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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053059 ID=TCONS_00053059|Name=TCONS_00053059|organism=Clytia hemisphaerica|type=transcript|length=2360bpRun BLAST on NCBI protein sequence of TCONS_00053059-protein >TCONS_00053059-protein ID=TCONS_00053059-protein|Name=TCONS_00053059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=552bp MNAIIALCHFCEAHGPSILFCTQPFHCQNHTPNDIRNGVAPSPSLCGITYRun BLAST on NCBI transcript from alignment at scaffold_225:72048..82903- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053059 ID=TCONS_00053059|Name=TCONS_00053059|organism=Clytia hemisphaerica|type=transcript|length=10856bp|location=Sequence derived from alignment at scaffold_225:72048..82903- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_225:72048..82903- >TCONS_00053059 ID=TCONS_00053059|Name=TCONS_00053059|organism=Clytia hemisphaerica|type=CDS|length=33180bp|location=Sequence derived from alignment at scaffold_225:72048..82903- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053059 vs. Swiss-Prot (Human)
Match: FLCN (Folliculin OS=Homo sapiens GN=FLCN PE=1 SV=1) HSP 1 Score: 417.542 bits (1072), Expect = 1.707e-135 Identity = 237/585 (40.51%), Postives = 329/585 (56.24%), Query Frame = 3
Query: 24 MNAIIALCHFCEAHGPSILFCTQPFHCQNHTPNDIRNGVAPSPSLCGITYKRHNSDSSVSEATNESPEKPKS--STIPKPS---TCEGCRSIEPGQPGYISIDREYHISYISSQHPDEPELFAVLRHACVRSLSCEVCPGREGPIMFGDESSGYVFSHTFHLKDLQSRGFQRWYSLICVMMDRIFLVNSWQFLISNFKGIIDELQHKSERVYKEEQSSSKGPQSAEVLLHQPRNTLY-PDQFRRVGQVYRSLADITKDTDVFQYLHKMFGWILKAGGIERYTEKVLVGPPVEEYLLDENNQGETEFDKEIHDLLNDQNEDG----------------------------------PIFQSLIQMHKILGNANFLKMAYHVVRGDQLVVRGKYKRTAASVLETAKFLVPAGCVQGCRYHEPEYVDSFRCNFLGLQEEAQVPDHVLESDLFVLVDITTDKEEIEKSTVKSHFSSIDSSFDGTVFTV-AGADAGKE---PTYLKHVIQALKDETINDKVFQLILVTLKEQWMGKVKVMFKFSKTGMRTKDDKQKLLNILDATVDDEI-LLKYWMTSLSQSYRTHLLET 1643
MNAI+ALCHFCE HGP LFCT+ H P +G SP + S SP + S S+ P P CEGCRS+ G PGYIS D+E I Y+S QHP P+LF+++R ACVRSLSCEVCPGREGPI FGDE G+VFSHTF +KD +RGFQRWYS+I +MMDRI+L+NSW FL+ +GIIDELQ K+ +V++ EQ PQ A+ + NT + P +R G RSL +T D +++ LH F W+LKA G R TEK+L G P E+ L+ + E + E D + E+ P+F+SL M ++LG +F +A+HV+ G+Q++ + + S E + ++P GCV+ Y +Y +++RCNFLGL Q+P HVL S+ V+V++ +ST+ D S F V +G+ + PT L + AL ++ ++ V LV LKE+WM KVKV+FKF+K R K+D QKLL+IL A+ +D + LLK+WMT LS++Y++HL+ T
Sbjct: 1 MNAIVALCHFCELHGPRTLFCTEVLH----APLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRIYLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGC--PQRAQRM-----NTAFTPFLHQRNGNAARSLTSLTSDDNLWACLHTSFAWLLKACG-SRLTEKLLEGAPTEDTLVQMEKLADLEEESESWDNSEAEEEEKAPVLPESTEGRELTQGPAESSSLSGCGSWQPRKLPVFKSLRHMRQVLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTMLPVGCVRIIPYSS-QYEEAYRCNFLGLSPHVQIPPHVLSSEFAVIVEV----HAAARSTLHPVGCEDDQSLSKYEFVVTSGSPVAADRVGPTILNKIEAALTNQNLSVDVVDQCLVCLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSILGASEEDNVKLLKFWMTGLSKTYKSHLMST 568 The following BLAST results are available for this feature:
BLAST of TCONS_00053059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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