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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053147 ID=TCONS_00053147|Name=TCONS_00053147|organism=Clytia hemisphaerica|type=transcript|length=3139bpRun BLAST on NCBI protein sequence of TCONS_00053147-protein >TCONS_00053147-protein ID=TCONS_00053147-protein|Name=TCONS_00053147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=726bp FSGSIHTKEKKNKKKINDFQMYLHLLNKASIHASCLRNGLSKVPGGLSLSRun BLAST on NCBI transcript from alignment at scaffold_226:367069..404493+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053147 ID=TCONS_00053147|Name=TCONS_00053147|organism=Clytia hemisphaerica|type=transcript|length=37425bp|location=Sequence derived from alignment at scaffold_226:367069..404493+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:367069..404493+ >TCONS_00053147 ID=TCONS_00053147|Name=TCONS_00053147|organism=Clytia hemisphaerica|type=CDS|length=39258bp|location=Sequence derived from alignment at scaffold_226:367069..404493+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053147 vs. Swiss-Prot (Human)
Match: ABCB8 (ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3) HSP 1 Score: 627.861 bits (1618), Expect = 0.000e+0 Identity = 313/583 (53.69%), Postives = 423/583 (72.56%), Query Frame = 1
Query: 421 AKFNWAMLWELMKPDIMWXXXXXXXXXXXXXXXXKIPLLLGGLVNSITTLLRHESEIGDVFEELYGPCKKLVISYIIQSSLTFLYITSLSCFGERLAARLRIKLFQNLMEQDVVFFDEHKTGEVINRLTTDIQDFKSSFKQVVSQGLRSVTQAIGGGMTLYALSPKLTYLMLLVLPGIIMVGTGLGSLLRKLSKDAQEQISLAMAIADEAVGNIRTVRAFAMENKEIGWYAKEIQESRFQYEILGAGIGAFQALSNFAINGIILLVLYTGTVLIDRKEMAAGDLMSYLVATQSIQKSLSTISILFGQMVRGMSSGARVFEYMESRPSMRLSGGLRIDKSALKGHIEFKNVSFAYPTRADQVVIEDLSLNIEPGKTVALCGSSGSGKSTIAALIERFYDVQGGEVIIDGLNIKELDPSWVRGELIGYINQEPTLFATTVMENIRYGSPMATDQEVYEAAKCANADEFIKGFPQGYNTVVGERGATVSGGQKQRIAIARALLKNPKILILDEATSALDAESERIVQSALDNLIKGRTVIVIAHRLSTIQNADLIAAISKGKIVEMGSHSQLLEKNGLYADLIRRQ 2169
++FNW + W+ + P ++ A V A ALVNV+IPLLLG LV + R +G E L+I Y +Q LTF Y+ LS GER+A +R LF +L+ QD+ FFD +KTG++++RLTTD+Q+FKSSFK V+SQGLRS TQ G ++L LS +LT L+++ P ++ VGT +GS LRKLS+ QEQI+ AM +ADEA+GN+RTVRAFAME +E Y E++ R + E LG GI FQ LSN A N ++L L+ G L+ +++ GDLMS+LVA+Q++Q+S++ +S+LFGQ+VRG+S+GARVFEYM P + LSGG + K L+G + F+NV F+YP R V++D +L + PGK VAL G SG GK+T+A+L+ERFYD G V++DG +++ LDPSW+RG+++G+I+QEP LF TT+MENIR+G A+D+EVY AA+ ANA EFI FP+GYNTVVGERG T+SGGQKQR+AIARAL+K P +LILDEATSALDAESER+VQ ALD GRTV+VIAHRLST++ A I ++ G++ E G+H +LL+K GLYA+LIRRQ
Sbjct: 130 SRFNWKLFWQFLHPHLLVLGVAVVLALGAALVNVQIPLLLGQLVEVVAKYTR--DHVGSFMTESQNLSTHLLILYGVQGLLTFGYLVLLSHVGERMAVDMRRALFSSLLRQDITFFDANKTGQLVSRLTTDVQEFKSSFKLVISQGLRSCTQVAGCLVSLSMLSTRLTLLLMVATPALMGVGTLMGSGLRKLSRQCQEQIARAMGVADEALGNVRTVRAFAMEQREEERYGAELEACRCRAEELGRGIALFQGLSNIAFNCMVLGTLFIGGSLVAGQQLTGGDLMSFLVASQTVQRSMANLSVLFGQVVRGLSAGARVFEYMALNPCIPLSGGCCVPKEQLRGSVTFQNVCFSYPCRPGFEVLKDFTLTLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVMLDGRDLRTLDPSWLRGQVVGFISQEPVLFGTTIMENIRFGKLEASDEEVYTAAREANAHEFITSFPEGYNTVVGERGTTLSGGQKQRLAIARALIKQPTVLILDEATSALDAESERVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWEAGTHEELLKKGGLYAELIRRQ 710 The following BLAST results are available for this feature:
BLAST of TCONS_00053147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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