	0.625824	0	0	8.23218	10.5427	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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