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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053109 ID=TCONS_00053109|Name=TCONS_00053109|organism=Clytia hemisphaerica|type=transcript|length=322bp
AGCGAGTCTTTGCTTGGCAATTTGTTAACTTACCGCTGACCAGACGCGAA
ATTTCATCGCGGATTCCTTAAATTCAAATCGAATGAGTTGCGAAGAAGGA
AGGCGGCAATGGCGATGAGAGGAGAATTTGGCACGCCCAATTAAAAGAGa
gatTACTATTGTTTTTATACTACTGACACATACAATAAATTGTAACCATG
GGGAAGAtgctatcaaaaatctttggtAACAAAGAGATGAGGATATTGAT
GCTTGGTCTCGATGCTGCAGGAAAAACTACTATATTATACAAATTGAAAT
TGGGACAGTCAGTGACAACNAC Run BLAST on NCBI transcript from alignment at scaffold_226:160919..166325+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053109 ID=TCONS_00053109|Name=TCONS_00053109|organism=Clytia hemisphaerica|type=transcript|length=5407bp|location=Sequence derived from alignment at scaffold_226:160919..166325+ (Clytia hemisphaerica)
AGCGAGTCTTTGCTTGGCAATTTGTTAACTTACCGCTGACCAGACGCGAA
ATTTCATCGCGGATTCCTTAAATTCAAATCGAATGAGTTGCGAAGAAGGA
AGGCGGCAATGGCGATGAGAGGAGAATTTGGCACGCCCAATTAAAAGAGG
TATTTTTATCATGTAATTTGTtgagttttgacttttttcttatttacgAT
GTTTTTGCAGTACGtgtattctttatttttcacttttcattgagattttc
tttcattttgagGTAATTCTTTGGTGACTCAAAGTTCTTGCCCCATGCCA
TTTGCATTGCCAGTCNTGAGGTAATTCTTTGGTGACTCAAAGTTCTTGCC
CCATACCATTTGCATTGCCAGTCTGTATCAGTTTTTTGATACACCATTTT
AACTTTCCCTCTTATATGATTTCGTGAAACAACTGTTCACAAGCAATGCC
TAACAGTTCGCAAATAATCAATAGGAATTCTAGGCCCACATCATGATCTA
AAAGGAAACTCTTGCCTTGGCATGGCGGTGCACTAAACTGTGTTTCGGTT
GGAAACTCTCTCTCTGTTTGACTTTTGAGTCACTGAGTGGGAAAGCCTAA
GTTATAACCCCCAAAGTGTGATtccacttttttcttttttaattcgCTAT
CCTTCCTTGTAGTACCCTAGCTTTGATAAATGTCGACATACCTTGTTGTC
AAGTAGTATCTGGTATGATGCAAAGTACTAGAAGACCCTGTCGACGCAct
ggactgtccggtgtatttgtccggtggcaaaaagtatcctttcgctacac
cggatgCAATAaatccggtgttgcatacagggaattttggacgccggaca
tttatgaaacaaaaaattaagaaacataggacgcaccggactggtcatgt
ccggtgttttgattgtccggtgggaaaaaatatccttctccgacaccgga
catccgactcccttaagtccggtgtagaaattgtccagtggtaaaaaaaa
ttctcattttacaccggactttcgtgtgtccggtgttcgttaagtccggt
gcgtcggcagggtcctagtACTAGCACtacaggccatattttagaaaggc
aaggcagcgttcgttggtggccaaaaagggcactttttcttatgtttttc
cactaaaaaggctgtttttaacaaaattttagtaatttcaagagGGGCAG
CGTCCAATAACCGGACgcttaaagggcatgaaaaatggcctgcaCTAGTA
GGTTGAGTGATTTTTTTAACCAGCTTATTCAGAATGTTTTATAAACATTT
CaaagaccagatagttgctttgaaggaattagacaaggtacGTCGGCATC
ACACAAAGTTACAGACATATCTATTTGGGGAGGACCCTCCCGGCCCTCCG
GGAAACTTCCGGTGCTTCCGGAGCGAGTGATTCTTAACACAGTTCCAGAG
TTCCGGTGCAGACCAATTGCCGAAAATCGTGCTCTGGAACACCAGAAGTG
CTTGGAGCACAAAAAAACAGCACTTTTTGCTCCAGACGTTTCCAGAGCGC
CGAGAGGGTCCTATTTAGGGACGTACAGCAGGATATCGATACATCAGTAT
TGACCTTTTTTAGATCAGTACATCAGTATAgggagaaaaaaatccgtaAT
TGGTATTTCTGGAGCATCACTGTATTGGTAAAAGACCCTTTTTATGTCag
tatttcaatatttttggtcaGCTATCAGTATCATGTGGAATTATTCAAGA
AATCAAGTTttcatcattgaaatttttaaaagaaacaaGGGGAAGGGAGT
CTAAGAAATCTGAATATAAATGTTggttcaaaatattgaaatcgaTCAGT
Attggtaccgtcaactgctccaactggggacgagtgtacgcaacatggga
cttgttgatatatatatatatggcctgtattttcacttaagGTTAAATcc
ctttgacaacaaatttgttttgataactccaccaagtttatcaatcatac
tttctgtcataacatgtcacgataactttcactgatagcgcgcccttttt
aacttttgttttcatttaaaatgaccagACGCcaaatggagaattagaga
acgcctaCCGCCCGATGagattaacaaatagcgagtCTGTAACTTGTCGC
GCGAGTGATGTCAAACGCTCACATTCgcatgtgttccactacggattttt
ttcatatttcgatttaaaagcctactcggtgcaaaagagaaattgtgtat
tttttaatacgcggttcatttaactgaaatcaaatgactttggaggttcg
gtgaaatggtggtggaatggccgtcccatgttccgtaagatagtcccaag
tttgAGCAGTTGGCGGTATATCAGTAATTGGGGAAAAAAGATCGGtatat
accgtaacttggtctaatgtcgacatcattcctctaattccgacaccctt
tttatcaggggccgtccacatagtacgtacgtaCTAAATCGTTTGGTTCA
GACCTtcatttcatacatgaaactcaatgtttattaagaaactttttctt
ttccttgatgccaACAAAAGTCAACAagtcaacaaaaaaaacaagcaaaa
aagggctatgaaaaaatCTCTCTGcatacgtacattttcctttgacccct
cccctccccctgtacgcaaacatacacttttgagaagaccccctcccctc
tttagtgcgtacgtactatgtggacggaccccagctgaaattgatagaaa
ggttgaaactgtttttctttgcttagtggtcagagaggaatactcctttt
tcaatcagtcaTTCAAGCTTTCAtgttattcctgtctctaaagaatggtg
tcgatattagaccaattTGCGGTAGGTATTCCCATACTCCCGTACTCCCC
CACTAGTTgccaatttttaaatttctgaaTGAGAGACAAGGTGCGAGCGC
AAAATTGAGTTAGGGATTTTTAATGGGTATTCGCTCTGAGCGAATTGCTC
TGGTGAGATTCCCTTAAAAAGTATGCAAAagatatgcaaaaagaaagtat
tgatataaaatttacatgcataattggcattatattaaagtgtaatcttg
tagaagatagattaaatttgcttctcttgaaaactaaaaataattatatt
cgctcatctcctagaacaagcacttcaaaaaaccataaattggacataaa
ctcaagctgaaaaatcaccagcgaaggtacaaaaataatccttattcggc
tgacggtaaattattctcctgggaatagaaccgccaaatgatcaaTTTAT
TGATCTGAACCCCTGATTTACAGCGGCTTTTACTAATGTGTTGGGTTTGA
CCTTGTATATCTAAACAGGGGTTTTAATATTTCTTGCACGGGTaagaatg
tgtgacgtcataattactgctttcagtttgtgtattttgaaagtttgatt
tgtgtactccgtctttgtggaattttttaatggcatgaaaacagaatatg
cttcAATGTCtttaaagaacaaatataatatttctttttggattaagaaa
ttccatgttttatttattgttctaatgattataataatatttatttataa
gatgctttgttgtctttttaatctttgtgtaaacttgcgaCCCCGTCTCT
TTTGCTTTGGGGTTTCATAAGAGTGTCTCTTAtgttttgctagcaacttg
cgaattgaggtggagtctggatggcttcgcaacccttatacaatacggct
ggtatcaccatctgaagtattcttatgTTTTTATGTGCTACCAGACCTCA
CTAGGAAATTGTTTTATATAGGACAGTCAAAGGAATGGGCGAAACTTTAC
TCTTGGtgaaaaaacttaatttttggaTGTATTATTCAAAGTGTTACCTT
TAAACCCAAGTTTAATTTAACATCacattcttttttgaatttttatgaaa
atatcaGAAGGGTATTTATATTTCGGTTTTTGCTGCAACTTTACTGATTT
TTATAGAAAGGAGCTCTCAATTTAGCAAATTCTGCAAAAAGAGTATAAGC
AGACCAACAATTGACTCAAAAAGTTTGTCTTAGGGGAGACTTTATCTTGT
TACAACACCCTTTCTACTGGAAAATTacttttaacatattttttttggCT
ATAACTATACAGCACTGTCATGTATTTtactgattttacaaaatggtCCA
TAACACTATTTTCAAATTCACTTATTGTTTCACTTATGACTTGTTTCACT
TGTCCCCACTTGAGACAAAAACAGGGGACAAACTTTGTAATCCTtaactt
cttttcctttttaACTTTCTTGTCTTTTATCATCTTCAAGTGATCTGTCT
TCATTCTTCCCCCATTGTTTGTGTTACATAAGACCATAATAAAAGATCTT
GTTTAAGATGTTTTAACAATTTCtatatttgtttttatgaaTATTTTGTA
CTGACTTTTTGTTTCTGAGCTTTCCTATATCTTGTTTTCAAACTAAATAT
TCAGAAGGATCagtgttttaaattttgtttgagaaaaattggttttataa
ctttttgattttccaaTGACAACAAATTTTGTCCTGCCAATGAATGGGAT
TTTTGACTCTAACTCATCCAAGGGGTCTTGTGACAAATCTCAAGGCCTTT
CCTGGCCTTTCATTGGTATTGATTGCTCTAAGTGGTTACAAAATTGACAG
AAACTCAACTTCTAATCTGAAAAATGGCCAGTGGCAAAAgtgcttgtttt
gatttttgatttttaagtacatctatccgcagacacgtgtttcgtccttc
ccaggaGTCATCAGTGCGGCTTGGGTAAGCAAGCATAGACTGATGTTGTT
ACCAGAGTGATTTTTAAAGTACTACAGTAATGCAGTTTACATAAGCTTGC
AtccttttaaaatcaattttttttatttttcagagatTACTATTGTTTTT
ATACTACTGACACATACAATAAATTGTAACCATGGGGAAGAtgctatcaa
aaatctttggtAACAAAGAGATGAGGATATTGATGCTTGGTCTCGATGCT
GCAGGAAAAACTAGTAAGCCTCATTCTTCTACATTTCCATAACAGCAGAT
CATCAACACTCTTAAAAGTGACTGTCATTGAGCTCTACTCCGCCCTTCTA
GAGTACATATGTCCTGAAAAGTGGATGTGCTTTTAGTATAATGAAAGTTA
TGTATAAGATGAGGCCTTTTTCAACAACCTCTATCTTACATATACATCTT
ATTATTCATTTTCAtatactttgaaaaaaaatcattttaaaagttgTCCT
GACAGGTttattccaaattttttttgctttataagTATTAAATCACCCTT
TTGTTATTTTATAGCTATATTATACAAATTGAAATTGGGACAGTCAGTGA
CAACNAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053109-exon-scaffold_226-1491911889:160919..161067 | TCONS_00053109-exon-scaffold_226-1491911889:160919..161067 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1510915933:160919..161067 | TCONS_00053109-exon-scaffold_226-1510915933:160919..161067 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1575043694:160919..161067 | TCONS_00053109-exon-scaffold_226-1575043694:160919..161067 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1491911889:165852..165981 | TCONS_00053109-exon-scaffold_226-1491911889:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1510915933:165852..165981 | TCONS_00053109-exon-scaffold_226-1510915933:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1575043694:165852..165981 | TCONS_00053109-exon-scaffold_226-1575043694:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1491911889:166283..166325 | TCONS_00053109-exon-scaffold_226-1491911889:166283..166325 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1510915933:166283..166325 | TCONS_00053109-exon-scaffold_226-1510915933:166283..166325 | Clytia hemisphaerica | exon |
| TCONS_00053109-exon-scaffold_226-1575043694:166283..166325 | TCONS_00053109-exon-scaffold_226-1575043694:166283..166325 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:160919..166325 + |
Blast
BLAST of TCONS_00053109 vs. Swiss-Prot (Human)
Match: ARF6 (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.511e-19 Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 3
Query: 198 MGKMLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT 320
MGK+LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTT 41
The following BLAST results are available for this feature:
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