TCONS_00053036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053036
Unique NameTCONS_00053036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053036 ID=TCONS_00053036|Name=TCONS_00053036|organism=Clytia hemisphaerica|type=transcript|length=2072bp
TAATGGGAAGGGTTGAATGAGAATTGAATACTAATTAGAAATCAAAAGAT
GAAAGCGAAACGTCATTTCATACTATTTTTCTCTGATTAGTATTTTGTCG
GTAACGTCATCAATCGCCTTAACTGACATTTCTTTACACTTGAATAACTT
CTGTTTCATTGATTAATTCATACCATTATTCAAAGATTAAATGGGAAAAA
ATAGCTGGATAATATTTGTTACAAAAGACCATTTTTCTTCGGACAGGTAC
TTATATATGTGTacctttgaaaaaaataagatgtcTTTAAGCCAAAGAAT
AGTGGATGACTTCCTCGAAGTACTTAAAAGAAATTACAGTAGTTGAAACC
ACATAAACGAAATTCAGAGGGAGAAGTTAGAAGACATCGCATCATTGCCG
TGTGGTTAGACGACTTGCCGTACACGTGCCATAAAAATAACATTGACATC
CTTgtcaaaaaaatacttttttacgAAATAGCCTCTATTCGTCATCAAGG
AGAGTAACCAAGCTGGAGATTATTGACttttaaacaaataaataaaaata
atagtGAAGAGCCGGTAGTATAAAGTTATTGTTTTATACAAGGCGACCGC
TGATTGGCTAATCATCTTTTTAAAAGACGTGATTTTGTAAAGCGCGTGAA
TCATTTACAGTAAGAACATTGACAGCGTCGAGTCGAACTTTTTCGAGAAA
TTAATTGATTTATCTGAAAGACAAGATATGGCTTCAATCCAAAATTCTTT
GATCATcTTGGTCTGTATTGCTGGGATTGTCTCAGGAGGCTCACCGCCAA
GCTCTTTCAACAAAAAGccgaattcaaaattcaaatcacTCAAAGGGATT
TGGCTGGACAACATCAGGAACAAAAACCCGACAAATGTGCCGCTCGAGCA
TCAAACAAGAAGTGACGCAATGCAATTGTATTCTATTCGATCCAAACAAA
TCGTCAAAGTTAAAGAAGTCAGCGAAAAAGCCTGGGAACAACCTAACTAT
GAGTTGACCATGACTCCAAAAAGTCGCAGCAGAAGAGATAATAAATTTGT
TACCGAGACTGTTTCGTACCAACGCTTAAAGATTCGATCGGCTGACAACC
AAAAATACCTTTGTGCAAGAACTAATGGAGAAATTGTCTTCAAGAACAAA
GCGGACAAGAAGAACAAGCCACGAAAGAGATGTCTGTTTCATTGGGAATT
CACCAAGCAAATGCATATCCAACTCTCTTTGGAAGCTGGTGATAAGAAGA
GATATTACTTGAGTGTGAAGGATAATCTCATCAAGCTacgagaaaaagaa
gaaacaacaGAAATCGAGCGATCGTTTATCTGGCTCCCAACAAAACCATT
AAAAGGACAAGGTACAAGACTTCCAATGTCAGGGAACGAGCGTCGAAGCA
GGACATTTGACTTTGATCTTGATGCTGTCTTTGGAAAAATGTTCCCTGAA
GAAATCCTTAGAGAAAAAGACCGACAAATCGAGCTTTTACTGGAAGAAGT
TAGAAACTTGAAGGGAAAAGCATCAGAATCTGATTGCGATAAACGAAAAT
GAGGATAAAGGAGATGAGTGTTTTGGTAGCGATACGGTATGTTGGGGTGG
AAGCAAAATGTTATCGGAGTGGAATACAATGTACTGACTGATTCGGTGTA
AACTGTTTGCAAAATCATATGACAAGAATAAACTTTtcagaaatataaaa
aaatgcatTATATACGAAATGACAAATATAAAAAGGAGCGTTTTCACTCC
TGCTTGaatgaatgtaaatttttttatttctttttatatttaataattta
ttactctttatgtatattataaaaatattagagaTGTAAATGATATATTT
TTAATAGGAAGAGATGGCGAATAGTCTAAATGgcgcagaaaaaaaacatt
aaaaaccagAAGAATTTTCACTGGATGAAAAGACATCAATAGAAAAATCA
ACGCTTTTtttgttgtatattttttttaatattgagaAGGTTTGATGTAA
CTATATACGATTCTGCGAAATTTCAAATACAAttataatttaaaataatt
AAGGTGTCTCCTCCAAACTATA
Run BLAST on NCBI

transcript from alignment at scaffold_224:47689..52715-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053036 ID=TCONS_00053036|Name=TCONS_00053036|organism=Clytia hemisphaerica|type=transcript|length=5027bp|location=Sequence derived from alignment at scaffold_224:47689..52715- (Clytia hemisphaerica)
TAATGGGAAGGGTTGAATGAGAATTGAATACTAATTAGAAATCAAAAGAT
GAAAGCGAAACGTCATTTCATACTATTTTTCTCTGATTAGTATTTTGTCG
GTAACGTCATCAATCGCCTTAACTGACATTTCTTTACACTTGAATAACTT
CTGTTTCATTGATTAATTCATACCATTATTCAAAGATTAAATGGGAAAAA
ATAGCTGGATAATATTTGTTACAAAAGACCATTTTTCTTCGGACAGGTAC
TTATATATGTGTACCTTTGAAAAAAATAAGATGTCTTTAAGCCAAAGAAT
AGTGGATGACTTCCTCGAAGTACTTAAAAGAAATTACAGTAGTTGAAACC
ACATAAACGAAATTCAGAGGGAGAAGTTAGAAGACATCGCATCATTGCCG
TGTGGTTAGACGACTTGCCGTACACGTGCCATAAAAATAACATTGACATC
CTTGTCAAAAAAATACTTTTTTACGAAATAGCCTCTATTCGTCATCAAGG
AGAGTAACCAAGCTGGAGATTATTGACTTTTAAACAAATAAATAAAAATA
ATAGTGAAGAGCCGGTAGTATAAAGTTATTGTTTTATACAAGGCGACCGC
TGATTGGCTAATCATCTTTTTAAAAGACGTGATTTTGTAAAGCGCGTGAA
TCATTTACAGTAAGAACATTGACAGCGTCGAGTCGAACTTTTTCGAGAAA
TTAATTGATTTATCTGAAAGACAAGATATGGCTTCAATCCAAAATTCTTT
GATCATGTGAGTAAATTTTCGTGATTTGATTTTGATTTTGTTGCCTTTTG
GTGAAGCGTTTTATACTTTTATAAATGTTTTATACAGTTTTCAAATGGAC
AAAATTGTCAAGATTACTTTCTAAGGAGTAGCAGCTTGGTGGTCATTTGT
TTGTTTCCTTTAATGACGACAAAAAAAGCACAAAAAATGCGTTGCAGCCT
ATACACAAGAGCGCCGATAGACAGGGCTTACGACTTTTTGCTTCTATTTT
CATTTCAATGTGGTCGAATTATTTGAAATTCACCGCGCTGTTAATTGATC
AGAACGGAATCTATGCGCCAATAGAATTTATGAGTAAACAACATTTTACT
TTGCTGATCGCTTTGCCAACCAATTAAGGCTAGAATTAATTGGATAAAAA
TAGATTTGCGGTATCCGTTCTTTTAAATGCCAGTCATGAGAAAATGGTAA
TCACATACAGCAAGGTCGTGGTGAGGAGTAGTCACACACTTAACAAAGTA
ACATGGAGTTTCTTTTCCTTTTTAGCTTGGTCTGTATTGCTGGGATTGTC
TCAGGAGGCTCACCGCCAAGCTCTTTCAACGTAAGTCAATGATTTCATCT
TCACTCATAATCAATATCCTGTTAGCGAGCGGGTAGAATATTCAAGAATT
GGATTAAAGAGAAGCAAGTTTGAGCAATTCCCGAGTGGTTTTAAAGCTAA
TTGGAATTATTATCGCCTTCATTCAAGATTTTTTCTTTTGAGTTTTGAGG
AGGCGGAGTTGACAAAAATGTTCGGAAGAAAATGTCTTTCAACAATTTGT
CAAGAATTTCGTGCTTTTTCTGACATCATGACATGTAAATTGGAAAGAAT
GCGAAGCGCTTTTGAATGCGTTATTTTTCCCACTTATATTTTGTGAATAT
AGGGGTTGGATTTAATTAAAGAAACTTTCTGATACCTTGTGACATTTTCA
ACACCATGTCATTTCTGTAAATAATATTTTTGTCGGCTCGTATTCTGCCA
TATAATCGCGTGTCATATTAGACGAAATTGTTCAGGCAATTTACTTTCCC
GAATTTAATTGATTTTCACACTTTTATGGATTCACAGAAAAAGCCGAATT
CAAAATTCAAATCACTCAAAGGGATTTGGCTGGACAACATCAGGAACAAA
AACCCGACAAATGTGCCGCTCGAGCATCAAACAAGAAGTGACGCAATGCA
ATTGTATTCTATTCGATCCAAACAAATCGTCAAAGTTAAAGAAGTCAGCG
AAAAAGCCTGGGAACAACCTAACTATGAGTTGACCATGACTCCAAAAAGT
CGCAGCAGAAGAGGTAATTATATTCTCGCGTGTTTTGGCAGCAGACCTCC
AAAATGTCCCTGCAACTTAACCAAAACAAAATTTTTCCTAAATTACTAAG
GAGCTATTAGGCAAGTTTAATGACCATAATTATCCCTCCCTCAAAGCATT
GTGTTTGTTATTTTGGAAAGTTTCTACTGGCGTAATAGGAAGTCGTTGAG
GTTTGACGTGTGCCATGATTACTCTATTCTTTGCTTGCTTGTGGAAGAAT
TTGAAAGAGAATTAAAACACAAAAGAAACAAAAGAAATTTCGTCGAAAGC
TTCCTTTCTTTAACTGCGTTGGATGAGCATCATTTTCATATGGTCCTTGA
CAATTCCTGACCTTTCTTTGGGTCCTTATGCACGGAAACTCATCAGTTAT
TCTTGTTTTGAAAAAAAAACTGTTCAAATGACGTTCGTTTCCTATGACAA
AGTCACACCTACATATTGAACATTTTAATTTTGTGCTCAATTTGTTTTGA
AATTCAACCAAATAAAAAAAATATTGAGCAAAACTATCAGTTTTTAAGAA
AACAGCGATGAAAACTTAAAATCTCAATTGACATATTGACTCGAAAAAAA
TATCTTAGTAGGTTGACGCACCATGTCACTTGTACAAAACACAGGAAATA
TGCAAAATTGGGAAAGGGGTCTCTTTTCCTTAGTATTGTTGTAATCCATT
TAGTTGACGAAACAATAGATCTTTTCCTTGCTTTTTCAATTAAGCGATGA
TTAATTCTGATTTAATAATGTCATATTTTCCATCACAGCTCGCCTATTGT
GCGGTCTATTCTATTTTTTTAGATATTTTCTTCAGAAAAAAGTTAAATTA
CTTTCCCAAGCGTAACATTCATTTAAGACGTGAAGTTTCCGTCTTATTGT
AACTATTAAAAAGAGAACAGAGATTTAAGAAGCACAGTATGGCAACCACA
CCTAAGCTCTTTACAGTCTTATTCTATTGTTACAAACACTTCAGGAAAAT
AAAATCGCAAAGTTTAAATCGTAAATTTAATTGCAACAATCACAATTAGA
ACTCATCCCTGTCTTTTCCTAACCTTGTTAAAGAGCGCGTGTCTAGACTT
GGTACCTTTTTACATTAATTTGACTAGATAATATCCTGAACAAGTATTGA
TTGAAATTTCCTTTTTCTCATCTTTTTACAGATAATAAATTTGTTACCGA
GACTGTTTCGTACCAACGCTTAAAGATTCGATCGGCTGACAACCAAAAAT
ACCTTTGTGCAAGAACTAATGGAGAAATTGTCTTCAAGGTAAGGACTTTG
AGTTTAGAAACACGCTTGTTTATTTACCATACTCATCATCATCATTAATT
AATCCATTCATTCACACATTCATTCATACATTCATTCATTTTAACATCCA
ATCGCATCGACATCGACTGTCTCCTTGGAACTCTGAAATCCATCTTTACC
TTTTCACTTCTTCTCATANGCACGCTTGTTTATTTATCATACTCATCATC
ATCATTAATTAATCCATTCATTCACACATTCATTCATACATTCATTTATT
CTAACATCCAATCGCATCGACATCGACTGTCTCCTTGGAACTCTGAAATC
CATCTTTACCTTTTCACTTCTTTTCATACTGGACCCTCTCTCAATCATTA
AATTATATTGACACTGAAACACTTTTTCTTACACCTCACTCCATGCTTCA
TTCAGTTAGTCAGAAAAGTCAGTATTCTACAAGTTAGCTATACACTATAC
TGTATTCTTTTGTACTTAAATGTTTGCCATGCACGTTACTCACTTTCCTG
CACGCTATTCACTTCGTAGGACACAGCAGATAAGGAAGAGAAAGTAGCAT
CAGTACCAGATGGCCTTCGAGAATATTCATCGGTATGTAGCTCTCTAGCC
AAAATCTATCGCTTTCAATTATCCTGTCTTTTTCGTCAAAATTTTTATAA
TCGAACCTTGTGAGCTACTTCAATGAATAGTCTCTGGCACCGTTTCAACT
TTATAGTCATACGGCCAGTCATTTTCAAACTTTCGTTTCCTATCTTTAGA
ACAAAGCGGACAAGAAGAACAAGCCACGAAAGAGATGTCTGTTTCATTGG
GAATTCACCAAGCAAATGCATATCCAACTCTCTTTGGAAGCTGGTGATAA
GAAGAGATATTACTTGAGTGTGAAGGATAATCTCATCAAGCTACGAGAAA
AAGAAGAAACAACAGAAATCGAGCGATCGTTTATCTGGCTCCCAACAAAA
CCATTAAAAGGACAAGGTACAAGACTTCCAATGTCAGGGAACGAGCGTCG
AAGCAGGACATTTGACTTTGATCTTGATGCTGTCTTTGGAAAAATGTTCC
CTGAAGAAATCCTTAGAGAAAAAGACCGACAAATCGAGCTTTTACTGGAA
GAAGTTAGAAACTTGAAGGGAAAAGCATCAGAATCTGATTGCGATAAACG
AAAATGAGGATAAAGGAGATGAGTGTTTTGGTAGCGATACGGTATGTTGG
GGTGGAAGCAAAATGTTATCGGAGTGGAATACAATGTACTGACTGATTCG
GTGTAAACTGTTTGCAAAATCATATGACAAGAATAAACTTTTCAGAAATA
TAAAAAAATGCATTATATACGAAATGACAAATATAAAAAGGAGCGTTTTC
ACTCCTGCTTGAATGAATGTAAATTTTTTTATTTCTTTTTATATTTAATA
ATTTATTACTCTTTATGTATATTATAAAAATATTAGAGATGTAAATGATA
TATTTTTAATAGGAAGAGATGGCGAATAGTCTAAATGGCGCAGAAAAAAA
ACATTAAAAACCAGAAGAATTTTCACTGGATGAAAAGACATCAATAGAAA
AATCAACGCTTTTTTTGTTGTATATTTTTTTTAATATTGAGAAGGTTTGA
TGTAACTATATACGATTCTGCGAAATTTCAAATACAATTATAATTTAAAA
TAATTAAGGTGTCTCCTCCAAACTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033494XLOC_033494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053036-exon-scaffold_224-1575043694:51960..52715TCONS_00053036-exon-scaffold_224-1575043694:51960..52715Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1575043694:51386..51440TCONS_00053036-exon-scaffold_224-1575043694:51386..51440Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1575043694:50653..50878TCONS_00053036-exon-scaffold_224-1575043694:50653..50878Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1575043694:49378..49484TCONS_00053036-exon-scaffold_224-1575043694:49378..49484Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1575043694:47689..48616TCONS_00053036-exon-scaffold_224-1575043694:47689..48616Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1510915933:51960..52715TCONS_00053036-exon-scaffold_224-1510915933:51960..52715Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1510915933:51386..51440TCONS_00053036-exon-scaffold_224-1510915933:51386..51440Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1510915933:50653..50878TCONS_00053036-exon-scaffold_224-1510915933:50653..50878Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1510915933:49378..49484TCONS_00053036-exon-scaffold_224-1510915933:49378..49484Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1510915933:47689..48616TCONS_00053036-exon-scaffold_224-1510915933:47689..48616Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1491911889:51960..52715TCONS_00053036-exon-scaffold_224-1491911889:51960..52715Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1491911889:51386..51440TCONS_00053036-exon-scaffold_224-1491911889:51386..51440Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1491911889:50653..50878TCONS_00053036-exon-scaffold_224-1491911889:50653..50878Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1491911889:49378..49484TCONS_00053036-exon-scaffold_224-1491911889:49378..49484Clytia hemisphaericaexon
TCONS_00053036-exon-scaffold_224-1491911889:47689..48616TCONS_00053036-exon-scaffold_224-1491911889:47689..48616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:47689..52715 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0421898	26.6391	15.8293	14.2424	18.9143	9.99594	15.0851	8.03061	8.79869	10.3177	8.39872	3.27507	2.06537	13.4293	13.1474	8.10516	21.7241	10.8102	8.89972	2.54398	4.60992	4.7962	7.60265	8.49411	4.61384	0.671724	0.910213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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