TCONS_00053060 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053060
Unique NameTCONS_00053060
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053060 ID=TCONS_00053060|Name=TCONS_00053060|organism=Clytia hemisphaerica|type=transcript|length=1346bp
GTCGAGATtagctttagactgtccaatatctcTATATTAGTTTACACTAA
CAGCCTTACTTGTTGATTCTTAAACAAGTAAGCAACATTATACTAGGGTG
ATGTTTTATGAGATACTGCAAACAATGCTTtttaaatcttctggacaaga
aatattttactttcaaaacaCACTTGAGGAGTTATTATTGTTTCACACTG
TCTTTCCTGTTTGAGTAAATATTAAACTCTCATACACCGCAACACTTTTA
GCAAAGCTTGGAGAACTCAGGAACTAAGGTGTGGAAAGCACAGCTCCCTA
GTTCTCAACTCCCCCCTAAAAGCTGAGTATATAAAAACTAAGATTAAATA
AAAGATCAAGGCTTGTACCACAGTAGCTTTTACTGACATTTATAGGAGCA
CATCTAAACTAAAATCTGTTCTAATTTGCAACCTCTCcaggtttgaaaaa
tatgattgctgaaaaaaccaaaacaattgATCCACTAGAGCCATTTCTCT
TATTGGGGAAGAATGTTCGAGGAGCTGCTGCTTCACAACTAGTGCAACAA
GTAACTGAAGCCCCTAATGTATTTGTTTTTGGAGAACTACTCCAACTTGA
TGGTATTAAGGAGTtggaaaacaatgaaacacattcACAATATTGGAGGC
TCCTACAATTGTATGCATTTGGTGTTTACAAGgagtttcaagaaaaaaaa
gaaagtcttCCAGAATTGAATGATGCTCAAATAAGAAAGCTACGTCTTTT
GACACTAGCTACACTAGCCTCAAAATCAAAGTTTGTCTACTATGACAGTT
TGAAAAGTAGCTTAGGACTTGATAATTTGAGACAGTTGGAAGACTTGATT
ATTGAAGCGATATATGCAGATATCTTACAAGGGAAAATCAACCAAAAGGA
GAAGCGTTTGGAAGTTGATTTTGTGGTTGGTCGAGATATAAAGCCAGAGA
TGATTGAAACCATCATTGATACTCTTCAAAACTGGTCAGCAAAATGTGAA
GCTGCAATGGTAAATCTGGACGTACAAAGCAGTCGtgcaaatgtaaacaa
agaatCTAAAGCCCAACACCGTAAAGATATCGAAAATAATATTGAGAGTA
TGAAGAAGATACATCGGGCACAGGATATGCAACAAGTTCTGGAACCAGAA
TCCAGTGGTTCTCCAGTAGCTAGAAATCAGAAGATGAAAGCATCTTCAAA
GACTATAATGAAATCTGCAGTGAAACCATCAACGTCAAGAACGAAATAAT
TTCACAACATTCACTCTAGAAACATTTCTTATTGTTTATAATTTGTATTT
ATTTGCAACAGCTTTCTTACAAGATCGAGAAGAATCTTTCCATGAC
Run BLAST on NCBI

transcript from alignment at scaffold_225:83144..84489-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053060 ID=TCONS_00053060|Name=TCONS_00053060|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at scaffold_225:83144..84489- (Clytia hemisphaerica)
GTCGAGATTAGCTTTAGACTGTCCAATATCTCTATATTAGTTTACACTAA
CAGCCTTACTTGTTGATTCTTAAACAAGTAAGCAACATTATACTAGGGTG
ATGTTTTATGAGATACTGCAAACAATGCTTTTTAAATCTTCTGGACAAGA
AATATTTTACTTTCAAAACACACTTGAGGAGTTATTATTGTTTCACACTG
TCTTTCCTGTTTGAGTAAATATTAAACTCTCATACACCGCAACACTTTTA
GCAAAGCTTGGAGAACTCAGGAACTAAGGTGTGGAAAGCACAGCTCCCTA
GTTCTCAACTCCCCCCTAAAAGCTGAGTATATAAAAACTAAGATTAAATA
AAAGATCAAGGCTTGTACCACAGTAGCTTTTACTGACATTTATAGGAGCA
CATCTAAACTAAAATCTGTTCTAATTTGCAACCTCTCCAGGTTTGAAAAA
TATGATTGCTGAAAAAACCAAAACAATTGATCCACTAGAGCCATTTCTCT
TATTGGGGAAGAATGTTCGAGGAGCTGCTGCTTCACAACTAGTGCAACAA
GTAACTGAAGCCCCTAATGTATTTGTTTTTGGAGAACTACTCCAACTTGA
TGGTATTAAGGAGTTGGAAAACAATGAAACACATTCACAATATTGGAGGC
TCCTACAATTGTATGCATTTGGTGTTTACAAGGAGTTTCAAGAAAAAAAA
GAAAGTCTTCCAGAATTGAATGATGCTCAAATAAGAAAGCTACGTCTTTT
GACACTAGCTACACTAGCCTCAAAATCAAAGTTTGTCTACTATGACAGTT
TGAAAAGTAGCTTAGGACTTGATAATTTGAGACAGTTGGAAGACTTGATT
ATTGAAGCGATATATGCAGATATCTTACAAGGGAAAATCAACCAAAAGGA
GAAGCGTTTGGAAGTTGATTTTGTGGTTGGTCGAGATATAAAGCCAGAGA
TGATTGAAACCATCATTGATACTCTTCAAAACTGGTCAGCAAAATGTGAA
GCTGCAATGGTAAATCTGGACGTACAAAGCAGTCGTGCAAATGTAAACAA
AGAATCTAAAGCCCAACACCGTAAAGATATCGAAAATAATATTGAGAGTA
TGAAGAAGATACATCGGGCACAGGATATGCAACAAGTTCTGGAACCAGAA
TCCAGTGGTTCTCCAGTAGCTAGAAATCAGAAGATGAAAGCATCTTCAAA
GACTATAATGAAATCTGCAGTGAAACCATCAACGTCAAGAACGAAATAAT
TTCACAACATTCACTCTAGAAACATTTCTTATTGTTTATAATTTGTATTT
ATTTGCAACAGCTTTCTTACAAGATCGAGAAGAATCTTTCCATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033515XLOC_033515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053060-exon-scaffold_225-1575043694:83144..84489TCONS_00053060-exon-scaffold_225-1575043694:83144..84489Clytia hemisphaericaexon
TCONS_00053060-exon-scaffold_225-1510915933:83144..84489TCONS_00053060-exon-scaffold_225-1510915933:83144..84489Clytia hemisphaericaexon
TCONS_00053060-exon-scaffold_225-1491911889:83144..84489TCONS_00053060-exon-scaffold_225-1491911889:83144..84489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:83144..84489 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.712442	0.344221	0.131217	0.509152	0.552506	0.369454	0.519469	0.164439	0.373025	0.236486	0.87182	0.570867	0.486482	0	0.873873	0.536059	0.0836181	0.412723	0.575105	1.04277	0.623704	0.461527	0.401243	0.238595	0.141459	0.388694	0.309131	0.603758	0.40889	0
Blast
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BLAST of TCONS_00053060 vs. Swiss-Prot (Human)
Match: CSN7B (COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.324e-51
Identity = 106/257 (41.25%), Postives = 158/257 (61.48%), Query Frame = 2 
Query:  452 MIAEKTKTIDPLEPFLLLGKNVRGAAASQLVQQVTEAPNVFVFGELLQLDGIKELENNETHSQYWRLLQLYAFGVYKEFQEKKESLPELNDAQIXXXXXXXXXXXXXXXKFVYYDSLKSSLGLDNLRQLEDLIIEAIYADILQGKINQKEKRLEVDFVVGRDIKPEMIETIIDTLQNWSAKCEAAMVNLDVQSSRANVNKESKAQHRKDIENNIESMKKIHR------AQDMQQVLEPESSGSPVARNQKMKASSKT 1204
            M  E+  + + LE F+LL K   G+A + L+ QV EAP V+VFGELL+L  ++EL     ++ Y +LL L+A+G Y ++   KESLPEL+ AQ  KL+ LT+ +LAS+ K + Y  L   L + NLR+LEDLIIEA+Y DI+QGK++Q+ + LEVDF +GRDI+ + I  I+ TL  W   CEA ++ ++ Q  RAN  KE+  + ++ +E  + ++KK  +      AQ+M+Q L          + Q  K  SK 
Sbjct:    1 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEG-ANAAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKV 256
The following BLAST results are available for this feature:
BLAST of TCONS_00053060 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN7B4.324e-5141.25COP9 signalosome complex subunit 7b OS=Homo sapien... [more]
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