TCONS_00053062 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053062
Unique NameTCONS_00053062
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053062 ID=TCONS_00053062|Name=TCONS_00053062|organism=Clytia hemisphaerica|type=transcript|length=639bp
CTAAGATATACacttataaaaacactggagaaaaaataagaatttattAT
ATCGATTGGGGAGTTGGCAAGGACTGGGAGAGAACAAGCCACCTTGGTTA
CAAAGGGGCTGCCGCTGTTGTACTTTGTTTTTCTATTGGATCTAGGAGCA
GTTTTGAAAACATTGAAGAGTATTGGTACccattcatgaaaaaatatgca
TCAAAAGCACCCATTGTGTTGTGTGGTACAAAAACAGATATGAGAACTGA
CGAGTTAGCAAAGCATAATCAAAAACCAATAACTAATGTTGAAGGTAAAA
AATTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAATGCTCAAGTGTT
GAAGGAAGAGGAGTAAAAGAACTTTTTGATGCAGCAGCAGAGGCTACTCA
TCCTGATATTACCAAAACCAAATCAGAAGAATGCTCAGTTATGTAAATTG
CACACTCGATCGGGCTTCTGATTAAGgatattaaaacaaaagaatcactC
GTGCtaaattattctcgaattgcactcgttatcatgtgatcaCATATGCA
GAGCTTTTTTTACTGAAATAATcttattattgttgttgttaATTATTGTT
AGTGCAGTCAAATCTCTATAACTCCAACCTGCatggaaa
Run BLAST on NCBI

transcript from alignment at scaffold_225:98994..99632-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053062 ID=TCONS_00053062|Name=TCONS_00053062|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_225:98994..99632- (Clytia hemisphaerica)
CTAAGATATACACTTATAAAAACACTGGAGAAAAAATAAGAATTTATTAT
ATCGATTGGGGAGTTGGCAAGGACTGGGAGAGAACAAGCCACCTTGGTTA
CAAAGGGGCTGCCGCTGTTGTACTTTGTTTTTCTATTGGATCTAGGAGCA
GTTTTGAAAACATTGAAGAGTATTGGTACCCATTCATGAAAAAATATGCA
TCAAAAGCACCCATTGTGTTGTGTGGTACAAAAACAGATATGAGAACTGA
CGAGTTAGCAAAGCATAATCAAAAACCAATAACTAATGTTGAAGGTAAAA
AATTGGCTCAAAAAATTAAAGCTGTAGGTTATTTTGAATGCTCAAGTGTT
GAAGGAAGAGGAGTAAAAGAACTTTTTGATGCAGCAGCAGAGGCTACTCA
TCCTGATATTACCAAAACCAAATCAGAAGAATGCTCAGTTATGTAAATTG
CACACTCGATCGGGCTTCTGATTAAGGATATTAAAACAAAAGAATCACTC
GTGCTAAATTATTCTCGAATTGCACTCGTTATCATGTGATCACATATGCA
GAGCTTTTTTTACTGAAATAATCTTATTATTGTTGTTGTTAATTATTGTT
AGTGCAGTCAAATCTCTATAACTCCAACCTGCATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033516XLOC_033516Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053062-exon-scaffold_225-1575043694:98994..99632TCONS_00053062-exon-scaffold_225-1575043694:98994..99632Clytia hemisphaericaexon
TCONS_00053062-exon-scaffold_225-1510915933:98994..99632TCONS_00053062-exon-scaffold_225-1510915933:98994..99632Clytia hemisphaericaexon
TCONS_00053062-exon-scaffold_225-1491911889:98994..99632TCONS_00053062-exon-scaffold_225-1491911889:98994..99632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:98994..99632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85643	2.04097	1.43542	0.925728	1.06041	0.235732	0.634538	1.67675	2.2567	1.15452	6.79954	0.979416	2.00596	1.35748	1.00835	1.23746	2.00778	1.50256	1.31559	1.39249	1.80544	1.97832	2.05181	2.64356	2.61649	2.96621	1.42821	1.45059	1.56199	1.7422
Blast
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BLAST of TCONS_00053062 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.077e-27
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 3 
Query:   27 GEKIRIYYIDWGVGKDWERTSHLGYKGAAAVVLCFSIGSRSSFENIEEYWYPFMKKYASKAPIVLCGTKTDMRTD-----ELAKHNQKPITNVEGKKLAQKIKAVGYFECSSVEGRGVKELFDAAAEATHPDITKTKSEECSVM 443
            GE   +   D    +D++R   L Y      ++CFS+ S SSFEN++E W P +  +  K P +L GT+ D+R D     +LAK+ QKPIT    +KLA+ +KAV Y ECS++  +G+K +FD A  A        KS  C ++
Sbjct:   48 GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL 191
The following BLAST results are available for this feature:
BLAST of TCONS_00053062 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC426.077e-2737.50Cell division control protein 42 homolog OS=Homo s... [more]
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