TCONS_00053328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053328
Unique NameTCONS_00053328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053328 ID=TCONS_00053328|Name=TCONS_00053328|organism=Clytia hemisphaerica|type=transcript|length=816bp
CAAGGAATAAAAACATAGTTTTGGTTTTAAGCTGTGCATCTTTTAGACAT
GTTTCTGCTTTATCTGTTTTTAATGGGAATTTCGTCCTCATTTTCGCAGA
AATGTAAAAGACAGGTTCCCGAGAACAGACATGGCATTCGACCAATAGTC
ATCACCAACAAAGCTGAAGCTGTTCAAcaaaataatctcaaaaagACATT
ACCCATTTCATCACCGGAGTGGGAGGTAGAATTGAACCTGACAATACATG
CAAATCATGTAAACACTGGAATACCAGGAGGGCATTGGTGTTCCGTACTC
CATATGACAAAAGGCGATGATCAAGGTTTGCATGGCGAGCGTACACCGGC
AATATTTTATAATAGTATTGATGGGAGACTACAGATTGCGTCCACTGTAG
GAAATGATTTCAACCATAAATTCGATCTTCCTATCGAGTTCAATAACCAG
TACCAAATAAAGATCAGCCAAAGATATAAAAACGGAGGCGTTTACGAGTA
TTCGATTGAAATAAATGGAGAAAAGGTTCACGCTGTTGATAATCTAAAAG
CACAACAATTTTATGGAGTCAAAGTTTACCTCGGAAACCCATGGAACTTG
CCATGTGTTGCAACAATAAGCTATATGAATATCGTGAATTTCCTGTAGAT
TTTGATCAGAGAATTTTCACGATAGCGTGACAGTACTGACTTCAAAGGAG
AATATTTTTGCGTCAAAAAATTATAGGGTTGCTTGTCATTCTCCATTAGG
GGCCACCTTTTCTTCTTTATAAGAGGTACTTTACGTGTGCGTCTACAAAT
TGCCTTCGTATCTAGC
Run BLAST on NCBI

transcript from alignment at scaffold_228:290281..293547-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053328 ID=TCONS_00053328|Name=TCONS_00053328|organism=Clytia hemisphaerica|type=transcript|length=3267bp|location=Sequence derived from alignment at scaffold_228:290281..293547- (Clytia hemisphaerica)
CAAGGAATAAAAACATAGTTTTGGTTTTAAGCTGTGCATCTTTTAGACAT
GTTTCTGCTTTATCTGTTTTTAATGGGAATTTCGTCCTCATTTTCGCAGA
AATGTAAAAGACAGGTTAGTACGATTCATTACCAGTGTGTACCGAAAAAA
GCGTACAAATTTTTCTTTGAAAATAAAAAAGCATTATCCAAACTGGGCTT
TTAACAATTGAAATAAGATTGAAATTCTCTGTTCAATCAATATATATTCA
ATTCCTAAGACGAGTGAAAATGTTTTAGAGATTGAAATATTAAGTAAACA
AGTTATAAAATCTCGCATTTTTCATGAGAATTTTACTTTGTACAAAAATT
TGTCCACTTTTTTGGGAAACTGTACAGTGTGTTCGTAAAAAAACGAGCAG
ATTTTTTTATAAAGTTCACTGAGTTCAGAATACTTAAATCAGAGGGAATT
TCTTTGTTCAATCAACTGTTGGCTCAGACTTGGATTTTCTTGATTTTTCA
AAAAAAATTCAAGCTTTAATGTTCTTACGATATTCTTAACACGTTTAGTT
TCTTTACTTAAAATCTAAAATAGTTTTTATTTAAATCTGTTAAAATTTTT
TACTTTAGCAGTAATTTCTGAAATCTGAGGTCAGGATTGTTCTGAAATTG
TTTTTAAGTTTTGGCCAACTTTTAGCTAAAATTGTTCGCTAAGGCTTGGA
AATGGAATTATTGAAATATTGAAATACATCTTGCATTTTAGCAGGGATTT
CAGTTTCCAAATGGGTAGATATAAAGAAACGCAAGACCAAAATGATTTTG
ATATCCCTGAAGTATTTACCATTGCAAAAAGAATTTTGGTCTTAAACTCG
TCGTTAAGCTCGTCTTTAAAAACTTTCATTTTGACTTTTGACAAAAATTA
TTTTTTCTTGCTAAAAAGAGATCATAGAAGACGAAATGGTATTATGAAAA
ACTGAAAAGCTTAAGATTTATTTTGCTCAAAGACCTCATTGAAGATTTCC
ATCTCTCAAAACTTCAGAAGTGTGAGTTTATTTATTGAAACAGAGGCCGT
TAAACGGCATGCTACCCAAAATTTAGTACAAATAAAAAAAAACAGACCTG
AAAAGGCCCTAAATTTTTTTTCCTCCTAATTTTTGCCTTTAGTGCGATTT
TTAACAGAAGGCCTCGCAATATTTAGGACTTCTGATCTTAAATTGGACCT
CACAATAGGTTAAATTTTTATTAAAAAATAAACAATACACCTTGAAGTTT
ATGACTTCAGCCCCCTCCCAAAAAAGGCTGTTGACATCCTACCCTACTCG
AGAAAACAGAATAAAATGAGAAAATTGAGGAGTTTTAAAGAACAGTTTCA
AAATCAAGGGGGGGGTGAGTTTCAATGAACGTGAGAACCCTGCTATGAAT
GATATTCTCCAAGATGTTTTAAATTGGTAGCATCTTTAAATTTTCTAAAT
GCCAAGTTAACAAAGATTTCTTTTTATGTAGGTTCCCGAGAACAGACATG
GCATTCGACCAATAGTCATCACCAACAAAGGTAACGTGAATTTTGGAGAG
TAATTATTTAAAGTCCGTTCGCTTTAAGTATACACTTCTCTTATTTAATA
AACTTCAACTTCTTTTAAACGCCTTCCCTTTGAAAAACCGAAATAATTTA
ATAAACATTGGTCAAAAAGAGTACAATATATCTTGTATTTTACATGTACA
AAATATAAATTGACGCAAAGATGTTGTTGCATTGTTGTTGCAGTAGCAGC
AATCTAACGTGATTTTGCTAAAAAGAAGTGTCCTCCGCTTTATTCCAACA
CAAAAAGTGCATATATTTGGGTCACCGATAAACCCCTTCCCTTTGAAAGA
CTGAAAAACTGAAACAATTAATATCTTCTTCTATAAAAAGTGCTAAGTTT
TAATAGATAGTTAACCTTTTTGTTTCTAAATTTTTCAAACTGTCCGCAAA
GAATTGAACTGTTAATTTTTTCAGAAAAATTCTGTTTTTCTGTGAAGAAT
TTGGATGAAAAATTGGTCAAAAAGCACTATTTTCAAGATTTTGAGATAAA
TGAGCTTTTAGAAAAATTTTCCGAAGATATATTTTTATTTCGGTAAAAGA
TACACGGTAAAAATTTTCAAAATGTTTTTTCTTCGCCAAAAATAAGTTCT
TCAAAGTTGAAAAACTCTTCTTCGCAAAAGTCTTCATTTTCTTCTTCGTC
AATTTTTTTTATTGCGATTCTTAAATTTTCAGACTCAAGGATAATTGGCC
TAACAGAAAATGTATAACATGCTACCATTTTGTGTGCTGCATCAAGTAGA
AATTTAAATTTTGTACGTGGCAAATATTAAAAATTAGGGCCCTTAAGTAT
CTATATGTTAATCTCCGCCGGCTTGCGGAGAGAAATGAAAAATCTGTGCT
CTAAAGGCGAAACTTTGCAGTGGAAAATCTGCGCAATTTAAACGTTGCAG
AATTTGACAAGAATAAAATTACAGATTTTCGCAGCGTTGAAATTCAATGT
TATTTTCCGACCCTGATACGATTCCAAATGCTGAATAATCTACTCAGGAA
AGAGAATGGAAAATAAACTTTCTGAGCAATCTAGAGCGTAAAAAATCAAT
TTAATCTATTCTAGCTGAAGCTGTTCAACAAAATAATCTCAAAAAGACAT
TACCCATTTCATCACCGGAGTGGGAGGTAGAATTGAACCTGACAATACAT
GCAAATCATGTAAACACTGGAATACCAGGAGGGCATTGGTGTTCCGTACT
CCATATGACAAAAGGCGATGATCAAGGTTTGCATGGCGAGCGTACACCGG
CAATATTTTATAATAGTATTGATGGGAGACTACAGATTGCGTCCACTGTA
GGAAATGATTTCAACCATAAATTCGATCTTCCTATCGAGTTCAATAACCA
GTACCAAATAAAGATCAGCCAAAGATATAAAAACGGAGGCGTTTACGAGT
ATTCGATTGAAATAAATGGAGAAAAGGTTCACGCTGTTGATAATCTAAAA
GCACAACAATTTTATGGAGTCAAAGTTTACCTCGGAAACCCATGGAACTT
GCCATGTGTTGCAACAATAAGCTATATGAATATCGTGAATTTCCTGTAGA
TTTTGATCAGAGAATTTTCACGATAGCGTGACAGTACTGACTTCAAAGGA
GAATATTTTTGCGTCAAAAAATTATAGGGTTGCTTGTCATTCTCCATTAG
GGGCCACCTTTTCTTCTTTATAAGAGGTACTTTACGTGTGCGTCTACAAA
TTGCCTTCGTATCTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033652XLOC_033652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053328-exon-scaffold_228-1575043694:293434..293547TCONS_00053328-exon-scaffold_228-1575043694:293434..293547Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1575043694:292018..292066TCONS_00053328-exon-scaffold_228-1575043694:292018..292066Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1575043694:290281..290933TCONS_00053328-exon-scaffold_228-1575043694:290281..290933Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1510915933:293434..293547TCONS_00053328-exon-scaffold_228-1510915933:293434..293547Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1510915933:292018..292066TCONS_00053328-exon-scaffold_228-1510915933:292018..292066Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1510915933:290281..290933TCONS_00053328-exon-scaffold_228-1510915933:290281..290933Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1491911889:293434..293547TCONS_00053328-exon-scaffold_228-1491911889:293434..293547Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1491911889:292018..292066TCONS_00053328-exon-scaffold_228-1491911889:292018..292066Clytia hemisphaericaexon
TCONS_00053328-exon-scaffold_228-1491911889:290281..290933TCONS_00053328-exon-scaffold_228-1491911889:290281..290933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:290281..293547 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.24663	8.75782	3.82245	3.55214	0.0371187	0.0622846	0	0	0	0.056957	0	0	3.42235	3.02223	0.296304	0.142548	0.167967	0.454892	6.69744	9.88494	0.335658	0	3.86154	5.16525	0.641681	2.64152	0.289938	0.482209	0.701102	1.3163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top