TCONS_00053037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053037
Unique NameTCONS_00053037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053037 ID=TCONS_00053037|Name=TCONS_00053037|organism=Clytia hemisphaerica|type=transcript|length=430bp
CAGCCATAACGATTTTCGCTTAGCTGTATGAaggtaaaaatgggaaagaa
CGAGTCAGTGGTATTTagtaaaattcatggatgtGGTCTACTTTCAAGTG
CTTTAACCAGTGCTGTTTTTAGTCCCAGCCATAACGATTTTCGCTTAGCT
GTATGAaggtaaaaatgggaaagaaCGAGTCAGTGGTATTTagtaaaatt
catggatgtGGTCTACTTTCAAGTGCTTTAACCAGTGCTGTTTTTAGTAC
CAGCCATAAATATTTTATAAGCTCAGCTGTATGATAGAGAAATCCATGAA
AATCTATTtatgttgtgtataaaattccagGTCTTCCAGCTACTTTATCT
GGTGCTCtaacaatttataaaaatatttcttatagtaatattttcctttt
tcttataaatagtaGCGTATTCTATTACCG
Run BLAST on NCBI

transcript from alignment at scaffold_224:404..833

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053037 ID=TCONS_00053037|Name=TCONS_00053037|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at scaffold_224:404..833 (Clytia hemisphaerica)
CGGTAATAGAATACGCtactatttataagaaaaaggaaaatattactata
agaaatatttttataaattgttaGAGCACCAGATAAAGTAGCTGGAAGAC
ctggaattttatacacaacataAATAGATTTTCATGGATTTCTCTATCAT
ACAGCTGAGCTTATAAAATATTTATGGCTGGTACTAAAAACAGCACTGGT
TAAAGCACTTGAAAGTAGACCacatccatgaattttactAAATACCACTG
ACTCGttctttcccatttttacctTCATACAGCTAAGCGAAAATCGTTAT
GGCTGGGACTAAAAACAGCACTGGTTAAAGCACTTGAAAGTAGACCacat
ccatgaattttactAAATACCACTGACTCGttctttcccatttttacctT
CATACAGCTAAGCGAAAATCGTTATGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033495XLOC_033495Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053037-exon-scaffold_224-1491911889:404..833TCONS_00053037-exon-scaffold_224-1491911889:404..833Clytia hemisphaericaexon
TCONS_00053037-exon-scaffold_224-1510915933:404..833TCONS_00053037-exon-scaffold_224-1510915933:404..833Clytia hemisphaericaexon
TCONS_00053037-exon-scaffold_224-1575043694:404..833TCONS_00053037-exon-scaffold_224-1575043694:404..833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:404..833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160533	0	1.13738	0.493266	0.649462	0.684285	0.825561	2.5592	1.71392	0.313534	1.39141	0.57883	1.69413	1.54452	1.50874	2.10036	0.853734	0.866845	0	0.455916	1.55996	2.35357	0.496754	0	0.501779	1.41068	1.1222	0.939682	0.356358	0.807089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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