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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053260 ID=TCONS_00053260|Name=TCONS_00053260|organism=Clytia hemisphaerica|type=transcript|length=747bp
ATGGCAATGGCTGCTCAATCCAATGGCGATGTTGCTACAGCTAGTCGTGA
ACACTTCTACCGCACATCAAGGAGAGAACAATAAAAGCCGACAATACTGC
GAAGTGTCGCGAACCCCAGATTGGAATGCCAACAGTAGcgaatttcaatt
tcataaacATTCTTACACAAAACACCCGTGGGATCAAGTCCCCCAAACGT
ATCCATGAACTATCTGGGAAAATGAACAAACACAATACATTTGCTTTATG
TATCCAAGAGACTTGGAGAAGTGGTGATTCGATTGAAACAATTAATGACT
GCACTTTTTTACTGCATGGGCTTCCTCGTGAACTCAATACAAGTCGTCGA
GGGCAAGGTGGAGTAGGGATAGTCTTAAATAATATCGGAACTCAATCATG
GAAAGAAGCTGGTTCACTTATCATTACTGACTTCGGCCCTCGTATCATTG
CAACCCGACTTAAAGTGGCTGATCAAAGAAATAAACCATGCTGTGTATTC
CTCATTTCTGCGTATGCACCAATCGGCGCTGCCAAACAATTGACGTGGaa
tcattttcttgacaatCTTCAAAAATGTATTGATATCAAACACGAAAATG
ACATTATGATCATTGGTTGCGACACTAACTCCTCTATGGGTACCTGCAAT
GATGCTCGAATAGGTCCATCCATCTCGTCGATTGGTAAATTTGGTATCCC
ATACCGCAATGCAGCAGGTACCCGTTTTCTCACCTTTCTTGAAATCA Run BLAST on NCBI protein sequence of TCONS_00053260-protein >TCONS_00053260-protein ID=TCONS_00053260-protein|Name=TCONS_00053260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MPTVANFNFINILTQNTRGIKSPKRIHELSGKMNKHNTFALCIQETWRSG
DSIETINDCTFLLHGLPRELNTSRRGQGGVGIVLNNIGTQSWKEAGSLII
TDFGPRIIATRLKVADQRNKPCCVFLISAYAPIGAAKQLTWNHFLDNLQK
CIDIKHENDIMIIGCDTNSSMGTCNDARIGPSISSIGKFGIPYRNAAGTR
FLTFLEI Run BLAST on NCBI transcript from alignment at scaffold_227:194408..195154 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053260 ID=TCONS_00053260|Name=TCONS_00053260|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at scaffold_227:194408..195154 (Clytia hemisphaerica)
TGATTTCAAGAAAGGTGAGAAAACGGGTACCTGCTGCATTGCGGTATGGG
ATACCAAATTTACCAATCGACGAGATGGATGGACCTATTCGAGCATCATT
GCAGGTACCCATAGAGGAGTTAGTGTCGCAACCAATGATCATAATGTCAT
TTTCGTGTTTGATATCAATACATTTTTGAAGattgtcaagaaaatgattC
CACGTCAATTGTTTGGCAGCGCCGATTGGTGCATACGCAGAAATGAGGAA
TACACAGCATGGTTTATTTCTTTGATCAGCCACTTTAAGTCGGGTTGCAA
TGATACGAGGGCCGAAGTCAGTAATGATAAGTGAACCAGCTTCTTTCCAT
GATTGAGTTCCGATATTATTTAAGACTATCCCTACTCCACCTTGCCCTCG
ACGACTTGTATTGAGTTCACGAGGAAGCCCATGCAGTAAAAAAGTGCAGT
CATTAATTGTTTCAATCGAATCACCACTTCTCCAAGTCTCTTGGATACAT
AAAGCAAATGTATTGTGTTTGTTCATTTTCCCAGATAGTTCATGGATACG
TTTGGGGGACTTGATCCCACGGGTGTTTTGTGTAAGAATgtttatgaaat
tgaaattcgCTACTGTTGGCATTCCAATCTGGGGTTCGCGACACTTCGCA
GTATTGTCGGCTTTTATTGTTCTCTCCTTGATGTGCGGTAGAAGTGTTCA
CGACTAGCTGTAGCAACATCGCCATTGGATTGAGCAGCCATTGCCAT Coding sequence (CDS) from alignment at scaffold_227:194408..195154 >TCONS_00053260 ID=TCONS_00053260|Name=TCONS_00053260|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_227:194408..195154 (Clytia hemisphaerica)
GATTTCAAGAAAGGTGAGAAAACGGGTACCTGCTGCATTGCGGTATGGGA
TACCAAATTTACCAATCGACGAGATGGATGGACCTATTCGAGCATCATTG
CAGGTACCCATAGAGGAGTTAGTGTCGCAACCAATGATCATAATGTCATT
TTCGTGTTTGATATCAATACATTTTTGAAGattgtcaagaaaatgattCC
ACGTCAATTGTTTGGCAGCGCCGATTGGTGCATACGCAGAAATGAGGAAT
ACACAGCATGGTTTATTTCTTTGATCAGCCACTTTAAGTCGGGTTGCAAT
GATACGAGGGCCGAAGTCAGTAATGATAAGTGAACCAGCTTCTTTCCATG
ATTGAGTTCCGATATTATTTAAGACTATCCCTACTCCACCTTGCCCTCGA
CGACTTGTATTGAGTTCACGAGGAAGCCCATGCAGTAAAAAAGTGCAGTC
ATTAATTGTTTCAATCGAATCACCACTTCTCCAAGTCTCTTGGATACATA
AAGCAAATGTATTGTGTTTGTTCATTTTCCCAGATAGTTCATGGATACGT
TTGGGGGACTTGATCCCACGGGTGTTTTGTGTAAGAATgtttatgaaatt
gaaattcgCTACTGTTGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053260-exon-scaffold_227-1491911889:194408..195154 | TCONS_00053260-exon-scaffold_227-1491911889:194408..195154 | Clytia hemisphaerica | exon |
| TCONS_00053260-exon-scaffold_227-1510915933:194408..195154 | TCONS_00053260-exon-scaffold_227-1510915933:194408..195154 | Clytia hemisphaerica | exon |
| TCONS_00053260-exon-scaffold_227-1575043694:194408..195154 | TCONS_00053260-exon-scaffold_227-1575043694:194408..195154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:194408..195154 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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