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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057069 ID=TCONS_00057069|Name=TCONS_00057069|organism=Clytia hemisphaerica|type=transcript|length=1758bpRun BLAST on NCBI protein sequence of TCONS_00057069-protein >TCONS_00057069-protein ID=TCONS_00057069-protein|Name=TCONS_00057069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=543bp MGERKGVNKYYPPDYDPSKGGLNAYHGTHALRERAKKIDQGILIIRFEMPRun BLAST on NCBI transcript from alignment at scaffold_285:324827..358594+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057069 ID=TCONS_00057069|Name=TCONS_00057069|organism=Clytia hemisphaerica|type=transcript|length=33768bp|location=Sequence derived from alignment at scaffold_285:324827..358594+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_285:324827..358594+ >TCONS_00057069 ID=TCONS_00057069|Name=TCONS_00057069|organism=Clytia hemisphaerica|type=CDS|length=14661bp|location=Sequence derived from alignment at scaffold_285:324827..358594+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057069 vs. Swiss-Prot (Human)
Match: CC130 (Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2) HSP 1 Score: 294.278 bits (752), Expect = 6.648e-93 Identity = 154/326 (47.24%), Postives = 207/326 (63.50%), Query Frame = 3
Query: 129 MGERKGVNKYYPPDYDPSK-GGLNAYHGTHALRERAKKIDQGILIIRFEMPYNIWCNGCGNHIGMGVRYNAEKRRVGAYYSTPIYKFRMKCALCDQFFEIRTDPQNCDYEILSGCRRKEERWDTEAAGNVQTTHREVKEKMMTNAMFQLEHNAEDKVKVKKLAPTLTRLEEIRDTWDDDFSVNQKLRKKFRQEKKEIKDKEDLNSSFKNNKGLPEDFVLQDEHQDDVIKSKRMRYGEDTRPDHVRKRQRTSIKQSSIFGIEARKFQLSKALXXXXXXXXXXXXXXXXXXXNFKAMALGIVRKRKRSAASSETDLTPSTQSETQKSG 1103
MGERKGVNKYYPPD++P K G LN YH +H LRERA+K+ QGILIIRFEMPYNIWC+GC NHIGMGVRYNAEK++VG YY+TPIY+FRMKC LC + E++TDP NCDY I+SG +RKEERWD V TT E K+K+ T+AMF+LEH D+ +KK PTL+ ++E + W DDF++N LR++FR++KK I+++E+ + + + L L E +DD + +++ + +K +RT I S F SK + K+ S ++ S LGIVR+R R S P ++T KSG
Sbjct: 1 MGERKGVNKYYPPDFNPEKHGSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQEAQSAWKDDFALNSMLRRRFREKKKAIQEEEERDQALQAKASL--TIPLVPETEDDRKLAALLKFHTLDSYEDKQKLKRTEIISRSWFPSAPGSASSSKV--SGVLKKLAQSRRTALATSPITVGDLGIVRRRSRDVPES-----PQHAADTPKSG 317 The following BLAST results are available for this feature:
BLAST of TCONS_00057069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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