|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053107 ID=TCONS_00053107|Name=TCONS_00053107|organism=Clytia hemisphaerica|type=transcript|length=324bp
ttcagccaatcagagactttctcgacgtttttcgtgacttttttacatga
atccgctAATAGGAAACACGTGTATTCAAATCGAATGAGTTGCGAAGAAG
GAAGGCGGCAATGGCGATGAGAGGAGAATTTGGCACGCCCAATTAAAAGA
GagatTACTATTGTTTTTATACTACTGACACATACAATAAATTGTAACCA
TGGGGAAGAtgctatcaaaaatctttggtAACAAAGAGATGAGGATATTG
ATGCTTGGTCTCGATGCTGCAGGAAAAACTACTATATTATACAAATTGAA
ATTGGGACAGTCAGTGACAACNAC Run BLAST on NCBI transcript from alignment at scaffold_226:157661..166325+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053107 ID=TCONS_00053107|Name=TCONS_00053107|organism=Clytia hemisphaerica|type=transcript|length=8665bp|location=Sequence derived from alignment at scaffold_226:157661..166325+ (Clytia hemisphaerica)
ttcagccaatcagagactttctcgacgtttttcgtgacttttttacatga
atccgctAATAGGAAACACGTGTATTCAAATCGAATGAGTTGCGAAGAAG
GAAGGCGGCAATGGCGATGAGAGGAGAATTTGGCACGCCCAATTAAAAGA
GGTATTTTTATCATGTAATTTGTtgagttttgacttttttcttatttacg
ATGTTTTTGCAGTACgtgtaatttttatttttcacttttcattgagattt
tctttcattttgagGTAATTCTTTGGTGACTCAAAGTTCTTGCCCCATAC
CATTTGCATTGCCAGTCTGTATCAGTTTTTTGATACACCATTTTAACTTT
CCCTCTTATATGATTTCGTGAAACAACTGTTCACAAGCAATGCCTAACAG
TTCGCAAACAATCAATAGGAATTCTAGGCCCACATCATGATCTAAAAGGA
AACTCTTGCCTTGGCATGGCGGTGCACTAAACTGTGTTTTGGTTGGAAAC
TCTCTCTCTGTTTGACTTTTGAGTCACTGAGTGGGAAAGCCTAAGTTATA
ACCCCCAAAGTGTGATtccacttttttcttttttaattcgCTATCCTTCC
TTGTAGTACCCTAGCTTTGATAAATGTCGACATACCTTGTTGTCAAGTAG
TATCTGGTATGATGCAAAGTACTAGAAGACCCTGTCGACGCActggactg
tccggtgtatttgtccggtggcaaaaagtatcctttcgctacaccggatg
CAATaagttgcatacagggaattttggacgccggacatttatgaaacaaa
aaattaagaaacataggacgcaccggactggtcatgtccggtgttttgat
tgtccggtgggaaaaaatatccttctccgacaccggacatccgactccct
taagtccggtgtagaaattgtccggtggtaaaaaaaatactcattttaca
ccggactttcgtgtgtccggtgttcgttaagtccggtgcgtcggcagggt
cctagtACTAGCACtacaggccatattttagaaaggcaaggcagcgttcg
ttggtggccaaaaagggcactttttcttatgtttttccactaaaaaggct
gtttttaacaaaattttagtaatttcaagagGGGCAGCGTCCAATAACCG
GACgcttaaagggcatgaaaaatggcctgcaCTAGTAGGttgagtgattt
ttttaaacagcttatTCAGAATGTTTTATAAACATTTCaaagaccagata
gttgctttgatggaattagacaaggtacGTCGGCATCACACAAAGTTACA
GACATATCTATTTGGGGAGGACCCTCCCGGCCCTCCGGGAAACTTCCGGT
GCTTCCGGAGCGAGTGATTCTTAACACAGTTCCAGAGTTCCGGTGCAGAC
CAATTGCCGAAAATCATGCTCTGGAACACCAGAAGTGCTTGGAGCACAAA
AAACAGCACTTTTTGCTCCAGACGTTTCCAGAGCGCCAAGAGGGTCCTAT
TTAGGGACGTACAGCAGGATATCGATACATCAGTATTGACCTTTTTTAGA
TCAGTATATACATCAGTatagggagaaaaaaaatccgtaaTTGGTATTTC
TGGAGCATCACTGTATTGGTAAAAGACCCTTTTTATGTCagtatttcaat
atttttggtcaGCTATCAGTATCATGTGGAATTATTCAAGAAATCAAGTT
ttcatcattgaaatttttaaaagaaacaaGGGGAAGGGAGTCTAAGAAAT
CTGAATATAAATGTTggttcaaaatattgaaatcgaTCAGTAttggtacc
gtcaactgctccaactggggacgagtgtacgcaacatgggacttgttgat
atatatatatggcctgtattttcacttaagggggtagtcatatgagattt
tgaaaattggtgaaaaatttatcaatNggcctgtattttcacttaagggg
gtagtcatatgagattttgaaaattggtgaaaaatttatcaatttcggga
tttaaggctttttagtatcctttatccTTTCTGAacataccctgaaaatt
tcaaggccgtagcATAAATATCTGCCGATATATTGGGTTTCTTATGAGAC
CTGGTTTACAATTTTCTCCTTAGCAACGGGAAATCGCATCCGTTGCTAGG
GCCTCATTTCCGTATGGCTGCTCTAAACATAGCATCATGACATANttgtt
gaaatggtcaaacaccggaccccacgggttgagtgagcagagaatttgct
gaaacacatcaaaggtaatcaaaggtAGGTAATGATCCCAACCTTGCTAT
TATTCCCATCgctaaaaagggtgtcgaaattagaagagggatgtcgacat
tagacagTCAGGGACAGTCGCCTTNTCTTTTTGAGacgcttttgttcaga
agacaatttcttacttctgattggttcttatggattattagaattgtgat
tgattccaccggtggatttttctgaaaatcaccatatatggaatcaattt
tttgtgctctttccattgGGAGCAATCAAATCATGCGCAGTTTGCTCGTT
CACAAGATAATTATacccgtctcctgattaggagacgtgaacctcctgat
taggagacgggtcccTGACTGTTAGACCAACTTCTTACGGTACCAAACTA
TTTTAAACTCAATTACCAAACAcaaacaaaataccaaaatgtacaaagaa
aaatttcttagttCTTNTAGCCCCCCCCCCAAGAGCCAGGGGGGTTGCAT
TCCATATGACCCCCCTACTTCAGTTTTTTGGATGGTGTCATCCTCCCTTA
AAATACCCCCCTTCTTCAAAGTAGACTAGACAGGAGAATTCATTTCACAT
GATGGATCTCCAGCCAGGCTAGATCCAAGAAAATATGAAGAATGAAAATG
TGTCAGAGGGGTTGGAACTGTCTTTCGCCCTAAGTTAGTCTGTTACTAGC
CCAAAGAAAGTGAAATAAACTGCTTCATAAAATTTCAGTGTACTAGCTGA
GGCAACTTTCAGTCCAATGTtcactttccaacagaaaaagTTGGTTTGTT
TGTTTGGTTTTATATACCTGCAAGCTAGCGTCCAAAAATGACAGGTCGAT
GCTCATGCTTTTTACATGTGTCGGGCGGTATAAGAAATTGTGAAATCGAA
CAGAGATATCTCACTTGCTTTGAAAGGGCGCTTTTTACTTGTTTTGGCTA
TTTGTCTCTACTAAACTCACTTGTCTTCCCGTTCGATCATTAGAATTGAA
AATGAACAAGCGAGTCTTTGCTTGGCAATTTGTTAACTTACCGCTGACCA
GACGCGAAATTTCATCGCGGATTCCTTAAATTCAAATCGAATGAGTTGCG
AAGAAGGAAGGCGGCAATGGCGATGAGAGGAGAATTTGGCACGCCCAATT
AAAAGAGGTATTTTTATCATGTAATTTGTtgagttttgacttttttctta
tttacgATGTTTTTGCAGTACGtgtattctttatttttcacttttcattg
agattttctttcattttgagGTAATTCTTTGGTGACTCAAAGTTCTTGCC
CCATGCCATTTGCATTGCCAGTCNTGAGGTAATTCTTTGGTGACTCAAAG
TTCTTGCCCCATACCATTTGCATTGCCAGTCTGTATCAGTTTTTTGATAC
ACCATTTTAACTTTCCCTCTTATATGATTTCGTGAAACAACTGTTCACAA
GCAATGCCTAACAGTTCGCAAATAATCAATAGGAATTCTAGGCCCACATC
ATGATCTAAAAGGAAACTCTTGCCTTGGCATGGCGGTGCACTAAACTGTG
TTTCGGTTGGAAACTCTCTCTCTGTTTGACTTTTGAGTCACTGAGTGGGA
AAGCCTAAGTTATAACCCCCAAAGTGTGATtccacttttttcttttttaa
ttcgCTATCCTTCCTTGTAGTACCCTAGCTTTGATAAATGTCGACATACC
TTGTTGTCAAGTAGTATCTGGTATGATGCAAAGTACTAGAAGACCCTGTC
GACGCActggactgtccggtgtatttgtccggtggcaaaaagtatccttt
cgctacaccggatgCAATAaatccggtgttgcatacagggaattttggac
gccggacatttatgaaacaaaaaattaagaaacataggacgcaccggact
ggtcatgtccggtgttttgattgtccggtgggaaaaaatatccttctccg
acaccggacatccgactcccttaagtccggtgtagaaattgtccagtggt
aaaaaaaattctcattttacaccggactttcgtgtgtccggtgttcgtta
agtccggtgcgtcggcagggtcctagtACTAGCACtacaggccatatttt
agaaaggcaaggcagcgttcgttggtggccaaaaagggcactttttctta
tgtttttccactaaaaaggctgtttttaacaaaattttagtaatttcaag
agGGGCAGCGTCCAATAACCGGACgcttaaagggcatgaaaaatggcctg
caCTAGTAGGTTGAGTGATTTTTTTAACCAGCTTATTCAGAATGTTTTAT
AAACATTTCaaagaccagatagttgctttgaaggaattagacaaggtacG
TCGGCATCACACAAAGTTACAGACATATCTATTTGGGGAGGACCCTCCCG
GCCCTCCGGGAAACTTCCGGTGCTTCCGGAGCGAGTGATTCTTAACACAG
TTCCAGAGTTCCGGTGCAGACCAATTGCCGAAAATCGTGCTCTGGAACAC
CAGAAGTGCTTGGAGCACAAAAAAACAGCACTTTTTGCTCCAGACGTTTC
CAGAGCGCCGAGAGGGTCCTATTTAGGGACGTACAGCAGGATATCGATAC
ATCAGTATTGACCTTTTTTAGATCAGTACATCAGTATAgggagaaaaaaa
tccgtaATTGGTATTTCTGGAGCATCACTGTATTGGTAAAAGACCCTTTT
TATGTCagtatttcaatatttttggtcaGCTATCAGTATCATGTGGAATT
ATTCAAGAAATCAAGTTttcatcattgaaatttttaaaagaaacaaGGGG
AAGGGAGTCTAAGAAATCTGAATATAAATGTTggttcaaaatattgaaat
cgaTCAGTAttggtaccgtcaactgctccaactggggacgagtgtacgca
acatgggacttgttgatatatatatatatggcctgtattttcacttaagG
TTAAATccctttgacaacaaatttgttttgataactccaccaagtttatc
aatcatactttctgtcataacatgtcacgataactttcactgatagcgcg
ccctttttaacttttgttttcatttaaaatgaccagACGCcaaatggaga
attagagaacgcctaCCGCCCGATGagattaacaaatagcgagtCTGTAA
CTTGTCGCGCGAGTGATGTCAAACGCTCACATTCgcatgtgttccactac
ggatttttttcatatttcgatttaaaagcctactcggtgcaaaagagaaa
ttgtgtattttttaatacgcggttcatttaactgaaatcaaatgactttg
gaggttcggtgaaatggtggtggaatggccgtcccatgttccgtaagata
gtcccaagtttgAGCAGTTGGCGGTATATCAGTAATTGGGGAAAAAAGAT
CGGtatataccgtaacttggtctaatgtcgacatcattcctctaattccg
acaccctttttatcaggggccgtccacatagtacgtacgtaCTAAATCGT
TTGGTTCAGACCTtcatttcatacatgaaactcaatgtttattaagaaac
tttttcttttccttgatgccaACAAAAGTCAACAagtcaacaaaaaaaac
aagcaaaaaagggctatgaaaaaatCTCTCTGcatacgtacattttcctt
tgacccctcccctccccctgtacgcaaacatacacttttgagaagacccc
ctcccctctttagtgcgtacgtactatgtggacggaccccagctgaaatt
gatagaaaggttgaaactgtttttctttgcttagtggtcagagaggaata
ctcctttttcaatcagtcaTTCAAGCTTTCAtgttattcctgtctctaaa
gaatggtgtcgatattagaccaattTGCGGTAGGTATTCCCATACTCCCG
TACTCCCCCACTAGTTgccaatttttaaatttctgaaTGAGAGACAAGGT
GCGAGCGCAAAATTGAGTTAGGGATTTTTAATGGGTATTCGCTCTGAGCG
AATTGCTCTGGTGAGATTCCCTTAAAAAGTATGCAAAagatatgcaaaaa
gaaagtattgatataaaatttacatgcataattggcattatattaaagtg
taatcttgtagaagatagattaaatttgcttctcttgaaaactaaaaata
attatattcgctcatctcctagaacaagcacttcaaaaaaccataaattg
gacataaactcaagctgaaaaatcaccagcgaaggtacaaaaataatcct
tattcggctgacggtaaattattctcctgggaatagaaccgccaaatgat
caaTTTATTGATCTGAACCCCTGATTTACAGCGGCTTTTACTAATGTGTT
GGGTTTGACCTTGTATATCTAAACAGGGGTTTTAATATTTCTTGCACGGG
Taagaatgtgtgacgtcataattactgctttcagtttgtgtattttgaaa
gtttgatttgtgtactccgtctttgtggaattttttaatggcatgaaaac
agaatatgcttcAATGTCtttaaagaacaaatataatatttctttttgga
ttaagaaattccatgttttatttattgttctaatgattataataatattt
atttataagatgctttgttgtctttttaatctttgtgtaaacttgcgaCC
CCGTCTCTTTTGCTTTGGGGTTTCATAAGAGTGTCTCTTAtgttttgcta
gcaacttgcgaattgaggtggagtctggatggcttcgcaacccttataca
atacggctggtatcaccatctgaagtattcttatgTTTTTATGTGCTACC
AGACCTCACTAGGAAATTGTTTTATATAGGACAGTCAAAGGAATGGGCGA
AACTTTACTCTTGGtgaaaaaacttaatttttggaTGTATTATTCAAAGT
GTTACCTTTAAACCCAAGTTTAATTTAACATCacattcttttttgaattt
ttatgaaaatatcaGAAGGGTATTTATATTTCGGTTTTTGCTGCAACTTT
ACTGATTTTTATAGAAAGGAGCTCTCAATTTAGCAAATTCTGCAAAAAGA
GTATAAGCAGACCAACAATTGACTCAAAAAGTTTGTCTTAGGGGAGACTT
TATCTTGTTACAACACCCTTTCTACTGGAAAATTacttttaacatatttt
ttttggCTATAACTATACAGCACTGTCATGTATTTtactgattttacaaa
atggtCCATAACACTATTTTCAAATTCACTTATTGTTTCACTTATGACTT
GTTTCACTTGTCCCCACTTGAGACAAAAACAGGGGACAAACTTTGTAATC
CTtaacttcttttcctttttaACTTTCTTGTCTTTTATCATCTTCAAGTG
ATCTGTCTTCATTCTTCCCCCATTGTTTGTGTTACATAAGACCATAATAA
AAGATCTTGTTTAAGATGTTTTAACAATTTCtatatttgtttttatgaaT
ATTTTGTACTGACTTTTTGTTTCTGAGCTTTCCTATATCTTGTTTTCAAA
CTAAATATTCAGAAGGATCagtgttttaaattttgtttgagaaaaattgg
ttttataactttttgattttccaaTGACAACAAATTTTGTCCTGCCAATG
AATGGGATTTTTGACTCTAACTCATCCAAGGGGTCTTGTGACAAATCTCA
AGGCCTTTCCTGGCCTTTCATTGGTATTGATTGCTCTAAGTGGTTACAAA
ATTGACAGAAACTCAACTTCTAATCTGAAAAATGGCCAGTGGCAAAAgtg
cttgttttgatttttgatttttaagtacatctatccgcagacacgtgttt
cgtccttcccaggaGTCATCAGTGCGGCTTGGGTAAGCAAGCATAGACTG
ATGTTGTTACCAGAGTGATTTTTAAAGTACTACAGTAATGCAGTTTACAT
AAGCTTGCAtccttttaaaatcaattttttttatttttcagagatTACTA
TTGTTTTTATACTACTGACACATACAATAAATTGTAACCATGGGGAAGAt
gctatcaaaaatctttggtAACAAAGAGATGAGGATATTGATGCTTGGTC
TCGATGCTGCAGGAAAAACTAGTAAGCCTCATTCTTCTACATTTCCATAA
CAGCAGATCATCAACACTCTTAAAAGTGACTGTCATTGAGCTCTACTCCG
CCCTTCTAGAGTACATATGTCCTGAAAAGTGGATGTGCTTTTAGTATAAT
GAAAGTTATGTATAAGATGAGGCCTTTTTCAACAACCTCTATCTTACATA
TACATCTTATTATTCATTTTCAtatactttgaaaaaaaatcattttaaaa
gttgTCCTGACAGGTttattccaaattttttttgctttataagTATTAAA
TCACCCTTTTGTTATTTTATAGCTATATTATACAAATTGAAATTGGGACA
GTCAGTGACAACNAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053107-exon-scaffold_226-1491911889:157661..157811 | TCONS_00053107-exon-scaffold_226-1491911889:157661..157811 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1510915933:157661..157811 | TCONS_00053107-exon-scaffold_226-1510915933:157661..157811 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1575043694:157661..157811 | TCONS_00053107-exon-scaffold_226-1575043694:157661..157811 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1491911889:165852..165981 | TCONS_00053107-exon-scaffold_226-1491911889:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1510915933:165852..165981 | TCONS_00053107-exon-scaffold_226-1510915933:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1575043694:165852..165981 | TCONS_00053107-exon-scaffold_226-1575043694:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1491911889:166283..166325 | TCONS_00053107-exon-scaffold_226-1491911889:166283..166325 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1510915933:166283..166325 | TCONS_00053107-exon-scaffold_226-1510915933:166283..166325 | Clytia hemisphaerica | exon |
| TCONS_00053107-exon-scaffold_226-1575043694:166283..166325 | TCONS_00053107-exon-scaffold_226-1575043694:166283..166325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:157661..166325 + |
Blast
BLAST of TCONS_00053107 vs. Swiss-Prot (Human)
Match: ARF6 (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.559e-19 Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 2
Query: 200 MGKMLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT 322
MGK+LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT 41
The following BLAST results are available for this feature:
|
