TCONS_00053266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053266
Unique NameTCONS_00053266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length577

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053266 ID=TCONS_00053266|Name=TCONS_00053266|organism=Clytia hemisphaerica|type=transcript|length=577bp
GTTTTactcagtttttgatcatgtTATTAAATAATGAACCAATCCCATGA
GGAgaatttggtaacgtgatcaaaaactgagcaaatcgattctTAACTTC
ACAAAGGAAAAGatttaacaaaaagttacaacaatAGACTTCCAGACCAG
GTTTTTTTTTGCGGACTATGATGCAAAGCAAAAAAGCCACTGAACTTCTT
TCCGACCACTTTGGCAAAAGCAAGGTCAGACATCATTTTATCATATTGCT
CACAGAGCACAACACATAAAAGAAATTGTCAACATGTTAATTAAACTCAG
CTTAATTCCTCCTTCTTTACTTTAGCGAAAGTCAGGTCCTCCAGTCTGTC
TCCACGTTTTGGCACTCGGAACCCTGGCTTGATATATTGGGTTTTTCTTG
TGTAAATAAATCTCATTCcatccaaataaaaacaaatgcTCTGTTTCCAG
AATTCAAGCCTAAGTCCCAACTTTTCGATAGGTCTGGTAAACTTTAATCT
CATGCCTGGTGGTTGTGCAGAAATTTGCAGTACCATTCTTCTTATCATTA
CTTGTAATTATCATTGTTTCTTATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_227:495195..495771

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053266 ID=TCONS_00053266|Name=TCONS_00053266|organism=Clytia hemisphaerica|type=transcript|length=577bp|location=Sequence derived from alignment at scaffold_227:495195..495771 (Clytia hemisphaerica)
AAAATAAGAAACAATGATAATTACAAGTAATGATAAGAAGAATGGTACTG
CAAATTTCTGCACAACCACCAGGCATGAGATTAAAGTTTACCAGACCTAT
CGAAAAGTTGGGACTTAGGCTTGAATTCTGGAAACAGAgcatttgttttt
atttggatgGAATGAGATTTATTTACACAAGAAAAACCCAATATATCAAG
CCAGGGTTCCGAGTGCCAAAACGTGGAGACAGACTGGAGGACCTGACTTT
CGCTAAAGTAAAGAAGGAGGAATTAAGCTGAGTTTAATTAACATGTTGAC
AATTTCTTTTATGTGTTGTGCTCTGTGAGCAATATGATAAAATGATGTCT
GACCTTGCTTTTGCCAAAGTGGTCGGAAAGAAGTTCAGTGGCTTTTTTGC
TTTGCATCATAGTCCGCAAAAAAAAACCTGGTCTGGAAGTCTattgttgt
aactttttgttaaatCTTTTCCTTTGTGAAGTTAagaatcgatttgctca
gtttttgatcacgttaccaaattcTCCTCATGGGATTGGTTCATTATTTA
ATAacatgatcaaaaactgagtAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033628XLOC_033628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053266-exon-scaffold_227-1491911889:495195..495771TCONS_00053266-exon-scaffold_227-1491911889:495195..495771Clytia hemisphaericaexon
TCONS_00053266-exon-scaffold_227-1510915933:495195..495771TCONS_00053266-exon-scaffold_227-1510915933:495195..495771Clytia hemisphaericaexon
TCONS_00053266-exon-scaffold_227-1575043694:495195..495771TCONS_00053266-exon-scaffold_227-1575043694:495195..495771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:495195..495771 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	27.7544	27.9087	18.1961	27.1408	16.1256	11.5231	8.93488	8.94853	7.18212	4.84855	0	0.176243	0.217117	0	0	0	0	0	0	0.100495	0.828063	4.9906	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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