TCONS_00053070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053070
Unique NameTCONS_00053070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053070 ID=TCONS_00053070|Name=TCONS_00053070|organism=Clytia hemisphaerica|type=transcript|length=1468bp
TTATGACAAaagaattttcatcaaaaaaagggGGAACAAAAAAATCAGAA
GGTTTAAAAAGCAGAACAGTTAAGGAACTATGATCGGTCAAATATAATTG
TTTGATTTAAACTTGTcagattttattttcttattactTTTAAATGTTAT
TGTTACTGGGCTTTGTATAGTCACCGTTTTAACTTTTGAAGAGGCAGCAT
TGACATTATGCGATAATAAGCTCATAGTACCACTTATAAAGCATATTATT
CGACGTAAATCTTGTTATAGTTAATGAGATATTTGCAAATCGGAGCTACA
CGTTTTTAAGAGAAGGGACTTGTTTTCTTGGAGAAAAAGattgattttgt
tttataaacCTGTTAGATAAATAAACATGAATGATTCAAGTTATGATAGT
GAATGCGCACGCATTAATCCGCGTCTAGAACGCGAGATACAAGATCGCGA
ACGAAGAATCCAAGAATTATTGAGAAAAGCTGCTGGAGTACCAGCTGGAA
TGGAAGACGACCCAGGGAATTTTGATATCTCTTTCGAATTTATTGATAAA
GCAAATTGCAATGGTCCAATCGTCAGCACCTCCAAGAAGATGGTATACCC
GAGTCACTCCAACAACCAAAAACCTCTTCCAAATCCTGAAGCTGTTACGT
TAGAAATTCAAGGGGATCGTCTCATCGAGAAAGATGACAGTCAAAAATAC
CTAGACGCAAATCGTAAACAACAAATCCCCGTCAAACTCAGTTCAGTCAA
AAGCCGGCGTACTCAAAACATCACTTTAGAGTTACGTTCATCAGGACCCT
TAATCGGCTCTAAATCAGCGACGTCATCGACTCATTCTATCGGCTCCAAA
ACACCAAGCTCATCGACTCATTCTATCGGCTCGGTAACAGCGGAGGCTCC
AAGTTTTAAAGTTAGTCCAATCACCTTAACTATAGACCATAATGGCAACG
AAGAGCTTCGGGAAACGGGAGACGGGCGTATCTCAGTCCGTGCGAAACCA
ATACCAACTACATCCCTGTAAAACTGGTGAAATATAAGTCATTTGGTAGT
TTGAGTAGAATCTTCAATTGTTGGTAATGGTTACGTAATATAAAACCGTG
GTTATAAGGATgatcttcaaaaaagaagaagataaaTGGACTTTGAAAAA
TGATTGTACGTTGCAAGTATTCATAAAATGCTCTTTAATGACTGCAGAGA
CCTAATTCACGAGGAACTTTTTGTTGTACGGAAGTTGGGGTAGAGCTCAG
AGCCGGTGATTTTGAAGCACTGGGGTGGAGTGCCGGtaacttttaaaaca
aaatggcggtGTTTTATGATAATTTGACTGGAAAGTAATAATCTCGTGTA
CCAGAATTTCATGCaatatttttgtaatataaTTTAATAGttcagtttgt
ttttatataaatagtttctcaaaaaaagtataaatttcaAAGATAATTTT
ACCTAGCACCTTTTTCTG
Run BLAST on NCBI

transcript from alignment at scaffold_225:139548..143922-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053070 ID=TCONS_00053070|Name=TCONS_00053070|organism=Clytia hemisphaerica|type=transcript|length=4375bp|location=Sequence derived from alignment at scaffold_225:139548..143922- (Clytia hemisphaerica)
TTATGACAAAAGAATTTTCATCAAAAAAAGGGGGAACAAAAAAATCAGAA
GGTTTAAAAAGCAGAACAGTTAAGGAACTATGATCGGTCAAATATAATTG
TTTGATTTAAACTTGTCAGATTTTATTTTCTTATTACTTTTAAATGTTAT
TGTTACTGGGCTTTGTATAGTCACCGTTTTAACTTTTGAAGAGGCAGCAT
TGACATTATGCGATAATAAGCTCATAGTACCACTTATAAAGCATATTATT
CGACGTAAATCTTGTTATAGTTAATGAGATATTTGCAAATCGGAGCTACA
CGTTTTTAAGAGAAGGGACTTGTTTTCTTGGAGAAAAAGATTGATTTTGT
TTTATAAACCTGTTAGATAAATAAACATGAATGATTCAAGTTATGATAGT
GAATGCGCACGCATTAATCCGCGTCTAGAACGCGAGATACAAGATCGCGA
ACGAAGAATCCAAGAATTATTGAGAAAAGCTGCTGGAGTACCAGCTGGAA
TGGAAGACGACCCAGGGAATTTTGATATCTCTTTCGAATTTATTGATAGT
AAGGAAAACTTAAGAACTAATTTTGTTGTTGTTTGTTGTTGTCTGAACTG
AACGACTGAACGCTTGCTGTGAGTCCATACAAAAAGCTGAAAGAAAGTTT
GGACTTTAAAATAGTTAATTTCATTGCTTCAAAGATTTTTGTGACAACGA
GTTTTCTAGATTTTAGGGTCCGAAATTTTCGAAACGGGGTACCTTTACCA
ATTGCTCAAGCCATATAAATCTTTTAATTCGCTCTCTCCTTTAAAGCTTA
ATTACTCAATTTGAAAAACAAACGAGTCTGGTTATACAGCAATCATGCTA
AAGAGTCTGATAATTAGCTCTCTTACTCTAATTAAAACAGACTAAGTTCG
GTATTAAAGCCGAGATTTATCATTTTTCATTGTGTTTTCTATGTTAATTA
GATTTCGGATTTTCTCTATGCTATTACTACTGTACACTCATTTTTGTAAC
AAGAACAAGTAAATTTTTGATTATCCTAGGCTGTTCTAACTTTTTTAAGC
TTAAAATTGTTCTTATTCTATTCTTATTTCAGAGGCAAATCTGAGGTATT
TCAGGTTTGAAAACCCATAATTTTACTTAAAATTCAGTCATTCCAGGCTT
ATTTTTTGGCACTTTTGAGCCAACTAATTCTTATAAAATTGTTCTAATAA
AGGAGAGTGTATTTTGATAGGAAGACACTTTATAACATAAGTGGGCTTTC
ACCATTAAAGTCATCGCTTCTTCTCATCTCCAACGAAGGAAAGTGTTTTT
GAAATCAATATGCAGTGTAACCAGGAAAAAAAGTGGATCAGATTTTATAT
AAATTATAATCCTCAAAAATTATTATCTCGCAGGAGTTTGAATAATTAAA
ACATTAACAAATATCTATGCTCCATCAATAGATATTCAATTGCCAAGGTA
TTTAGATCGGATATTTGAAAAAGAAATTGTTATTAAGGTCACCAAAACCC
TTTTAAGCTATGAGGATTTTCATACACACTCTGTAGATTAAAACTCTCTT
TCTAATACAGGTTATAATTGTAACAGCTGTTAAGCTTAAAATTCTAAAAT
TTCCGATTTACAGCCTTTTATCTATGTGACCTTCCGGACACCTCAAGGAA
AATTAATTAAGTTTTTACTTGTATGATAAAATCTATCCAATTTATATATT
TTACCTATAGTTTTCTATACCATCCCATATCCTCTTTATTTGAAAAAAAA
GAATCAGCCTCAAAAGTATATTTCAATCGAATTCAAAAAAATTTACTGAC
ACTTTGATTTTGGTGCTGTTAAAGTTTAGTCTAATTAATTTCACTGGGAA
CTCTTTTGGTTCAATATGTATAAGATGTCCTTGATTCATTCAATCACTTT
TAAAGGTATTTCTGTAAATTACAATCCAAATCTTAAAGCTTCTAGGAAAT
TTTGAGATGCTAATCGGTGAAAGTCTATAGTTTTACATTATGTTATTAAA
ACACAATCTTAGCCAATTGTTTTAGAAATAGACTTTTAATGTTAAAAACA
AATCTGGTTATTGGAAACTTTGTGTGGGAAAAACTAGAAGAAAATTTAAA
AAATCTTGCTTCCAAAATCTGATATTTGAAGTCTCCATTGACAGAGGTCT
GACCTTTCGGAAATAAATACTCACAAAATTTGAATATAAAATACTTTCGG
TTGTCAAAGTATTTGAAAATATTGATTTAGTAACTCGTTATCTCTCTTGG
CAACAGCCAAACCCAGACATTTAGGTATGCAGACTAGTAGTTAGTCCTTT
CAAATGACATCGAATATACTCGCTACTCGGCTGGGAGTATGAAGAGAAAC
GTTAGGGTATTTTCTGTAACTTTAGATTGCACTCTCTCGTTCCCTACAAT
AATTACAACAAGAAATAAGATTGTCCCCAGAGTGACAAGTAGTAGCAGAA
TAAAAAAGTGTCTTTTCTTCTTTTACTGACATCGCTCTGTATCGAGTGAG
TACTGTAAAAGACTGAAGAAATACTTACAATAACAAATCAATAACCTAAT
GCCGGGGGTTGGTTGAAAATCTCCTAAAAATAGTAGGATAAGATATAGAC
TAAAATAAGGCTATTTAGAGTAAAACGTTGCTTCTACTTACTTTTACTTA
CTTCTAGTAAGGTACAGGAGTGGCTAAATTAAAAAATTAACGATAGGGGG
AGTAAGATAAGAGCAGGCAGTAAAATATTTTCAAAGACAGAGGCAGAGGG
GTAGGAGTCATATCATTATATTTTCAAAGTAGATTATTCATGTGAATTAA
TATCATTGTAAAGTAACCTTTAAATGCATTACTGTAATCATTTTCCTGAC
CGCAAGTTTAAATCGATATCCAAAAACATCATGATTCGATCACAATATTG
TTTCAATAAAATGAGATTTTGTTCTTAAATCAGCATCATCATTTAATCTG
ATGATTGTTTCTTGATACCTCTAGCAATTTGAATATCTTAATCTTTAGAG
ACTCCTCTTTTAACGATTACTGTCATGATGACGTGATTGGAATAATTTCT
TTCGTGACTATGTACTTAAAGGAAGATGAGTAGTATAAACAAATTGTATC
AGACTGTTTTAGGTCCATCAGACTTTATATAATTTTGGAGCCTTAACTTT
TTAATTTTTATTTTTCTAAAAGTTTGAGGATACTCAGGCTAGCTTAGGAT
GTGCAATGGTTTCAGAAACTTCTATATAATCTCACTATGTAAATAAATAC
ACAAGGCGAAAAAAGTCAACAAATTCAATAAAATTTTATCCCCAAAGATT
GTTTCAACCATTATGACCAAAAACAGTAACAGTAACACAAGGGTATTCTC
TGGTCTACAATGTGATCAATACTACAAAAGCAAGTAGAGACTTTTTATAG
AAATTTGAAGTACATCAAAACCTTTAATCAAATTATATTTCTCGCTCTTA
TTCAGAAGCAAATTGCAATGGTCCAATCGTCAGCACCTCCAAGAAGATGG
TATACCCGAGTCACTCCAACAACCAAAAACCTCTTCCAAATCCTGAAGCT
GTTACGTTAGAAATTCAAGGGGATCGTCTCATCGAGAAAGATGACAGTCA
AAAATACCTAGACGCAAATCGTAAACAACAAATCCCCGTCAAACTCAGTT
CAGTCAAAAGCCGGCGTACTCAAAACATCACTTTAGAGTTACGTTCATCA
GGACCCTTAATCGGCTCTAAATCAGCGACGTCATCGACTCATTCTATCGG
CTCCAAAACACCAAGCTCATCGACTCATTCTATCGGCTCGGTAACAGCGG
AGGCTCCAAGTTTTAAAGTTAGTCCAATCACCTTAACTATAGACCATAAT
GGCAACGAAGAGCTTCGGGAAACGGGAGACGGGCGTATCTCAGTCCGTGC
GAAACCAATACCAACTACATCCCTGTAAAACTGGTGAAATATAAGTCATT
TGGTAGTTTGAGTAGAATCTTCAATTGTTGGTAATGGTTACGTAATATAA
AACCGTGGTTATAAGGATGATCTTCAAAAAAGAAGAAGATAAATGGACTT
TGAAAAATGATTGTACGTTGCAAGTATTCATAAAATGCTCTTTAATGACT
GCAGAGACCTAATTCACGAGGAACTTTTTGTTGTACGGAAGTTGGGGTAG
AGCTCAGAGCCGGTGATTTTGAAGCACTGGGGTGGAGTGCCGGTAACTTT
TAAAACAAAATGGCGGTGTTTTATGATAATTTGACTGGAAAGTAATAATC
TCGTGTACCAGAATTTCATGCAATATTTTTGTAATATAATTTAATAGTTC
AGTTTGTTTTTATATAAATAGTTTCTCAAAAAAAGTATAAATTTCAAAGA
TAATTTTACCTAGCACCTTTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033518XLOC_033518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053070-exon-scaffold_225-1575043694:143375..143922TCONS_00053070-exon-scaffold_225-1575043694:143375..143922Clytia hemisphaericaexon
TCONS_00053070-exon-scaffold_225-1575043694:139548..140467TCONS_00053070-exon-scaffold_225-1575043694:139548..140467Clytia hemisphaericaexon
TCONS_00053070-exon-scaffold_225-1510915933:143375..143922TCONS_00053070-exon-scaffold_225-1510915933:143375..143922Clytia hemisphaericaexon
TCONS_00053070-exon-scaffold_225-1510915933:139548..140467TCONS_00053070-exon-scaffold_225-1510915933:139548..140467Clytia hemisphaericaexon
TCONS_00053070-exon-scaffold_225-1491911889:143375..143922TCONS_00053070-exon-scaffold_225-1491911889:143375..143922Clytia hemisphaericaexon
TCONS_00053070-exon-scaffold_225-1491911889:139548..140467TCONS_00053070-exon-scaffold_225-1491911889:139548..140467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:139548..143922 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0193362	0.0638121	0.0936453	0.369086	0.442318	0.35633	0.455529	0.24948	0.100531	0.19454	0.00347442	8.77547	6.57194	0.677947	0.62247	19.8984	30.5845	12.8511	15.2356	29.1747	28.725	25.5425	31.2977	25.3685	31.5218	161.981	114.488	14.942	13.2041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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