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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053106 ID=TCONS_00053106|Name=TCONS_00053106|organism=Clytia hemisphaerica|type=transcript|length=1626bp
GTTGTGAGGTGGAAGACTTAGTTCTTTTGGAAGACAATTTGTCAAAGGTT
GTAGAAGGACTGTCGAGATAATCAGAAATGGAGCGAGTTATTATTTTCTT
GGCTTTAATTGGTCTTGCATCTTCTATGTCAATCAAATTCAATCCATGCG
AGAGTTCAAGAGGTAAGTCAACAGCAAGCAACATCTCACTCATTATCGAA
CCATGCACGGCTGAACCATGTAAATTAATCAAAGGACAATCTTCAAGTAT
CGCTGTACACTTCACACCTGCAAATGTTGCTAAAACATTAGCCGTATCTG
TTCACGCTAAAATCGCTTCTTTCTGGGTTCCCTACAGTATTGATAAACCA
GACGCATGTAAGGATTCAGGCTTGACTTGTCCATTGGCTGCTGGAACAGA
GGCTGATTATGAATACTCATTGAAAGTCTCCACAGCCTACCCAAGTATCT
CCTTACCATTGGAATGGAAAATTACGGACGATACCGGAGCATCACCCGTC
TGCGTTGTCTTCCCTATCGTGGTCACATCCTCTGCTGCGTCCATGTACGA
AGAAGAATCTCTCGCACTCATTCCCTAGATAATTGTTTTATAATAgaaaa
tacagttgacactctctaattcaacGTTTTACTATTCGATATGCCCCAAA
AATATGCTCTCTTATTTaataatattgaaagccaccgtcaacaagaaact
ctgaTAACGACGCACACATCCTCTTCTGCGTCCATGTATGAAGAAGAATC
TCTCGCACTCATTCCCTATATAATGTTTCTATCATAgaaaatacagttga
cactctctaattcaacGTTTTACTATTCGATATGCCTtaaaaatatggta
taatatcagggttggtcaaatcaaatttttcagaaaatgagcaagAATGC
TAAGCAATCCCAGGGCGGACCCAAAAATTGTGTTGtcaataatattgaaa
gtcaatGTTGACAATAAACtttcataaacgacgctctactattcaatacg
ctctcttattcgataatattgaagtCACCGTCAATAAGAAACTCTGATAA
CAACGCTCTTCCACTCGATGAAAACCTAATCCCCATTGAAAATCGGATTA
GAGAACGTCAACTGCACTTTTACTTAACTCTTTCATTGTATCAACTTTAC
TTACTATTAATGAATCAAGCCATGGCTTAATGAGGTAGTACAGTATAATG
TATCgagaacttttttcatattttccaatagtttataatttttgtacaat
ttttacGAACTAGCAATAAAAACGATAATATAATgtacaatttttaaata
cttcaatggaaagaaaaatttcttcatcAATAGACTGGCACTCCAGTCGG
GCTAGAatggtatcacgcgggaaaagtgagcgtaggagttaggtaaacGT
AAGAAGTAATTTTGTCGGAAAgctaatcagcagcctctcgccaacttttg
ctcgttctccaacgcagctcctattctaacaaacgcccgccgcctttatg
ttcccgccctctgacatgattaattaacagactagttttcTAGTCTATGT
CTTCAATGGTAATCTTCAATGGCAAATAATTGGACAATTCTCAGTTCCAC
ATCCaaagtcaaattttcaattacCC Run BLAST on NCBI transcript from alignment at scaffold_226:128132..135034+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053106 ID=TCONS_00053106|Name=TCONS_00053106|organism=Clytia hemisphaerica|type=transcript|length=6903bp|location=Sequence derived from alignment at scaffold_226:128132..135034+ (Clytia hemisphaerica)
GTTGTGAGGTGGAAGACTTAGTTCTTTTGGAAGACAATTTGTCAAAGGTT
GTAGAAGGACTGTCGAGATAATCAGAAATGGAGCGAGTTATTATTTTCTT
GGCTTTAATTGGTCTTGCATCTTCTATGTCAATCAAATTCAATCCATGCG
AGAGTTCAAGAGGTGAGCATAACATTTTGACTATTTTGTTTAGCCTTtaa
cattagttttttctatcatttttctgcgggaaatcttttttatttttggc
ccAGAATCAAACCAGACATTTCTATCAAAACAGCAATTGTACCTTATACG
ATTTGCTATACAACCCTGCGTCACAGACcagctgggaccccagccccact
gggaaatttggcaaaaagttcgtacccggtgggaaaataccttagaaTTT
CGTTCAAttcctaacatgttcttattttcaccattttgtgagtatttttg
tccccTTTTCCTAAAAAATCCAGTATTTTAGaatcaaaaccttaaaatgt
tcctaacttgttcttaacattttagccatcgaagccttatgttcttatat
agttcgtTCTTCTAAAAACGTGTAATAATGATGACGAACGAAGAAACTGC
TTTGAGAAGGTCTATCAAGATTTTGATCTACTATTAAATCATTATAAGTC
CAAATATTTAAAGGTTAACTAACTTTCAGTCGATCTTATCTCTGAAAACT
GAGACTTTGAAAACTTCTTAACTTTATTAAAGTTTACATATAAAGTAATT
GAAGTGTCAACTTTATTGTATGTCGTCACATCacacgttttttcttataa
gaacaaactatataagaacatacggcttcggtggccaaaatcttaagaac
aagtcaagaacattataaggctttgtgtactcaaaaacaccctatttctt
aggaaaatggtcaaaagtatccacaaaatggtcaagataaaagcatgtta
agaacatccgaaggtttcaaaaattttggatattcatataaaaataaaag
cGTGTATCTTATAAATATGCAAAATCTATCagtgaaagtaaacaaagttt
tTCATTGTTACTTCCTTCTTTAAATtcaaataaaccagccgaggctagaa
ggtcagccaatagagcttagctagatagctttaataagtgggttaacaga
tgtaagagatgtactgaaacagagtagaccaaaaatgttgaataatgtNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNgtaaaaactgactgctattcagtcaaagcca
taatttggcaaggtcagaaaaacataatttacatccagtcttcgtaaata
aattttgtagtttagtaccgtcaaattacacaacatgcacacaaccatct
tgaagactttgctgatcgcaaatgataatcgaaagcaaaatttaaaatac
atAACTATtcagggaagctcatttttcccccattttgctttaaactccct
tttgattggtctatgaatttgggcgatcgctttaccgccttgaCAGAATA
AACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtgccaagca
ctggcagtgttttttaaactttaaaacaatgttaaatgaagaccagatgg
atatgtttgttatgactgtgcagGTTGTGACgtgagtgtgcatgttgtgt
aactcaAGTGATGTATGTATCAGTGCaatgtatttaaattttaagtttcg
tgacgtaatgttacgtaatgtttatgacgtcataatacaggtttttgggc
tataacttcttatagcctcaagttaaatttttctaacacccatcacgttg
atctacatcatatggcgcttctttccagctatgtttgaaaatttgaaagg
gagtggaactggttcacttttaccttagacatgccgtaactcacttgaga
acttgacggtataattcattaaattctagaaaccatttttcataactttc
tgcagtccactttctgcaagtctgataagagatatgtataaaaagttatc
gccattcattccattccatcattcagtcaaaacgtgcgccaaggttacaa
aaggttagaaaaacacaatctgcgtccggaactgcgtgaaaaatagttag
atcaatttcaacaagcaGACAAGAACTGCAACAtacattaatattaatat
aattgatcaaatttcaaagaccatttgtcataattttgcaagtccaataa
taggagatgtgatgtcatcatttggttcccgtcctgtcccgtcatctgac
cgaccctgatttacggtcagcaggtagagttggagagtcggaaagctttt
ccgctgctttgctggatttccaatgtcgacctctgcacgctctgtgttta
caagtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgct
ctgtgtttacaagttttcaaatcgaagtagcgagccgcatgctaatggag
agtaaaccgaaaaccagtttatccacggtttctcaatttcttaattcgga
taagtccacacggattccctttcaacaagatgtatagctgcttcttaaaa
gaaaaatattttcgaccgatcgaccgaccgaccgaccgaatgacccccac
tttaaaaaaaaaatgacgggaatcaaataattttttgcgattcgccttat
caaacacttccaaaccaagtccaaaaaagcacgattgcatccaggctcta
tcaaatttagacagtagctgtacttttgtaaactttatcaaattccaata
acattataacaccatcaatcccacctagaggaaacaagaaaaatatgttt
ttattgcaaaaactaataaaaagcagcaataaaatgtatcagaaaattta
acataaacaaaaacttgagcaaacggctttaaaccttcaaaagatgtaga
aaaagaatccccttgatgaaaatcatgtgtttgatttgccNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTACCAAAGCAAGATCTATAAAAACTTTTCAATCTAAT
TTGCAGGTAAGTCAACAGCAAGCAACATCTCACTCATTATCGAACCATGC
ACGGCTGAACCATGTAAATTAATCAAAGGACAATCTTCAAGTATCGCTGT
ACACTTCACACCTGCAAATGTTGCTAAAACATTAGCCGTATCTGTTCACG
CTAAAATCGCTTCTTTCTGGGTTCCCTACAGTATTGATAAACCAGACGCA
TGTAAGGATTCAGGCTTGACTTGTCCATTGGCTGCTGGAACAGAGGCTGA
TTATGAATACTCATTGAAAGTCTCCACAGCCTACCCAAGTGTAAGTTTGA
TTCAAAAATATCATATTCCTTTACACACTATATAGGTATGTTAACTGCTC
ACAGACTGTGCTTTCCCGTGAAAGTCCAAATTAAAAGTCGACTAGTCCGC
CATGCTGTTCCTTGTTTCATTAGATTTTCGagctttcaaatttcaaaaaa
ttcgaaTGATCTCACTGTTGACAAACAGAACAGAATACAAATTAAAAGAG
GAATTaaaagagggatgtcgacattagaccaacttaccaTAGCTAATAGA
GAAAGAGTATTTCAcggtcaaaaaaatttgaaacgaTTGcatcgcgggaa
ttaatttttgcggtNCGTGGAAAATTTTatctatttgaatgctcagctta
ggctgaccaaaaagctatctaaaaaattgaaaaatttgaaaaatcgcACG
CCTAGTATTGATTCGTTTTTTGCGCGCACTTGTGAATGGAAAAAGAGTGA
ATAAGTCATGCCCCGTACctcatttttgcctaagttcAACAACAAAGTAC
AACACGGGCGTGGCCGGGCCGGATAGGGTTTTATGTTATAGTAACTACCT
CCATTTTTGATTATAGTTTAAACCTCCACAATACTCTATAGAGCCTTCCG
AGAAAAAATTGACCAAGGGAACTCGGAAAATAACATGCTTAAAAGCCTTG
AGCTGTCTATTGTATAGAGATACCAAAGCAAGATCTATAAAAACTTTTCA
ATCTAATTTGCAGGTAAGTCAACAGCAAGCAACATCTCACTCATTATCGA
ACCATGCACGGCTGAACCATGTAAATTAATCAAAGGACAATCTTCAAGTA
TCGCTGTACACTTCACACCTGCAAATGTTGCTAAAACATTAGCCGTATCT
GTTCACGCTAAAATCGCTTCTTTCTGGGTTCCCTACAGTATTGATAAACC
AGACGCATGTAAGGATTCAGGCTTGACTTGTCCATTGGCTGCTGGAACAG
AGGCTGATTATGAATACTCATTGAAAGTCTCCACAGCCTACCCAAGTGTA
AGTTTGATTCAAAAATATCATATTCCTTTACACACTATATAGGTATGTTA
ACTGCTCACAGACTGTGCTTTCCCGTGAAAGTCCAAATTAAAAGTCGACT
AGTCCGCCATGCTGTTCCTTGTTTCATTAGATTTTCGagctttcaaattt
caaaaaattcgaaTGATCTCACTGTTGACAAACAGAACAGAATACAAATT
AAAAGAGGAATTaaaagagggatgtcgacattagaccaacttaccaTAGC
TAATAGAGAAAGAGTATTTCAcggtcaaaaaaatttgaaacgaTTGcatc
gcgggaattaatttttgcggttttgtcCTATTTTGGAAACATTTCTTTCA
TGTcagattcttcaaatttctttatGAATGGtgtcaaaacttgtaatttG
CAGGTTCTAAAAATTAGTTCACTTAAGTTATTATGCATCACATTTAACTT
TCTACAATTTATATTTCATATAGATCTCCTTACCATTGGAATGGAAAATT
ACGGACGATACCGGAGCATCACCCGTCTGCGTTGTCTTCCCTATCGTGGT
CACATCCTCTGCTGCGTCCATGTACGAAGAAGAATCTCTCGCACTCATTC
CCTAGATAATTGTTTTATAATAgaaaatacagttgacactctctaattca
acGTTTTACTATTCGATATGCCCCAAAAATATGCTCTCTTATTTaataat
attgaaagccaccgtcaacaagaaactctgaTAACGACGCACACATCCTC
TTCTGCGTCCATGTATGAAGAAGAATCTCTCGCACTCATTCCCTATATAA
TGTTTCTATCATAgaaaatacagttgacactctctaattcaacGTTTTAC
TATTCGATATGCCTtaaaaatatggtataatatcagggttggtcaaatca
aatttttcagaaaatgagcaagAATGCTAAGCAATCCCAGGGCGGACCCA
AAAATTGTGTTGtcaataatattgaaagtcaatGTTGACAATAAACtttc
ataaacgacgctctactattcaatacgctctcttattcgataatattgaa
gtCACCGTCAATAAGAAACTCTGATAACAACGCTCTTCCACTCGATGAAA
ACCTAATCCCCATTGAAAATCGGATTAGAGAACGTCAACTGCACTTTTAC
TTAACTCTTTCATTGTATCAACTTTACTTACTATTAATGAATCAAGCCAT
GGCTTAATGAGGTAGTACAGTATAATGTATCgagaacttttttcatattt
tccaatagtttataatttttgtacaatttttacGAACTAGCAATAAAAAC
GATAATATAATgtacaatttttaaatacttcaatggaaagaaaaatttct
tcatcAATAGACTGGCACTCCAGTCGGGCTAGAatggtatcacgcgggaa
aagtgagcgtaggagttaggtaaacGTAAGAAGTAATTTTGTCGGAAAgc
taatcagcagcctctcgccaacttttgctcgttctccaacgcagctccta
ttctaacaaacgcccgccgcctttatgttcccgccctctgacatgattaa
ttaacagactagttttcTAGTCTATGTCTTCAATGGTAATCTTCAATGGC
AAATAATTGGACAATTCTCAGTTCCACATCCaaagtcaaattttcaatta
cCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053106-exon-scaffold_226-1491911889:128132..128293 | TCONS_00053106-exon-scaffold_226-1491911889:128132..128293 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1510915933:128132..128293 | TCONS_00053106-exon-scaffold_226-1510915933:128132..128293 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1575043694:128132..128293 | TCONS_00053106-exon-scaffold_226-1575043694:128132..128293 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1491911889:132088..132326 | TCONS_00053106-exon-scaffold_226-1491911889:132088..132326 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1510915933:132088..132326 | TCONS_00053106-exon-scaffold_226-1510915933:132088..132326 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1575043694:132088..132326 | TCONS_00053106-exon-scaffold_226-1575043694:132088..132326 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1491911889:133334..133378 | TCONS_00053106-exon-scaffold_226-1491911889:133334..133378 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1510915933:133334..133378 | TCONS_00053106-exon-scaffold_226-1510915933:133334..133378 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1575043694:133334..133378 | TCONS_00053106-exon-scaffold_226-1575043694:133334..133378 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1491911889:133855..135034 | TCONS_00053106-exon-scaffold_226-1491911889:133855..135034 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1510915933:133855..135034 | TCONS_00053106-exon-scaffold_226-1510915933:133855..135034 | Clytia hemisphaerica | exon |
| TCONS_00053106-exon-scaffold_226-1575043694:133855..135034 | TCONS_00053106-exon-scaffold_226-1575043694:133855..135034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:128132..135034 + |
Blast
BLAST of TCONS_00053106 vs. Swiss-Prot (Human)
Match: NPC2 (Epididymal secretory protein E1 OS=Homo sapiens GN=NPC2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 9.269e-20 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3
Query: 117 ASSMSIKFNPCESSRGKSTASNISLIIEPCTAEPCKLIKGQSSSIAVHFTPANVAKTLAVSVHAKIASFWVPYSIDKPDACKDSGLTCPLAAGTEADYEYSLKVSTAYPSISLPLEWKITDDTGASPVCVVFPIVVTS 530
A + ++F C S G N+S PC +PC+L KGQS S+ V FT +K+ VH + VP+ I +PD CK SG+ CP+ Y L V + YPSI L +EW++ DD S C P+ + S
Sbjct: 17 AQAEPVQFKDCGSVDGVIKEVNVS----PCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFCWEIPVQIVS 149
The following BLAST results are available for this feature:
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