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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053258 ID=TCONS_00053258|Name=TCONS_00053258|organism=Clytia hemisphaerica|type=transcript|length=1542bp
gaaagtgcaaaaacacgtcaaaaatgagGTATCAAATTGTAATTGTTTTA
TTTGTCATTCCTTTATGTTTCTTGAGCGTGCTAATGTTTTACAACGTCAT
TAATTAGTGTTATAGGTAATTAACgctttataaaataataaataaacaat
gaaataaaaatgaaaatatatttttatataattttaccaaaaatattgTG
CAAAGATGAGTGTGAGAGGAAAAGTTGCTTTCTTTGTGAGAATGCCGCGT
CTTACGAAAGATCAGAGAGTGTGGGTTTGCCTAGAGTATGCCAGAGTGGA
TAATGCGTTTGAAGTAAAGAGGCGATGGTTGAATCAATGGCCTAATGATC
CGGCTCCTAGTGACTTAACAATAAAAAAGACTTATGATAAATTCGTAAGG
GAGGGAACCTGCCTCAATCTTCATAAAGGACGTAGCGGTCCAAGAAAAAC
TGCCAGGACACAAGCAAATATCAATGCTGCTCGTCAGTCCCTTcagcaag
atgggaaaagatcGTCTCGAAGGAATGGTCTTAATCTCACAAGAAGTTAT
TTTTTGAGAATAGTCCATTTAGATCTCAAGTTCCACCCGTATGTTTtaat
aaaaaggaaaaagttGAAACCTGGAGATCCTGCCCTTCGACTGCAATTTT
GTAATGATCTTGTTACCAAAATTACAAACGACCCTGGTTTCCTAAACAAG
TTGATCGTCTCTGATGAAGCCATCTTCAGCCTGAACTCTGAAGTTAACAC
CCGAAATGTTGTCAAATATTCAGCGTTTGGTAATGGCCATCCAGATGATC
ATTATGTTGAATTTGAACAAGGTCCAGGGAAGATCATGGTTTGGATGGGC
TTAACAAGGGAGGGGAAGATATTTGGCCCACATGTTGTCCGCAATCGATT
GGACACACGAGAGTATCTAAGAATCGTGAGGTATAATGTCGTTCAACGAG
AATTTGCAAGAAATAACATCAACCAAAATATCATGTGGTGGCAGCAAGAC
GGTGCCCCGTCTCACACTAGCAATGCTACACTTCAGTATCTCCGTGGTCG
TGTGTTGAGTAAAGGCGGCGATTGGCATTGGCCTGCCCGATCTCCTGACT
TGGCAGTTTGCGATTTTTTCTTGTGGGGTCATCTCAAGCAGAAGATTTGG
GAGGTTCCTGTTAATCAGCAACCTCAAAACCTGGATGAATTAGAAGACAA
ATTGAGAGAGGCTTGTGACAACCTCAACCTTCAATTCATCAGGAATGCAT
TCGATGCAATGGTGACTCGCGCTAGAAAGTGCATTGCAGTTGGTGGTGGT
TTATTTCcaaatgaataatttttttatttattttgcgaagaatgcaaaaa
aaagttttcaaattgaattaaaatgtcTCACATATTCTTTTCCTCAGATT
TAACGACCTTGATTGATAACTGAtaacaaaattatttaataccccttttt
tacgtgttttttacactttccgaaaagtgaatttttagtttgaaagctca
taagtagagaactagttggtcaaatttaaaaagtaatagctc Run BLAST on NCBI protein sequence of TCONS_00053258-protein >TCONS_00053258-protein ID=TCONS_00053258-protein|Name=TCONS_00053258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp
MSVRGKVAFFVRMPRLTKDQRVWVCLEYARVDNAFEVKRRWLNQWPNDPA
PSDLTIKKTYDKFVREGTCLNLHKGRSGPRKTARTQANINAARQSLQQDG
KRSSRRNGLNLTRSYFLRIVHLDLKFHPYVLIKRKKLKPGDPALRLQFCN
DLVTKITNDPGFLNKLIVSDEAIFSLNSEVNTRNVVKYSAFGNGHPDDHY
VEFEQGPGKIMVWMGLTREGKIFGPHVVRNRLDTREYLRIVRYNVVQREF
ARNNINQNIMWWQQDGAPSHTSNATLQYLRGRVLSKGGDWHWPARSPDLA
VCDFFLWGHLKQKIWEVPVNQQPQNLDELEDKLREACDNLNLQFIRNAFD
AMVTRARKCIAVGGGLFPNE Run BLAST on NCBI transcript from alignment at scaffold_227:159022..160563 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053258 ID=TCONS_00053258|Name=TCONS_00053258|organism=Clytia hemisphaerica|type=transcript|length=1542bp|location=Sequence derived from alignment at scaffold_227:159022..160563 (Clytia hemisphaerica)
gagctattactttttaaatttgaccaactagttctctacttatgagcttt
caaactaaaaattcacttttcggaaagtgtaaaaaacacgtaaaaaaggg
gtattaaataattttgttaTCAGTTATCAATCAAGGTCGTTAAATCTGAG
GAAAAGAATATGTGAgacattttaattcaatttgaaaacttttttttgca
ttcttcgcaaaataaataaaaaaattattcatttgGAAATAAACCACCAC
CAACTGCAATGCACTTTCTAGCGCGAGTCACCATTGCATCGAATGCATTC
CTGATGAATTGAAGGTTGAGGTTGTCACAAGCCTCTCTCAATTTGTCTTC
TAATTCATCCAGGTTTTGAGGTTGCTGATTAACAGGAACCTCCCAAATCT
TCTGCTTGAGATGACCCCACAAGAAAAAATCGCAAACTGCCAAGTCAGGA
GATCGGGCAGGCCAATGCCAATCGCCGCCTTTACTCAACACACGACCACG
GAGATACTGAAGTGTAGCATTGCTAGTGTGAGACGGGGCACCGTCTTGCT
GCCACCACATGATATTTTGGTTGATGTTATTTCTTGCAAATTCTCGTTGA
ACGACATTATACCTCACGATTCTTAGATACTCTCGTGTGTCCAATCGATT
GCGGACAACATGTGGGCCAAATATCTTCCCCTCCCTTGTTAAGCCCATCC
AAACCATGATCTTCCCTGGACCTTGTTCAAATTCAACATAATGATCATCT
GGATGGCCATTACCAAACGCTGAATATTTGACAACATTTCGGGTGTTAAC
TTCAGAGTTCAGGCTGAAGATGGCTTCATCAGAGACGATCAACTTGTTTA
GGAAACCAGGGTCGTTTGTAATTTTGGTAACAAGATCATTACAAAATTGC
AGTCGAAGGGCAGGATCTCCAGGTTTCaactttttcctttttattaAAAC
ATACGGGTGGAACTTGAGATCTAAATGGACTATTCTCAAAAAATAACTTC
TTGTGAGATTAAGACCATTCCTTCGAGACgatcttttcccatcttgctgA
AGGGACTGACGAGCAGCATTGATATTTGCTTGTGTCCTGGCAGTTTTTCT
TGGACCGCTACGTCCTTTATGAAGATTGAGGCAGGTTCCCTCCCTTACGA
ATTTATCATAAGTCTTTTTTATTGTTAAGTCACTAGGAGCCGGATCATTA
GGCCATTGATTCAACCATCGCCTCTTTACTTCAAACGCATTATCCACTCT
GGCATACTCTAGGCAAACCCACACTCTCTGATCTTTCGTAAGACGCGGCA
TTCTCACAAAGAAAGCAACTTTTCCTCTCACACTCATCTTTGCAcaatat
ttttggtaaaattatataaaaatatattttcatttttatttcattgttta
tttattattttataaagcGTTAATTACCTATAACACTAATTAATGACGTT
GTAAAACATTAGCACGCTCAAGAAACATAAAGGAATGACAAATAAAACAA
TTACAATTTGATACctcatttttgacgtgtttttgcactttc Coding sequence (CDS) from alignment at scaffold_227:159022..160563 >TCONS_00053258 ID=TCONS_00053258|Name=TCONS_00053258|organism=Clytia hemisphaerica|type=CDS|length=1113bp|location=Sequence derived from alignment at scaffold_227:159022..160563 (Clytia hemisphaerica)
ttattcatttgGAAATAAACCACCACCAACTGCAATGCACTTTCTAGCGC
GAGTCACCATTGCATCGAATGCATTCCTGATGAATTGAAGGTTGAGGTTG
TCACAAGCCTCTCTCAATTTGTCTTCTAATTCATCCAGGTTTTGAGGTTG
CTGATTAACAGGAACCTCCCAAATCTTCTGCTTGAGATGACCCCACAAGA
AAAAATCGCAAACTGCCAAGTCAGGAGATCGGGCAGGCCAATGCCAATCG
CCGCCTTTACTCAACACACGACCACGGAGATACTGAAGTGTAGCATTGCT
AGTGTGAGACGGGGCACCGTCTTGCTGCCACCACATGATATTTTGGTTGA
TGTTATTTCTTGCAAATTCTCGTTGAACGACATTATACCTCACGATTCTT
AGATACTCTCGTGTGTCCAATCGATTGCGGACAACATGTGGGCCAAATAT
CTTCCCCTCCCTTGTTAAGCCCATCCAAACCATGATCTTCCCTGGACCTT
GTTCAAATTCAACATAATGATCATCTGGATGGCCATTACCAAACGCTGAA
TATTTGACAACATTTCGGGTGTTAACTTCAGAGTTCAGGCTGAAGATGGC
TTCATCAGAGACGATCAACTTGTTTAGGAAACCAGGGTCGTTTGTAATTT
TGGTAACAAGATCATTACAAAATTGCAGTCGAAGGGCAGGATCTCCAGGT
TTCaactttttcctttttattaAAACATACGGGTGGAACTTGAGATCTAA
ATGGACTATTCTCAAAAAATAACTTCTTGTGAGATTAAGACCATTCCTTC
GAGACgatcttttcccatcttgctgAAGGGACTGACGAGCAGCATTGATA
TTTGCTTGTGTCCTGGCAGTTTTTCTTGGACCGCTACGTCCTTTATGAAG
ATTGAGGCAGGTTCCCTCCCTTACGAATTTATCATAAGTCTTTTTTATTG
TTAAGTCACTAGGAGCCGGATCATTAGGCCATTGATTCAACCATCGCCTC
TTTACTTCAAACGCATTATCCACTCTGGCATACTCTAGGCAAACCCACAC
TCTCTGATCTTTCGTAAGACGCGGCATTCTCACAAAGAAAGCAACTTTTC
CTCTCACACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053258-exon-scaffold_227-1491911889:159022..160563 | TCONS_00053258-exon-scaffold_227-1491911889:159022..160563 | Clytia hemisphaerica | exon |
| TCONS_00053258-exon-scaffold_227-1510915933:159022..160563 | TCONS_00053258-exon-scaffold_227-1510915933:159022..160563 | Clytia hemisphaerica | exon |
| TCONS_00053258-exon-scaffold_227-1575043694:159022..160563 | TCONS_00053258-exon-scaffold_227-1575043694:159022..160563 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:159022..160563 . |
Blast
The following BLAST results are available for this feature:
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