TCONS_00053033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053033
Unique NameTCONS_00053033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053033 ID=TCONS_00053033|Name=TCONS_00053033|organism=Clytia hemisphaerica|type=transcript|length=1128bp
TTCGATGGAAGTGTCAAGAAATTGAACACGTTGTACGTGAGCAACCCTTG
TCACAATAAAGAATGTTTAAAAGAGACTTCTCAACAATACAACCCGCTGG
ACGATGAAATGTTTGTTCAAAGAAGGCTGGCTGGACCATGTCCTTTCAAC
TTGAAACAAGTCTCTACAAATGGCGGTGAACAATGGACTTGTGTTTGTGT
TGTACCACCCAGAGATTGACCACATCACCGCATCTTCTCCCTTCAGTGAT
CCTGCACAGGAAAGGACGTTTCGCAAAATGAACAATCCCATTGTTTTCTT
CATACTGACAGATGACGgctttttgaaaatagtttccATTCAAAGGGACA
GTGAGAAAGATAGTGAAGTCCTGCAGCCGATAGAGAGTGACCCGGAGGAA
TGGCTGAAAGTCAAAGGTGATGCTGAAATGGCGGACTCCAATTACTGTCA
AGGTTTTTACCATAGTGGTAAGATACACTTAGTAAGCACCATTTACTGTT
TGGCATACCGAAGACACATCGATAAAAACCATCCGCTTTATGACTTCTTC
TTGTACCATTGTGAGGGTACTGTACCGCACATTTCTTTGGTTTATCACAC
TTTGCTGACGTCAAATGAACGATCAGATGCGTCATTAGGTATGGGTCATC
AAGGATTTTTGCAATTAGGAACCAAAGCGTTTAACAGTAGAATGTATGGT
GAACTTGATCTCCCATTCTTTTTAAAGCGAAAAGGCTTGGATAACAAAAG
AATCAAGTATTATCCCTTTCGAGATGATGCTGAGGTACTTTGGGAGGAGC
TGGCAGGGTTTACTAACGACGTCATCAGCGAAATCTACAAAACTGATGAC
GAGGTTTCCCAAGACCCTTCCCTACAATCTTTCGCAACAGAATTGTCATC
TAAAGATGCCGGTAATATGGCTGGATTTCCGACATATTTTGAAAGCAAAC
AATCAATACGATTGTTTCTTTTGAGATTTCTTTGGTTCAATGTCATCCAT
ACAAGTTTGAACTATCCATTAAATATGCACAGTCAAACGTTCAGTCCTAC
AAAGTCCTATCAAAACATACAAAGAGAGCCATTCTCAACTTATCTTCAAA
CGTTACCTGATTTGTACACAGCCGTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_224:94695..100121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053033 ID=TCONS_00053033|Name=TCONS_00053033|organism=Clytia hemisphaerica|type=transcript|length=5427bp|location=Sequence derived from alignment at scaffold_224:94695..100121+ (Clytia hemisphaerica)
TTCGATGGAAGTGTCAAGGTAAACTACTGTTCTTTGCATTCACCCAGCTT
TCCAATTTACACTAGTTATACATGGTTTACCTTCTTAAAAGCGTAAACAa
ttctactttaatgggataaattttcgcggggattaattttcgcggatttc
gcggatttgggtgtcatccgcgaaaataagtcccattggaaatttgaaaa
aggcccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaatagtgccatccgcgaaa
attaatccccgcgaaatcttaaaatttcgcggatgagctcaaccgcgaaa
tttaatccccgcgaaaatttatcccattaatcTTGCTTATCTTTGCTTTG
GTAGAAATTGAACACGTTGTACGTGAGCAACCCTTGTCACAATAAAGAAT
GTTTAAAAGAGACTTCTCAACAATACAACCCGCTGGACGATGAAATGTTT
GTTCAAAGAAGGCTGGCTGGACCATGTCCTTTCAACTTGAAACAAGTCTC
TACAAATGGTCAgttcttattttctcattctcacgGTCGAATCATTATGG
AGAAAACTCAGTAGAAAAATTACTTACAAACAAGGTtctttaattcgatt
ttcaagggcaCCTTTATCGAATACAGGAGCGTGTCGAATAGTAGGGAGTT
TCTCTAATCTATTAAAACGAGGAAATTTTAGACTTTAGATTGATTCGGAG
ATAATTTGGACAAATATTGAAGGTCTATCTATCACCAGCCGGGGAAAGAG
AGATTGCAATTTATTTGTGATTCACTGTATTTCTCAACTAAATCTACTAC
TAGATTATTAGAATTCGATAATTTTTTCCAGGTCCGACTGGGATTCTTCT
CTCTACCCTAAAAAGAAAGATGAATTTGGATTTCGATTATGACCAAGCAT
TGACTCGAGCGCTTGGTAAAAGAACCACTCTGGCAAAGGTAAATAAATAG
AAGTGATAAAAATTGTCCATAGGTTTTATCTGGTAGAATTGTAAAACTAC
CTGAAAGAAAATGGTATTGTGAAGAAAGTTAAAAGGAAACTTGGAACATG
TTACCAATCACCATAAAAAATTAgttcttgccaaaattagttccattAAT
CACAAACAAATTACAATCTCACTTTTTCCGGCTGGTGATAGGTATAGTAA
ATTCATTTTGGTCAGGTTAGGTTATCTGGTTCCGATAAATGACCTCTAAA
AGTGGTGGATTTAGACGAAAACACAGACCGTTCTGGTTATTTTAAGGCAA
TCCTGATCAGGGGCTTTGCAGGCTACCTCATATCTTCCTccgttttgagc
gtaaaactcctacccTTTGTGGATATTATTATTGATGTCGGCTAATGCAC
TCCGTTTAGGCGGTGAACAATGGACTTGTGTTTGTGTTGTACCACCCAGA
GATTGACCACATCACCGCATCTTCTCCCTTCAGTGATCCTGCACAGGAAA
GGACGTTTCGCAAAATGAACAATCCCATTGTTTTCTTCATACTGACAGAT
GACGgctttttgaaaatagtttccATTCAAAGGGACAGTGAGAAAGGTAT
CTTGATTCGTTTTAACCATGGAGGtatataaagtaaaacaggAGATGTAT
GTTATTATAACCAaactcgccctacgattaaaaaagttacgaggtTTGCA
TATATcccatatatcgtgcatttttaatgtgctcttttaaggccggtctc
cactttcgcgcgacatgagcgaaaactttttgacgtttttgtaaggtcat
cggtcgattgaaaaatgaagcaattccattggtcNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgcgacatgagcgaaaactttttga
cgtttttgtaaggtcattggtcgattgaaaaatgaagcaattccattggt
cgaaattgacgtaatggatgaaaaaattagaacttccttcaacttttttt
ttgttcgcgcgaaacttttttatgacgtaatcttttctttaggcaaaaaa
ggttaagaaaaaaactgtcgcccatttcgcgcgaaaacTTTATCCGTTGG
TTAAATCTTTTTGGGTCATTTCAGTGTTAAAATTaaatgagacgagattc
attgtttctgacatcgaTGTAATAAagtatttttactaaaaatagcctac
aaacttggcaatcctttaCAACAAATGGAGAGAATAAAGTTTTCTTCAAA
GTAAACCCTGTTGCTTTATACTTTCCTCTAAATTTTTCCAGCGccttttt
gtctaaaaattgagtctgaaattgcgtttgcttataaagaactttccATT
TTCTGGCttaagaaagtatttttttcaaaacaaaatttcacgGTTAACAA
AATGGAACAGAAACTTTTTTCGTTgtgagcttagaatttcttttgataca
tttcatAAGAGAAATCAAAAGACCAATTACTGAcaaattcaactcctgtt
tttctttatacttcGATGTTTGTTATACTTTCTTCTTCCTTCCCAATAAT
TTCCCAACTTATTTCTTGCTTCAGTTTTTATTCTTCTGACACCTGTACTC
ATCAATTGTCCCGGTATCCTAATTATACTAATTTGAGGTTACAAATTATA
CCAGCATCGACCCTTACTCTTAGGTTACCAAATAAATCAACACccttttt
tcttatctttttgattacctttttaatttttactgGTTTTAACTAGATAG
TGAAGTCCTGCAGCCGATAGAGAGTGACCCGGAGGAATGGCTGAAAGTCA
AAGGTGATGCTGAAATGGCGGACTCCAATTACTGTCAAGGTTTTTACCAT
AGTGGTAAGATACACTTAGTAAGCACCATTTACTGTTTGGCATACCGAAG
ACACATCGATAAAAACCATCCGCTTTATGACTTCTTCTTGTACCATTGTG
AGGGTACTGTACCGCACATTTCTTTGGTTTATCACACTTTGCTGACGTCA
AATGAACGATCAGATGCGTCATTAGGTATGGGTCATCAAGGATTTTTGCA
ATTAGGAACCAAAGCGTTTAACAGTAGAATGTATGGTGAACTTGATCTCC
CATTCTTTTTAAAGGTAATTATTTCTTTCGATTCAAATGATTTGAATCAG
ATGATGATGTTTTATGCTTTTTTCGATGATTAAGCTGACTGCAGACCTTC
TTCTAATTTTACTTTCACCCTTTCTACTTNATTTTTTCGATGACTAAGCT
GACTGCAGACCTTCTTCTAATTTTACTTTCACCCTTTCTACTTTCGTATt
ggatggaaaaaataaaataaatcataTCAGACGCAAGCAACCTTTATTAT
CTTTGTCTTTTTTCAGCGAAAAGGCTTGGATAACAAAAGAATCAAGTATT
ATCCCTTTCGAGATGATGCTGAGGTACTTTGGGAGGAGCTGGCAGGGTTT
ACTAACGACGTCATCAGCGAGTAAGTTTTTGTTTGATACCTTTACAATTT
AAATGTCACATTTTCGTTTGGCATAGTGCTGAAATCTACTTTTCGGTGTT
AGAACATGTCGTAAAAGCAGTGTTGAAAGTAGGTACAGTAGAAATCATTG
GATAGTTTacttttcatttaattttctgGCTTACTCTTCTGTAcagaatt
cagtcaaatcagCTACAGTATATCAACAGTTAAGGTATTAACGAGGTTAA
TGACTATAGTGAACCACAATCGAGCTATTAAAAAGGAAAGTGGCTTCATT
GGTTTTATAGAATCTACAAAACTGATGACGAGGTTTCCCAAGACCCTTCC
CTACAATCTTTCGCAACAGAATTGTCATCTAAAGATGCCGGTAATGTAAG
TGCgccatttttcagtttttttctcgTACGTTTAGCCGTGATTTTAAAGA
TTTGTTccattttcttgtatttttaaaggagaaTATCATTCTTTTATCAT
CAACCTGAAAAATTTAAGCCATCTAATTGACTAGAGAAGCAATATTTCCA
GTATTTCATATTTATACCTAAAACTACGAGACCTCTTCAACATGAGGGGT
GTGTAAGCGAGAGGTCACAATCTGTAGAATTGTTTCTCTAATATAGTTGA
TCTAATCGTATAAAATAGAATATGATGAAGTGTTTTTGCTCAACAATATG
CGTTTCTGTAAGGGGTCCCTTAGTGCAAAGTGAGCAGAAGTAAATGCATA
TTTTCTCACTCTGAAAACTATTTGACGACGCATTTCTATCGAAAGATTtc
caaacaaaaaatatttttcagatttcGTTTTTTAAGACGGAAACAAGTAT
gtctcaaaaattataaaaaatttaaaaaatttacttaAGGTAAAACAATC
TTCTTTAATTTTCAGATGGCTGGATTTCCGACATATTTTGAAAGCAAACA
ATCAATACGATTGTTTCTTTTGAGATTTCTTTGGTTCAATGTCATCCATA
CAAGTTTGAACTATCCATTAAATATGCACAGTCAAACGTTCAGTCCTACA
AAGTCCTATCAAAACATACAAAGAGAGCCATTCTCAACTTATCTTCAAAC
GTTACCTGATTTGTACACAGCCGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033492XLOC_033492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053033-exon-scaffold_224-1491911889:94695..94712TCONS_00053033-exon-scaffold_224-1491911889:94695..94712Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:94695..94712TCONS_00053033-exon-scaffold_224-1510915933:94695..94712Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:94695..94712TCONS_00053033-exon-scaffold_224-1575043694:94695..94712Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:95699..95852TCONS_00053033-exon-scaffold_224-1491911889:95699..95852Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:95699..95852TCONS_00053033-exon-scaffold_224-1510915933:95699..95852Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:95699..95852TCONS_00053033-exon-scaffold_224-1575043694:95699..95852Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:96704..96890TCONS_00053033-exon-scaffold_224-1491911889:96704..96890Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:96704..96890TCONS_00053033-exon-scaffold_224-1510915933:96704..96890Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:96704..96890TCONS_00053033-exon-scaffold_224-1575043694:96704..96890Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:98291..98658TCONS_00053033-exon-scaffold_224-1491911889:98291..98658Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:98291..98658TCONS_00053033-exon-scaffold_224-1510915933:98291..98658Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:98291..98658TCONS_00053033-exon-scaffold_224-1575043694:98291..98658Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:98911..99014TCONS_00053033-exon-scaffold_224-1491911889:98911..99014Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:98911..99014TCONS_00053033-exon-scaffold_224-1510915933:98911..99014Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:98911..99014TCONS_00053033-exon-scaffold_224-1575043694:98911..99014Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:99305..99389TCONS_00053033-exon-scaffold_224-1491911889:99305..99389Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:99305..99389TCONS_00053033-exon-scaffold_224-1510915933:99305..99389Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:99305..99389TCONS_00053033-exon-scaffold_224-1575043694:99305..99389Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1491911889:99910..100121TCONS_00053033-exon-scaffold_224-1491911889:99910..100121Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1510915933:99910..100121TCONS_00053033-exon-scaffold_224-1510915933:99910..100121Clytia hemisphaericaexon
TCONS_00053033-exon-scaffold_224-1575043694:99910..100121TCONS_00053033-exon-scaffold_224-1575043694:99910..100121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:94695..100121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.45854	0.432441	0.543706	0.108114	0	0	8.07582e-10	1.37118	0.175763	0.368562	0	0.437585	0.645124	0	0.808331	1.07445	2.75994	1.27545	0.0930835	0.815526	1.3282	0.97691	1.32991	0.263748	0.0821638	0.911304	0.191079	0	0	0.0532399
Blast
[Close]
BLAST of TCONS_00053033 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.067e-21
Identity = 72/290 (24.83%), Postives = 132/290 (45.52%), Query Frame = 2 
Query:  161 SLQMAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 1015
            SL+  V  G +F++    +D I A+   +DP    T + +  PI          +  ++IQ +     E    + SD + +WL  K     +D +  Q   H  + HLVS ++ +A  R +   HP++   + H   T+   +     L+      D +   G  G +Q+  +A     Y  L  P  +K +G+++K  I YY +RDD  ++WE +  FT +V+   Y+ D  V +DP LQ F  +  +        +GFP   +S++ +  +L   ++  +  H ++N+
Sbjct:  272 SLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556
The following BLAST results are available for this feature:
BLAST of TCONS_00053033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX54.067e-2124.83Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
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