TCONS_00053052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053052
Unique NameTCONS_00053052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053052 ID=TCONS_00053052|Name=TCONS_00053052|organism=Clytia hemisphaerica|type=transcript|length=1457bp
CCTGAAGTTTCAACAAGTTGGCCATCTGGCATCGACTCCACAACATTTTC
AACATCCATTGTGCAAACTTCTTCTTCTGGTTCACCTTGACTTCCTGATT
GCCCAAGAGTCAATAAACGTTGGATTCTTCTCTCGCGATCTTCTATTTCA
TCTCCGACTCGTGGATTAATTTCAGCGCATGCGCTATCATATTCATTCTC
AACTGTCGAAGATAGTTCTACTTCTGATTCACTTATTTTCAATGTAATTG
TCTCTGTTGTTTTTAGTTTTGGTTCTGCTTTTAAATCTTTGGTAAGTTCA
ATTTCATGGTCAAGAACTTCTTTAAAAGCAGCTCGTTTCTCATCATCGCT
AGAACTAGCATCAATAGGGTGCGCCTCTAGACCCTCTTCTGTAACAGGTG
AAATAGCCTCACCATCGACGTTACTCTTATTCAAATTCACTGTCTTTGAA
ATCTCTTCTATTCCTTCGTAAGCCTCTTGCAGCACATGGTTTGATGTCTC
ATCAGCATATTTCTCAACCGAATCATGACTTGTATTTAGTTCGTCAGCCT
CTTCAATAGTATCTTTATTTTGAGATAACGAATTTACTTTATGTTCAATA
CTCTTAATTTCCTCCTCTGTAAACTGGACGCTTTGTAAACGCAGTTGTCC
AACGCTATCAAAATTATGACTTTCATTGCTAATAGTGGATGCTCTTTCAC
TGTCTAAACCATCAAAGGAGGGCGTGGTTTCGTCGGAAGGAGCTAAGACG
GGGGTAATAACATCTTCTTGGGTAGCAGATGACTGTGAGACGGGTTTAGT
GCGTACTGAGATTTTAATCGGTTTGGACTGTGAGTCTTCTCTTTTGAGAG
ATGCTCCACCGCCGATGCGGATCGAGACGGATTGCTTCTTCTGCGGTTGA
GATTCTTCAATTGTCGTCGATACTAGAGCCGCATCTTTACTCATTTGCCG
TTTTAACGTGACTGTCGGATATGTGATTTTAGTCGGGGCGACCACCTCGT
TAGCTTCTAGTCCTTCTTCATCTAATCCATCAAACATGCTTTCGTCAAGT
TCTATTCCTGCTTCAACATCTTGTCGCTCCTTAGGGACAATAACATCATC
ATCGGTAACAATTTGTGTTTTCTTCTGGTAATGAATCTCAGTTGTTTGTA
TAGTGACACCCACCTTTTCGAACGATTCTTCAAGAGCCTGAAAATCCAAT
GCGGATTCAACATCTTCTTGGTGATGGATTTGAATCACTGCTTCATCGTT
TACTGGCGATTTTTGGCGATCTACAGATTGGTTTGATATGGCTTTCGCCA
TTTGTCTGATCTCAACATGTTCGATTGTTTGATTGGAGATTATTTTGGTC
ATCTGTTGAATGTTGCCATGTTCATCGACAGATGTATTGTTATTTTGGTC
AAATTCACCTTCTTTCTCGATTGCCAATAATTTATCAAGCAGACGTGAAT
CTTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_225:149984..151529+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053052 ID=TCONS_00053052|Name=TCONS_00053052|organism=Clytia hemisphaerica|type=transcript|length=1546bp|location=Sequence derived from alignment at scaffold_225:149984..151529+ (Clytia hemisphaerica)
CCTGAAGTTTCAACAAGTTGGCCATCTGGCATCGACTCCACAACATTTTC
AACATCCATTGTGCAAACTTCTTCTTCTGGTTCACCTTGACTTCCTGATT
GCCCAAGAGTCAATAAACGTTGGATTCTTCTCTCGCGATCTTCTATTTCA
TCTCCGACTCGTGGATTAATTTCAGCGCATGCGCTATCATATTCATTCTC
AACTGTCGAAGATAGTTCTACTTCTGATTCACTTATTTTCAATGTAATTG
TCTCTGTTGTTTTTAGTTTTGGTTCTGCTTTTAAATCTTTGGTAAGTTCA
ATTTCATGGTCAAGAACTTCTTTAAAAGCAGCTCGTTTCTCATCATCGCT
AGAACTAGCATCAATAGGGTGCGCCTCTAGACCCTCTTCTGTAACAGGTG
AAATAGCCTCACCATCGACGTTACTCTTATTCAAATTCACTGTCTTTGAA
ATCTCTTCTATTCCTTCGTAAGCCTCTTGCAGCACATNGAAATAGCCTCA
CCATCGACGTTACTCTTATTCAAATTCACTGTCTTTGAAATCTCTTCTAT
TCCTTCGTAAGCGTCTTGCAGCACATGGTTTGATGTCTCATCAGCATATT
TCTCAACCGAATCATGACTTGTATTTAGTTCGTCAGCCTCTTCAATAGTA
TCTTTATTTTGAGATAACGAATTTACTTTATGTTCAATACTCTTAATTTC
CTCCTCTGTAAACTGGACGCTTTGTAAACGCAGTTGTCCAACGCTATCAA
AATTATGACTTTCATTGCTAATAGTGGATGCTCTTTCACTGTCTAAACCA
TCAAAGGAGGGCGTGGTTTCGTCGGAAGGAGCTAAGACGGGGGTAATAAC
ATCTTCTTGGGTAGCAGATGACTGTGAGACGGGTTTAGTGCGTACTGAGA
TTTTAATCGGTTTGGACTGTGAGTCTTCTCTTTTGAGAGATGCTCCACCG
CCGATGCGGATCGAGACGGATTGCTTCTTCTGCGGTTGAGATTCTTCAAT
TGTCGTCGATACTAGAGCCGCATCTTTACTCATTTGCCGTTTTAACGTGA
CTGTCGGATATGTGATTTTAGTCGGGGCGACCACCTCGTTAGCTTCTAGT
CCTTCTTCATCTAATCCATCAAACATGCTTTCGTCAAGTTCTATTCCTGC
TTCAACATCTTGTCGCTCCTTAGGGACAATAACATCATCATCGGTAACAA
TTTGTGTTTTCTTCTGGTAATGAATCTCAGTTGTTTGTATAGTGACACCC
ACCTTTTCGAACGATTCTTCAAGAGCCTGAAAATCCAATGCGGATTCAAC
ATCTTCTTGGTGATGGATTTGAATCACTGCTTCATCGTTTACTGGCGATT
TTTGGCGATCTACAGATTGGTTTGATATGGCTTTCGCCATTTGTCTGATC
TCAACATGTTCGATTGTTTGATTGGAGATTATTTTGGTCATCTGTTGAAT
GTTGCCATGTTCATCGACAGATGTATTGTTATTTTGGTCAAATTCACCTT
CTTTCTCGATTGCCAATAATTTATCAAGCAGACGTGAATCTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033509XLOC_033509Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053052-exon-scaffold_225-1491911889:149984..150468TCONS_00053052-exon-scaffold_225-1491911889:149984..150468Clytia hemisphaericaexon
TCONS_00053052-exon-scaffold_225-1510915933:149984..150468TCONS_00053052-exon-scaffold_225-1510915933:149984..150468Clytia hemisphaericaexon
TCONS_00053052-exon-scaffold_225-1575043694:149984..150468TCONS_00053052-exon-scaffold_225-1575043694:149984..150468Clytia hemisphaericaexon
TCONS_00053052-exon-scaffold_225-1491911889:150558..151529TCONS_00053052-exon-scaffold_225-1491911889:150558..151529Clytia hemisphaericaexon
TCONS_00053052-exon-scaffold_225-1510915933:150558..151529TCONS_00053052-exon-scaffold_225-1510915933:150558..151529Clytia hemisphaericaexon
TCONS_00053052-exon-scaffold_225-1575043694:150558..151529TCONS_00053052-exon-scaffold_225-1575043694:150558..151529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:149984..151529 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.312736	0.18494	0.153451	0.0608442	0.215307	0	0	6.54201	3.52746	0	0	6.5424	4.60443	10.2363	9.42127	9.96029	11.052	4.13093	5.8585	5.40987	5.66281	9.72649	5.8302	0.104355	0.0532539
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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