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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053068 ID=TCONS_00053068|Name=TCONS_00053068|organism=Clytia hemisphaerica|type=transcript|length=1141bp
aaataacgttattttaacgttaaaacaacgttgtgttccAGTTGggaata
attttgaatttttatggtaATTTGAGAGAAAGCTGGATCTGATATTTGGT
GAACATTCGTAGGATAGATATATAAGAAGTGGCTTTAAAAAGCTTGGGAA
TTCCAGACTATGActgaaagcttgaaaaatggATTTCTTCAATAGGAAGC
GAAAGTTATCATTTGGtaataataaatcaaaacaatctgAAAATAAAGAC
AAGGGTTCAATCACGAAGGCGCGGGTCGCGGTGTTCGGATGCGGACGAGT
CGGAAAAACATCGATCATTAAACGATATTTATACGAAGAATTCGATCACA
ACTACTATGAAACAATCGAGGACATTCACAAAAAAGTTGTATTCTGTAAT
AACCAATCGATTGAATTAACAGTACTCGATACAGCGGGTAATTATCAATT
CCCAGCCATGCGTGAACTAGCGATAAAACAGAGTAACGGCTTTATACTTG
TTTACGCCATTGACAATGTCCCTTCTTTCGAAGAAGCGATTCGTTTACGA
GATATTATTGTATCAGTTAAAAACAATGAAGATACCCCGATCCTATTAGT
CGGTAATAAAACGGATGCAGGCTTTCGGCGAGTACAAAGAGTCGAGGCTA
GTGCCGCAATGAAAGATTGGGGCTCTAAAGCACAACACATAGAGACAtca
gcaaaaaataatgaaaatatcgATTTACTTTTTAACAGTCTAATAGCAAT
GATTGACGAACAGAATAATGAGCAATTAGAACTATCAACTTTTAAAGACG
CAACTCGATATCGGTTCAGCAGTATGCGACAATCTGTCCGTAACTCGACG
AGGCGGGCGTCCGCTAAGACTTTATCATTCGTTCGCCGTGAGAAAAGTCA
GACGCAACCAATGGTTAACGGCAGGAAGACACTACAAAGTATTTCGTAGC
ATAAATCACAAAGACACGCGGAATACGAATAAGATAGCGTGCCAGCAGAT
AGTCGTAAAGCCATAAAGACGATTTATTTCGCTGAGATTAATTGGGATAT
TCCATTTTATGTCCATACAGGTGGCTGGACAAATATTTCCAGGGGTTGAT
TTATACAGAATATCCAGGAGGTCTAAAAGAAcgtgtttttt Run BLAST on NCBI transcript from alignment at scaffold_225:123566..126601- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053068 ID=TCONS_00053068|Name=TCONS_00053068|organism=Clytia hemisphaerica|type=transcript|length=3036bp|location=Sequence derived from alignment at scaffold_225:123566..126601- (Clytia hemisphaerica)
AAATAACGTTATTTTAACGTTAAAACAACGTTGTGTTCCAGTTGGGAATA
ATTTTGAATTTTTATGGTAATTTGAGAGAAAGCTGGATCTGATATTTGGT
GAACATTCGTAGGATAGATATATAAGAAGTGGCTTTAAAAAGCTTGGGAA
TTCCAGACTATGACTGAAAGCTTGAAAAATGGATTTCTTCAATAGGAAGC
GAAAGTTATCATTTGGTAATAATAAATCAAAACAATCTGAAAATAAAGAC
AAGGTAAAGAGATAAGTTGGTGACTGGGGCGGTGAAAAGGGGTGGTGGGT
GGGCGGCGATATACAAGGCGGGTGAGAGGGTGGAACTGTATACACTGAAA
AGCAGGCAAAAGGGTGCGGTGGGCCGATACGTCCATACACCCTGCGCAAT
AACCTTGATCCTTCTCTTTATATTTTTGAGAAGAACGATATCAAATGCTT
GGTCGTCAAAATGCTAAGTTAAGTGACAATACACTTTTTCGACCGTAGTC
GCGCGGTCAGGCGCGTACCACTTTATTGTTAAATTTATACCACCCTAAAC
TCGATCCAATCCTTTTTTCTACACTTTTTTCTATTGTATTTAGGTGCGAA
AAAAGACTGGGACGGTTTTAGGGTGGTAAAACGTACAAAAAATGCCAATT
GGCAGCTACGGCCGAAAAGGTGTACAGTGGAACCTCTAATTAGCGGACAC
CATCGAGGAAATGGGTTAGTGTCCGCTAATTAAAGTCTATTCATGATAAG
TGTGCACTCTTTTTTCTTTTACCTATAACTTTTGAAGGAATTCTTCAATC
TTTATAAATTTGGTATCATTGAAAAGATATTGAAATAACAATTTGGAATA
AAAAAATCTTTAAAAAATTCTAAAACTGAAGATGGAGATGAAGAAGAAAA
AAATGAAGATCTTGTAGAAAGGTACTATAACTTTCATTTTCACTGGAGAG
ATTTTTTGATCTTAGGAGATCATCACTGTGAAGAAATTTCATTAAAATAT
TTATTCAATATAAAGCTATGATACAAAGTTAATAAGTGATTGACCCCAAA
AAACAGCAAAAAACTGCAGAAAACAGCGTTTTTAGACGTCAATCAGCCTA
TAACTTTGTTTGATATCTTTTGACTGAATGATTATTTTTCAGATTTTTTT
TCACAGTGATGACGTTCGATGATCAAGGATTAACTTCAATGAAAATGATA
GTTATAGCACTTTTCTACAAGATCTTCATTTTTTCTTCTTCATTTTCATC
TTCATTTTTAGAATTTCTTTAAAGATCTTTTTATTTCAAATTGTTCCACT
CAGTAATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATTCAT
TCAAAAGTTATAGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGA
CTTTAGAAGTGTCCGCCTTTTAGAAACTTTTGATCTCGGAGCTCCAATTT
TGAAATTAGGCCATCCCAGGGTGTCGAAAGTACAAAATTGGGGTCTAAAG
TACTTATCTGCAGACACTAGGCCATAGAAGAACAAGAGAAAGGTTATTAA
AACGCAACAATTTAGTTTTTAACAAATAAAAGAAAAATCAGTGATTTTTG
ATTTCTTTGGCTCACCTAAATTCGTTGAATGGGTCAAGGGGAAAACTGGA
AATTTGTAGAAATAATTTGAATAATAAGACTAATAAGTGCTTGAAATAGA
AATATCTAAAAACATTTCTTCGATTTTGGACGTCTGTCACCCGTTTGATA
TTCAATGTCCGCTAATTGGAGAGCTAAAATAGGGATTTTGGCCATTTCGT
GCGAAAAAATTTGTCCGCAAATCAGAGGGTCCGCTAATTGAGTGTCCGCC
TTTTAGAAACTTTTTTATGAGGATTTGACTAGGAAACGGCCGGGGAAAAT
GAAATTGTCCACTAATCAGAGGTGTCCGCCTTTTAGAGTGTCCGTTAATT
AGAGGTTTTACTGTATGCGATTGATGAATCAAATTTNACTAATCAGAGGT
GACCGCCTTTTAGAGTGCCCGTTAATTAGAGGTTTTACTGTATATAGTCG
ACTCAGCAGTTGAAAACATGTGAAGTGTCATAGTGTTAGTTGATCTGTCA
GTTTTAAAAGAATTCTTATTAATGAAACATTCTTTTATTATTATTCAGGG
TTCAATCACGAAGGCGCGGGTCGCGGTGTTCGGATGCGGACGAGTCGGAA
AAACATCGATCATTAAACGATATTTATACGAAGAATTCGATCACAACTAC
TATGAAACAATCGAGGACATTCACAAAAAAGTTGTATTCTGTAATAACCA
ATCGATTGAATTAACAGTACTCGATACAGCGGGTAATTATCAATTCCCAG
CCATGCGTGAACTAGCGATAAAACAGAGTAACGGCTTTATACTTGTTTAC
GCCATTGACAATGTCCCTTCTTTCGAAGAAGCGATTCGTTTACGAGATAT
TATTGTATCAGTTAAAAACAATGAAGATACCCCGATCCTATTAGTCGGTA
ATAAAACGGATGCAGGCTTTCGGCGAGTACAAAGAGTCGAGGCTAGTGCC
GCAATGAAAGATTGGGGCTCTAAAGCACAACACATAGAGACATCAGCAAA
AAATAATGAAAATATCGATTTACTTTTTAACAGTCTAATAGCAATGATTG
ACGAACAGAATAATGAGCAATTAGAACTATCAACTTTTAAAGACGCAACT
CGATATCGGTTCAGCAGTATGCGACAATCTGTCCGTAACTCGACGAGGCG
GGCGTCCGCTAAGACTTTATCATTCGTTCGCCGTGAGAAAAGTCAGACGC
AACCAATGGTTAACGGCAGGAAGACACTACAAAGTATTTCGTAGCATAAA
TCACAAAGACACGCGGAATACGAATAAGATAGCGTGCCAGCAGATAGTCG
TAAAGCCATAAAGACGATTTATTTCGCTGAGATTAATTGGGATATTCCAT
TTTATGTCCATACAGGTGGCTGGACAAATATTTCCAGGGGTTGATTTATA
CAGAATATCCAGGAGGTCTAAAAGAACGTGTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053068-exon-scaffold_225-1575043694:126349..126601 | TCONS_00053068-exon-scaffold_225-1575043694:126349..126601 | Clytia hemisphaerica | exon |
| TCONS_00053068-exon-scaffold_225-1575043694:123566..124453 | TCONS_00053068-exon-scaffold_225-1575043694:123566..124453 | Clytia hemisphaerica | exon |
| TCONS_00053068-exon-scaffold_225-1510915933:126349..126601 | TCONS_00053068-exon-scaffold_225-1510915933:126349..126601 | Clytia hemisphaerica | exon |
| TCONS_00053068-exon-scaffold_225-1510915933:123566..124453 | TCONS_00053068-exon-scaffold_225-1510915933:123566..124453 | Clytia hemisphaerica | exon |
| TCONS_00053068-exon-scaffold_225-1491911889:126349..126601 | TCONS_00053068-exon-scaffold_225-1491911889:126349..126601 | Clytia hemisphaerica | exon |
| TCONS_00053068-exon-scaffold_225-1491911889:123566..124453 | TCONS_00053068-exon-scaffold_225-1491911889:123566..124453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:123566..126601 - |
Blast
BLAST of TCONS_00053068 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 4.826e-35 Identity = 68/160 (42.50%), Postives = 99/160 (61.88%), Query Frame = 2
Query: 272 RVAVFGCGRVGKTSIIKRYLYEEFDHNYYETIEDIHKKVVFCNNQSIELTVLDTAGNYQFPAMRELAIKQSNGFILVYAIDNVPSFEEAIRLRDIIVSVKNN-EDTPILLVGNKTD-AGFRRVQRVEASAAMKDWGSKAQHIETSAKNNENIDLLFNSLI 745
RVAVFG G VGK+S++ R++ F +Y T+ED +++V+ C+ L + DT G++QFPAM+ L+I + + FILVY+I + S EE + + I +K + E PI+LVGNK D + R VQ EA A + W K +ETSAK N N+ LF L+
Sbjct: 9 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--KCAFMETSAKLNHNVKELFQELL 166
The following BLAST results are available for this feature:
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