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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053058 ID=TCONS_00053058|Name=TCONS_00053058|organism=Clytia hemisphaerica|type=transcript|length=2804bpRun BLAST on NCBI protein sequence of TCONS_00053058-protein >TCONS_00053058-protein ID=TCONS_00053058-protein|Name=TCONS_00053058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp MESEKRESSIDTNLTTDESPSRPLKRLTKKESRLNQFLKDLVSNAEQHKSRun BLAST on NCBI transcript from alignment at scaffold_225:1..71863- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053058 ID=TCONS_00053058|Name=TCONS_00053058|organism=Clytia hemisphaerica|type=transcript|length=71863bp|location=Sequence derived from alignment at scaffold_225:1..71863- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_225:1..71863- >TCONS_00053058 ID=TCONS_00053058|Name=TCONS_00053058|organism=Clytia hemisphaerica|type=CDS|length=24816bp|location=Sequence derived from alignment at scaffold_225:1..71863- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00053058 vs. Swiss-Prot (Human)
Match: CNBD2 (Cyclic nucleotide-binding domain-containing protein 2 OS=Homo sapiens GN=CNBD2 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.325e-19 Identity = 93/447 (20.81%), Postives = 208/447 (46.53%), Query Frame = 3
Query: 906 IPFNREDFTKNAEHVGCEVPTWAKEVLRREGPSRTVNDVYGLLRMLSILKKFNEKFTYSVRAVMCRMFTYSKVPRKRIVLREGHIGHDFYLIYTGSVFVNKQ--VFNKFTQKNEWKTVNVLRRGDSFGELALLQLNSFRSATIVTRDDTEFLIVPR-DVFSNVCPKALDAELNIKIDLIKETRVFQTWSEESLQALCLDSRVNQYPTNSVIVGNSKRNEEWLFMCLEGKCMAVKRLKFDPKDYATTPCNRS---HTLDDVEENPLXXXXXXXXXXXXXXXXXXKDRILQDWTNKFKRNDNCNLPNIIIEDHAED-DFHDVLEHSDEI------SVIRANAKEAIKQQQNEVISNLQKRSKDEAKSDIFMNIACLTTGDIFNFSSFMEMDKDSYDEDETSLISLGCKVVQIRRDSFFYLINSRNLYMAKEIAELS-RYPNNEQLVEKY 2204
+ F+ DF H P A ++++++ RT +++ + +L +L + + ++ ++ ++ + + R+R+++++G G+ FY IY G+V + K + F + +L +G FGE+ +L S R +TIV ++TEFL+V R D F+N + + + + + ++ +F +WS+E L L +++ ++ +I + + +F+ +G C ++ L D +P R L+ ++ PL ++ SP K LQD++ + LP++ + F + S + I++ ++IK +I+ EA ++ + + G+I + + D L+SLG ++++IR++ F+ LI++ + M K++ +L+ +P++E + +K+
Sbjct: 70 VTFDTMDFIAEEGHF----PPKAIQIMQKKPSWRTEDEIQAVCNILQVLDSYRN-YAEPLQLLLAKVMRFERFGRRRVIIKKGQKGNSFYFIYLGTVAITKDEDGSSAFLDPHP----KLLHKGSCFGEMDVLH-ASVRRSTIVCMEETEFLVVDREDFFANKLDQEVQKDAQYRFEFFRKMELFASWSDEKLWQLVAMAKIERFSYGQLISKDFGESPFIMFIS-KGSCEVLRLL-----DLGASPSYRRWIWQHLELIDGRPLKTHLSEYSPMERFKEFQIKSYPLQDFS-------SLKLPHLKKAWGLQGTSFSRKIRTSGDTLPKMLGPKIQSRPAQSIK---CAMINIKPGELPKEAAVGAYVKVHTVEQGEILGLHQAF-LPEGECDTRPLILMSLGNELIRIRKEIFYELIDNDD-EMIKKLLKLNIAFPSDEDMCQKF 488 The following BLAST results are available for this feature:
BLAST of TCONS_00053058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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