TCONS_00053069 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053069
Unique NameTCONS_00053069
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053069 ID=TCONS_00053069|Name=TCONS_00053069|organism=Clytia hemisphaerica|type=transcript|length=1713bp
TGTCATTATTATTAAATATTGGAGATTTATCGCATTTGGTCATACTGATA
GATTGTCGAACAGAAAATATCTTgcattaaatattttttgattttctatc
tTTTAGCGTGGAATTTTTCATAGCTGTGAGCTTGAAATCAAGTTGGTGAA
GGTTAGGACCAcatttccagtgttaaattagatttaaaaattggaactaa
AAATAAGGAAGTCAAAGATTGTTTGGGTTCCACCTTGTTGCTCGCATTTC
CGGTTTGAAATCTTCGTTTGTTTTCTTCAAGAAGGAAGGAGGAGTTGAGt
aaaattgttttgaatttgaaaaacagttgGACAATTCGACGTTAGAGATC
GTTTTTATTGGATATTGGCTTTATACCTCCAAATATTAATATTGTTCGGA
agattgtgaattaaagttttaaaatcaattatttaAGTGATTCTGTAGAT
ATGAGCTGAATGACATACTGCTGAGCTAAAAATTGACCAATGATTCTGGA
AATCTGACATATGTTGTTTTCATATCCTATTTTTTACTATttgtcaaaac
tttaaaacatttTGCAAAGAGGGAAGAGAATTGTATCATTTGAAGAGTAT
TTCCGGAAAAACGAAATCGAAATCTTTTAGAGAGTACAAACAAGAGGTCC
AGTAACCTTAAGGACCAAAGGACATTTGGACATTTTCATAATCAAAACAT
AGGCAATCcaaataatgagccaatcaaTACCATACAGAAATTCAATCTCA
TATGAAAGCGAAAGGAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAA
AGAAAAGATCATTGCATCACGACAGGGTTCAATCACGAAGGCGCGGGTCG
CGGTGTTCGGATGCGGACGAGTCGGAAAAACATCGATCATTAAACGATAT
TTATACGAAGAATTCGATCACAACTACTATGAAACAATCGAGGACATTCA
CAAAAAAGTTGTATTCTGTAATAACCAATCGATTGAATTAACAGTACTCG
ATACAGCGGGTAATTATCAATTCCCAGCCATGCGTGAACTAGCGATAAAA
CAGAGTAACGGCTTTATACTTGTTTACGCCATTGACAATGTCCCTTCTTT
CGAAGAAGCGATTCGTTTACGAGATATTATTGTATCAGTTAAAAACAATG
AAGATACCCCGATCCTATTAGTCGGTAATAAAACGGATGCAGGCTTTCGG
CGAGTACAAAGAGTCGAGGCTAGTGCCGCAATGAAAGATTGGGGCTCTAA
AGCACAACACATAGAGACAtcagcaaaaaataatgaaaatatcgATTTAC
TTTTTAACAGTCTAATAGCAATGATTGACGAACAGAATAATGAGCAATTA
GAACTATCAACTTTTAAAGACGCAACTCGATATCGGTTCAGCAGTATGCG
ACAATCTGTCCGTAACTCGACGAGGCGGGCGTCCGCTAAGACTTTATCAT
TCGTTCGCCGTGAGAAAAGTCAGACGCAACCAATGGTTAACGGCAGGAAG
ACACTACAAAGTATTTCGTAGCATAAATCACAAAGACACGCGGAATACGA
ATAAGATAGCGTGCCAGCAGATAGTCGTAAAGCCATAAAGACGATTTATT
TCGCTGAGATTAATTGGGATATTCCATTTTATGTCCATACAGGTGGCTGG
ACAAATATTTCCAGGGGTTGATTTATACAGAATATCCAGGAGGTCTAAAA
GAAcgtgtttttt
Run BLAST on NCBI

protein sequence of TCONS_00053069-protein

>TCONS_00053069-protein ID=TCONS_00053069-protein|Name=TCONS_00053069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSQSIPYRNSISYESERKEREKEVMRQIKEKIIASRQGSITKARVAVFGC
GRVGKTSIIKRYLYEEFDHNYYETIEDIHKKVVFCNNQSIELTVLDTAGN
YQFPAMRELAIKQSNGFILVYAIDNVPSFEEAIRLRDIIVSVKNNEDTPI
LLVGNKTDAGFRRVQRVEASAAMKDWGSKAQHIETSAKNNENIDLLFNSL
IAMIDEQNNEQLELSTFKDATRYRFSSMRQSVRNSTRRASAKTLSFVRRE
KSQTQPMVNGRKTLQSIS
Run BLAST on NCBI

transcript from alignment at scaffold_225:123566..131129-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053069 ID=TCONS_00053069|Name=TCONS_00053069|organism=Clytia hemisphaerica|type=transcript|length=7564bp|location=Sequence derived from alignment at scaffold_225:123566..131129- (Clytia hemisphaerica)
TGTCATTATTATTAAATATTGGAGATTTATCGCATTTGGTCATACTGATA
GATTGTCGAACAGAAAATATCTTGCATTAAATATTTTTTGATTTTCTATC
TTTTAGCGTGGAATTTTTCATAGCTGTGAGCTTGAAATCAAGTTGGTGAA
GGTTAGGACCACATTTCCAGTGTTAAATTAGATTTAAAAATTGGAACTAA
AAATAAGGAAGTCAAAGATTGTTTGGGTTCCACCTTGTTGCTCGCATTTC
CGGTTTGAAATCTTCGTTTGTTTTCTTCAAGAAGGAAGGAGGAGTTGAGT
AAAATTGTTTTGAATTTGAAAAACAGTTGGACAATTCGACGTTAGAGATC
GTTTTTATTGGATATTGGCTTTATACCTCCAAATATTAATATTGTTCGGA
AGATTGTGAATTAAAGTTTTAAAATCAATTATTTAAGTGATTCTGTAGAT
ATGAGCTGAATGACATACTGCTGAGCTAAAAATTGACCAATGATTCTGGA
AATCTGACATATGTTGTTTTCATATCCTATTTTTTACTATTTGTCAAAAC
TTTAAAACATTTTGCAAAGAGGGAAGAGAATTGTATCATTTGAAGAGTAT
TTCCGGAAAAACGAAATCGAAATCTTTTAGAGAGTACAAACAAGAGGTCC
AGTAACCTTAAGGACCAAAGGACATTTGGACATTTTCATAATCAAAACAT
AGGCAATCCAAATAATGAGCCAATCAATACCATACAGAAATTCAATCTCA
TATGAAAGCGAAAGGAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAA
AGAAAAGATCATTGCATCACGACAGGTAAGCAAGTTTTACATTTTTACGA
GAATTTTGATTAAAAGGAGGGCGGTCCATTTTGGGACACGATTGGCCAAG
GGTTCAGTAGCCTAGACGAGAGATGTGCATAATTTCTGTAGAGAAGCAGA
TTGACGCTGTAATTATCGTTTCATACACAAATTTTGCGTCCCTCTTGTCT
ACGCTACTGGGGTTGAAAACATTTACTTAGCCTTAAAGCTAAACACATAT
ACTCCACTGTTTGTGCAGAGTTCAAGCACTGATCACTAGCAAGAGTAAGC
CACCATATTTCAAAAGAGTTCATCATTCTATGATTAATTAGATTTGATTT
TCTAAAATGTTATCTTTTGAAGTATTTGATGTTTTTTGGAAAAGGTAGAT
AATAAGGGTCAACAATTTCTTCCACAGCTAAATACTTCGCAGCTTTAATT
TGACTTGGATAAGACAGAAAAGAACAGTATAAGATAAAGAAAACTGGTTA
AACTATATAGTAAGGCAGTCATTCTGAATACAACATATTTTGTTAGGAAA
TTGCACTCATTGCAACACGAATATAACTTTTGTGGTCAGAGCGCCATGGA
AACTAGTCAACTGAGAAAAAACGGGTATAGTGTTGTTTCGAAAGGCTTAT
AACGCCAGCCCCCTATAAATAGGACTAATAGCAATAATTAAAGACAGTGA
CCTGATTTTAGCAATAAATTCATACATGTCACATGTTTCATTCAGAAAGT
TATTCACTCCCTCGATTAAGATTGACAAGATGCGCCACCAATAAAATTAT
TGAAAAAATAAAACTTGGAAGAGACTTCATCAATTAAAATATTGACCCAA
TCGAAATGATTTCGCATCCCTATTTGCAGCCTTATAAATCGAGTGGGAGT
TAGTGACTCGGAATATGGGACAACAAGTTGATATTCTCATAAAAAAGTGG
TTAAGAACAATAATCTATCAAACGAAAAAATATTTTTTGATAAATTTATA
TTATATCACTCTCCTAAGATCCGCAATTTGCGATCCTATGTTATTGCTTT
TTTTTTTTTTTGATTGTGCAGATAACTATCGTACGAATTTATCCTTACTC
AACTAAAAAGAGCTCACTATCACTTTCGAAATTCCTATTGGCAATATATG
GTGTAACCATAGATGTAGAAAATTTATGTTGATAAAAATTTGGCTGATGA
TCCATACGACTTGGCATGAAACTTGTACCAATATCTATATTACCAATAAA
GTTATATTCTCAACCAAACGTAAACAGCTCTGACTCAGAAGACCTAGAAT
TGTGATGAAGAGGATATAAAGAATATAAATATCTCAATAAAATCCATTTG
ACGAATTTGAGTCTCTATTGTTTTAGCTCTGGAGTATTACTCTAACGGGA
TGGCTATTCCCTTATAATACACCCCTGTCTCACAGACCCGGTGGGACAAT
TAGACAAAGTCCGAAATTTTTAATCTCTAAGCGGCCTTTTTTTGGGACCC
AAAATAGGTTGTCCATTTTAATTTTAATTTTGCTACATATTAAGAATGAT
GATATTCGAACGATTAACTGAGTAAAAGTTTGATCTCATTTAGGTCATGA
CAATTTTGCTTTTTTATGTTGATATTTCGTCAATACTTTGTTTTGGTTCC
AAATCCAAATCCAAATCTATGGTTGAGCAGAAAAAACTGTGAGGTTGATC
TGTGATGGCTCCACTTTTAGACCTCAGGTTTTTCTTCAAGACTAGGATAA
CTAGTTACTAGGGAAGTTAAAAAATGTCGATGATAAATTTTTAAAAAGCC
GATTTCTTTTCTGATTCCTCTATTGAAATACAAAGCATGACATAACAGTG
ACATAACAGTAACATAAAAGCTTGTAGCTTGAAAGTTAGACCATAATTTT
GATACTATTGGAAATATATATTTCCATATTCTCTCGAAAAATATTCGGTC
TAGGCCCCCCAACGTGGTCAAGAGCTATGGCTATAGTTAAAAACTTTGGT
ATTTTGACCTCACTTGACGCATATAATTGTTTCTTTAAGACTTTTAAAGT
TAAAGGGTTTAATGGCTGAGGGTATTGTTTTTCCGATAGGACTGAAATTC
CAATCAAATCATCAGGAGGATACCCTACCTAGCAGGTCATTTTTTAGACG
GGGTGTATTTTCAAGTTAACTTAAAAAACATTATTAGTAGAAATGTATCA
TTTTCATCTTCCAAAAAAAGTAGAGATTCAGGCCTGGAAAAAAGTCTTAA
TTACGCATGCTTACATAACAGTGAGTCTCTTTAATGTTAACAACATATTG
TCAAGAGAATTAGTGGTCACCATAAAATCACATTACGATGATTAAAAATT
AATCACCAAATTAAACATGGCGAACGACATGAAACATTTTTTAATGTTGT
CTGCCTAATTACATCAGCTGTCCCACGTTTTGCCAAAAAGTATTTTGCGT
GTATTGAAAGAATCGAACGACGGGGCTTTTCTCCAGTCAAAGCATTGAGG
TAGGTTCGTCTTACAAATCCTGTCATTGTAACACGCATGCGTAATTTGTC
GTCCTTTCAAACCACATCGTGTCATAAACAAAGCAGAATGAATTTGTAGG
GGTGATGCAAGAACTTATGGTCGGGGTTGTTGACGGCAAAATATGAAATT
TGTCGTTCTTTTTTGTCATTCTTTATGAAATTTGTCGTCCTTTTTGTCTA
TTTTTAGCGATGCAGGATAGACCACCTCATAGAGGACTTTAAAAATAGTA
TTTGTTAAAATATAAATAATTCATAAAAATCCTAATTATTGATTTTCCCT
AAGTCTCATTTTTCCACGTTCACAATAAATAATGAAGAACCCATAGATAA
GAAAATCACTGATTTTTCAAAATAGGGAGGAAAGTGGGCGTGGTTATGTC
TTGCTATGACAATGATAGGGAGTCTAAAGAAAAGTCACTGTTCTTTTGAG
TAGCCCATTTTACCCAAATATAATTAATATTCCGGCTTTAAAAACTGATT
TTTATAGCAATAGACATATAATAATTTATAGAGAAAGGGCTGGAAAACAG
TGATATACAATAAATCTTTATTTTTCGAAAATTGTTTGATAAGTTGATGT
TTTGGAAACCGGTTGTCCTTTGAGGACTCGACTCTGTTCGAATTTCAAGT
CGAGATTGTTACACTGATATTATTTGTTTAGTCAAAATCTCAATATTATG
TAATAAAATATACGTTTCCATGAGCAGAAGATATTACGAACCCATTACTT
TTAGGGGTCTCAAAAAGATTTTGGTGAAAAGAGAAAAAATCGAAAAAATC
AATTTTCATGGAAGTAGAATATTTGGAATCACATAATTTTCACTATTCAA
CAAAGCTGATTTTTATTGGAATTGAGATTTTGTTACAAACAGTGATATTA
GTACATCATTTAAAGCACTGATTTAGGCTTATATCAAAAGAGCAACAAAA
CGACACTTTTTTTCTTGTACTATCTATACTTAGTGATATTTGCTAATCTT
CTTTGTGACTTGATAAAATGATCTGCTCACGCATCCCAGCTGGCACAAAA
CGTTGTTTCAACGTTTAATTAACGTTATATTGACGTTATGAACATTAGAT
AAACGTTGAAACAACGTTGTGTGCTAGCTGGGATATTATGAAAAGTTCTT
CGTTAATTATTTAAAAGATTCATATAACCCAGACGGCACACACGTCAAAG
CAACGTCCATGTGACATTCACAACGTCCAAATAACGTTATTTTAACGTTA
AAACAACGTTGTGTTCCAGTTGGGAATAATTTTGAATTTTTATGGTAATT
TGAGAGAAAGCTGGATCTGATATTTGGTGAACATTCGTAGGATAGATATA
TAAGAAGTGGCTTTAAAAAGCTTGGGAATTCCAGACTATGACTGAAAGCT
TGAAAAATGGATTTCTTCAATAGGAAGCGAAAGTTATCATTTGGTAATAA
TAAATCAAAACAATCTGAAAATAAAGACAAGGTAAAGAGATAAGTTGGTG
ACTGGGGCGGTGAAAAGGGGTGGTGGGTGGGCGGCGATATACAAGGCGGG
TGAGAGGGTGGAACTGTATACACTGAAAAGCAGGCAAAAGGGTGCGGTGG
GCCGATACGTCCATACACCCTGCGCAATAACCTTGATCCTTCTCTTTATA
TTTTTGAGAAGAACGATATCAAATGCTTGGTCGTCAAAATGCTAAGTTAA
GTGACAATACACTTTTTCGACCGTAGTCGCGCGGTCAGGCGCGTACCACT
TTATTGTTAAATTTATACCACCCTAAACTCGATCCAATCCTTTTTTCTAC
ACTTTTTTCTATTGTATTTAGGTGCGAAAAAAGACTGGGACGGTTTTAGG
GTGGTAAAACGTACAAAAAATGCCAATTGGCAGCTACGGCCGAAAAGGTG
TACAGTGGAACCTCTAATTAGCGGACACCATCGAGGAAATGGGTTAGTGT
CCGCTAATTAAAGTCTATTCATGATAAGTGTGCACTCTTTTTTCTTTTAC
CTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTATCATTGA
AAAGATATTGAAATAACAATTTGGAATAAAAAAATCTTTAAAAAATTCTA
AAACTGAAGATGGAGATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAGG
TACTATAACTTTCATTTTCACTGGAGAGATTTTTTGATCTTAGGAGATCA
TCACTGTGAAGAAATTTCATTAAAATATTTATTCAATATAAAGCTATGAT
ACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAAAAAACTGCAGAAA
ACAGCGTTTTTAGACGTCAATCAGCCTATAACTTTGTTTGATATCTTTTG
ACTGAATGATTATTTTTCAGATTTTTTTTCACAGTGATGACGTTCGATGA
TCAAGGATTAACTTCAATGAAAATGATAGTTATAGCACTTTTCTACAAGA
TCTTCATTTTTTCTTCTTCATTTTCATCTTCATTTTTAGAATTTCTTTAA
AGATCTTTTTATTTCAAATTGTTCCACTCAGTAATATCTTTCCAATGATA
CCAAATTTATAAAGATTGAAGAATTCATTCAAAAGTTATAGGTAAAAGAA
AAAAGAGTGCACACTTATCGTGAATAGACTTTAGAAGTGTCCGCCTTTTA
GAAACTTTTGATCTCGGAGCTCCAATTTTGAAATTAGGCCATCCCAGGGT
GTCGAAAGTACAAAATTGGGGTCTAAAGTACTTATCTGCAGACACTAGGC
CATAGAAGAACAAGAGAAAGGTTATTAAAACGCAACAATTTAGTTTTTAA
CAAATAAAAGAAAAATCAGTGATTTTTGATTTCTTTGGCTCACCTAAATT
CGTTGAATGGGTCAAGGGGAAAACTGGAAATTTGTAGAAATAATTTGAAT
AATAAGACTAATAAGTGCTTGAAATAGAAATATCTAAAAACATTTCTTCG
ATTTTGGACGTCTGTCACCCGTTTGATATTCAATGTCCGCTAATTGGAGA
GCTAAAATAGGGATTTTGGCCATTTCGTGCGAAAAAATTTGTCCGCAAAT
CAGAGGGTCCGCTAATTGAGTGTCCGCCTTTTAGAAACTTTTTTATGAGG
ATTTGACTAGGAAACGGCCGGGGAAAATGAAATTGTCCACTAATCAGAGG
TGTCCGCCTTTTAGAGTGTCCGTTAATTAGAGGTTTTACTGTATGCGATT
GATGAATCAAATTTNACTAATCAGAGGTGACCGCCTTTTAGAGTGCCCGT
TAATTAGAGGTTTTACTGTATATAGTCGACTCAGCAGTTGAAAACATGTG
AAGTGTCATAGTGTTAGTTGATCTGTCAGTTTTAAAAGAATTCTTATTAA
TGAAACATTCTTTTATTATTATTCAGGGTTCAATCACGAAGGCGCGGGTC
GCGGTGTTCGGATGCGGACGAGTCGGAAAAACATCGATCATTAAACGATA
TTTATACGAAGAATTCGATCACAACTACTATGAAACAATCGAGGACATTC
ACAAAAAAGTTGTATTCTGTAATAACCAATCGATTGAATTAACAGTACTC
GATACAGCGGGTAATTATCAATTCCCAGCCATGCGTGAACTAGCGATAAA
ACAGAGTAACGGCTTTATACTTGTTTACGCCATTGACAATGTCCCTTCTT
TCGAAGAAGCGATTCGTTTACGAGATATTATTGTATCAGTTAAAAACAAT
GAAGATACCCCGATCCTATTAGTCGGTAATAAAACGGATGCAGGCTTTCG
GCGAGTACAAAGAGTCGAGGCTAGTGCCGCAATGAAAGATTGGGGCTCTA
AAGCACAACACATAGAGACATCAGCAAAAAATAATGAAAATATCGATTTA
CTTTTTAACAGTCTAATAGCAATGATTGACGAACAGAATAATGAGCAATT
AGAACTATCAACTTTTAAAGACGCAACTCGATATCGGTTCAGCAGTATGC
GACAATCTGTCCGTAACTCGACGAGGCGGGCGTCCGCTAAGACTTTATCA
TTCGTTCGCCGTGAGAAAAGTCAGACGCAACCAATGGTTAACGGCAGGAA
GACACTACAAAGTATTTCGTAGCATAAATCACAAAGACACGCGGAATACG
AATAAGATAGCGTGCCAGCAGATAGTCGTAAAGCCATAAAGACGATTTAT
TTCGCTGAGATTAATTGGGATATTCCATTTTATGTCCATACAGGTGGCTG
GACAAATATTTCCAGGGGTTGATTTATACAGAATATCCAGGAGGTCTAAA
AGAACGTGTTTTTT

Coding sequence (CDS) from alignment at scaffold_225:123566..131129-

>TCONS_00053069 ID=TCONS_00053069|Name=TCONS_00053069|organism=Clytia hemisphaerica|type=CDS|length=1614bp|location=Sequence derived from alignment at scaffold_225:123566..131129- (Clytia hemisphaerica)
GGTTCAATCACGAAGGCGCGGGTCGCGGTGTTCGGATGCGGACGAGTCGG
AAAAACATCGATCATTAAACGATATTTATACGAAGAATTCGATCACAACT
ACTATGAAACAATCGAGGACATTCACAAAAAAGTTGTATTCTGTAATAAC
CAATCGATTGAATTAACAGTACTCGATACAGCGGGTAATTATCAATTCCC
AGCCATGCGTGAACTAGCGATAAAACAGAGTAACGGCTTTATACTTGTTT
ACGCCATTGACAATGTCCCTTCTTTCGAAGAAGCGATTCGTTTACGAGAT
ATTATTGTATCAGTTAAAAACAATGAAGATACCCCGATCCTATTAGTCGG
TAATAAAACGGATGCAGGCTTTCGGCGAGTACAAAGAGTCGAGGCTAGTG
CCGCAATGAAAGATTGGGGCTCTAAAGCACAACACATAGAGACATCAGCA
AAAAATAATGAAAATATCGATTTACTTTTTAACAGTCTAATAGCAATGAT
TGACGAACAGAATAATGAGCAATTAGAACTATCAACTTTTAAAGACGCAA
CTCGATATCGGTTCAGCAGTATGCGACAATCTGTCCGTAACTCGACGAGG
CGGGCGTCCGCTAAGACTTTATCATTCGTTCGCCGTGAGAAAAGTCAGAC
GCAACCAATGGTTAACGGCAGGAAGACACTACAAAGTATTTCGTAGATGA
GCCAATCAATACCATACAGAAATTCAATCTCATATGAAAGCGAAAGGAAG
GAGCGTGAAAAGGAAGTCATGAGACAAATCAAAGAAAAGATCATTGCATC
ACGACAGGGTTCAATCACGAAGGCGCGGGTCGCGGTGTTCGGATGCGGAC
GAGTCGGAAAAACATCGATCATTAAACGATATTTATACGAAGAATTCGAT
CACAACTACTATGAAACAATCGAGGACATTCACAAAAAAGTTGTATTCTG
TAATAACCAATCGATTGAATTAACAGTACTCGATACAGCGGGTAATTATC
AATTCCCAGCCATGCGTGAACTAGCGATAAAACAGAGTAACGGCTTTATA
CTTGTTTACGCCATTGACAATGTCCCTTCTTTCGAAGAAGCGATTCGTTT
ACGAGATATTATTGTATCAGTTAAAAACAATGAAGATACCCCGATCCTAT
TAGTCGGTAATAAAACGGATGCAGGCTTTCGGCGAGTACAAAGAGTCGAG
GCTAGTGCCGCAATGAAAGATTGGGGCTCTAAAGCACAACACATAGAGAC
ATCAGCAAAAAATAATGAAAATATCGATTTACTTTTTAACAGTCTAATAG
CAATGATTGACGAACAGAATAATGAGCAATTAGAACTATCAACTTTTAAA
GACGCAACTCGATATCGGTTCAGCAGTATGCGACAATCTGTCCGTAACTC
GACGAGGCGGGCGTCCGCTAAGACTTTATCATTCGTTCGCCGTGAGAAAA
GTCAGACGCAACCAATGGTTAACGGCAGGAAGACACTACAAAGTATTTCG
TAGATGAGCCAATCAATACCATACAGAAATTCAATCTCATATGAAAGCGA
AAGGAAGGAGCGTGAAAAGGAAGTCATGAGACAAATCAAAGAAAAGATCA
TTGCATCACGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033517XLOC_033517Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053069-proteinTCONS_00053069-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053069-exon-scaffold_225-1575043694:130305..131129TCONS_00053069-exon-scaffold_225-1575043694:130305..131129Clytia hemisphaericaexon
TCONS_00053069-exon-scaffold_225-1575043694:123566..124453TCONS_00053069-exon-scaffold_225-1575043694:123566..124453Clytia hemisphaericaexon
TCONS_00053069-exon-scaffold_225-1510915933:130305..131129TCONS_00053069-exon-scaffold_225-1510915933:130305..131129Clytia hemisphaericaexon
TCONS_00053069-exon-scaffold_225-1510915933:123566..124453TCONS_00053069-exon-scaffold_225-1510915933:123566..124453Clytia hemisphaericaexon
TCONS_00053069-exon-scaffold_225-1491911889:130305..131129TCONS_00053069-exon-scaffold_225-1491911889:130305..131129Clytia hemisphaericaexon
TCONS_00053069-exon-scaffold_225-1491911889:123566..124453TCONS_00053069-exon-scaffold_225-1491911889:123566..124453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:123566..131129 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.11638	0.993721	0.197952	0.451946	0.0628386	0.140705	2.22125	3.37651	0.598728	1.51183	0.650744	0.906751	2.32662	3.13437	0.179905	0.640021	0.355578	0.173701	0.505337	0.893197	0.170094	0.363059	2.75367	2.31631
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00053069 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.768e-34
Identity = 68/162 (41.98%), Postives = 100/162 (61.73%), Query Frame = 1 
Query:  844 RVAVFGCGRVGKTSIIKRYLYEEFDHNYYETIEDIHKKVVFCNNQSIELTVLDTAGNYQFPAMRELAIKQSNGFILVYAIDNVPSFEEAIRLRDIIVSVKNN-EDTPILLVGNKTD-AGFRRVQRVEASAAMKDWGSKAQHIETSAKNNENIDLLFNSLIAM 1323
            RVAVFG G VGK+S++ R++   F  +Y  T+ED +++V+ C+     L + DT G++QFPAM+ L+I + + FILVY+I +  S EE   + + I  +K + E  PI+LVGNK D +  R VQ  EA A  + W  K   +ETSAK N N+  LF  L+ +
Sbjct:    9 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTW--KCAFMETSAKLNHNVKELFQELLNL 168
The following BLAST results are available for this feature:
BLAST of TCONS_00053069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA22.768e-3441.98GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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