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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053005 ID=TCONS_00053005|Name=TCONS_00053005|organism=Clytia hemisphaerica|type=transcript|length=455bp
AAGAAGCTGGTTCTCTTACAAAAATCAACTAGATAATATTCAAGCTGGAG
TGTATTATTGGTTTCCTTATTGCGACTATCCTCAGCTGACTTTGTGTGGT
CGCCAGCAGAAAGTACCGAAAATATGCTATTAAAGgatcGCAAATATGTG
AAGGAGACCAAAGAAATCGCAATCAAGATATCGTTTTTTAACACCTCGAA
TAGCAATCATACTGGAAACGTTTGGAATGATTATTACAAAGATGCCAGAA
AGGAAGGACGGAAGAGaaagaacatcaaatttttgatttcattgccttta
atttatactgattgtagattttcatacccagaaaattatatagaaaagag
aattcaaagaaaattcaaatgtgtgtacggtctttctcataatagtgcaa
tgaataggaattattttggcaaagaaCGTCTTAGAGACGTGTTAAAACTA
atcta Run BLAST on NCBI transcript from alignment at scaffold_223:52407..53511- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053005 ID=TCONS_00053005|Name=TCONS_00053005|organism=Clytia hemisphaerica|type=transcript|length=1105bp|location=Sequence derived from alignment at scaffold_223:52407..53511- (Clytia hemisphaerica)
AAGAAGCTGGTTCTCTTACAAAAATCAACTAGATAATGTAAGTAGTTTAC
ATTAAACTGAAAATGCTTTTGATATTTAAGTTAATTCTTAGAGGNCTGTA
AAAGTTGGATGTTTCATGCACGAAGACTGGAAGAAGCTGGTTCTCTTACA
AAAATCAACTAGATAATGTAAGTAGTTTACATTAAAGTGAAAATTCTTTT
GATATTTAAGTTAATTCTTAGAGGCTTTATCGGTGTAGCTTATTTCAGGT
TTCAATTTCTGATGATATTTATTTTTGAGAGCAAACCCTGGAAAAATTAC
ATAATCTTCAGTAAACTTTATGTTAAACTTTTTATTTTAACTTCTTTTCC
CTCAGATTCAAGCTGGAGTGTATTATTGGTTTCCTTATTGCGACTATCCT
CAGCTGACTTTGTGTGGTCGCCAGCAGAAAGTACCGAAAATATGCTATTA
AAGGTAGGTGAAATGTAACAAGACTTTAATAATATCGTTCCAAAACTATG
CTAATTTCTTGTTAATAACCCCCTGCATCACTGAGTGAGCTTGGTACTTC
AAACTACTGAAATTTGACTTGGAAACACCCCTGTCTCAACGACAATAATT
TAGCAAAGTCCTTGGTAGAATACTTTCGTGAAACATAAAGTTTGGCCATG
AAATTTAAGAAGTTTTTTCTTTATCCTTCTGGAGTATTCTTTTTTCCCTG
GAAAGAAAAGGTAGTTTTCAACGTCACAACCGCAGCTAAAAAATCTTTAA
AAATCAAATTTACTATTTGTCTTTTATTTTTTCAGGATCGCAAATATGTG
AAGGAGACCAAAGAAATCGCAATCAAGATATCGTTTTTTAACACCTCGAA
TAGCAATCATACTGGAAACGTTTGGAATGATTATTACAAAGATGCCAGAA
AGGAAGGACGGAAGAGAAAGAACATCAAATTTTTGATTTCATTGCCTTTA
ATTTATACTGATTGTAGATTTTCATACCCAGAAAATTATATAGAAAAGAG
AATTCAAAGAAAATTCAAATGTGTGTACGGTCTTTCTCATAATAGTGCAA
TGAATAGGAATTATTTTGGCAAAGAACGTCTTAGAGACGTGTTAAAACTA
ATCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053005-exon-scaffold_223-1575043694:53475..53511 | TCONS_00053005-exon-scaffold_223-1575043694:53475..53511 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1575043694:53059..53156 | TCONS_00053005-exon-scaffold_223-1575043694:53059..53156 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1575043694:52407..52726 | TCONS_00053005-exon-scaffold_223-1575043694:52407..52726 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1510915933:53475..53511 | TCONS_00053005-exon-scaffold_223-1510915933:53475..53511 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1510915933:53059..53156 | TCONS_00053005-exon-scaffold_223-1510915933:53059..53156 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1510915933:52407..52726 | TCONS_00053005-exon-scaffold_223-1510915933:52407..52726 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1491911889:53475..53511 | TCONS_00053005-exon-scaffold_223-1491911889:53475..53511 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1491911889:53059..53156 | TCONS_00053005-exon-scaffold_223-1491911889:53059..53156 | Clytia hemisphaerica | exon |
| TCONS_00053005-exon-scaffold_223-1491911889:52407..52726 | TCONS_00053005-exon-scaffold_223-1491911889:52407..52726 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_223 | supercontig | scaffold_223:52407..53511 - |
Blast
The following BLAST results are available for this feature:
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