TCONS_00053366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053366
Unique NameTCONS_00053366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053366 ID=TCONS_00053366|Name=TCONS_00053366|organism=Clytia hemisphaerica|type=transcript|length=197bp
CGACTTAATATTTTCCTTTGCAGCTATAAATAAATACCATCCCTATACTT
ACACGAATAATTCAATAAAACGtagcaacaaaaaaataattctaagCATA
CAGAGTGTCCCGTGAAAACTTCCTCATTATAGGTTTTACTTTTACATAag
tattcccgtttcatattGGGCCTATATTTCATACCAGGTCAGGTACT
Run BLAST on NCBI

transcript from alignment at scaffold_228:312504..312700

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053366 ID=TCONS_00053366|Name=TCONS_00053366|organism=Clytia hemisphaerica|type=transcript|length=197bp|location=Sequence derived from alignment at scaffold_228:312504..312700 (Clytia hemisphaerica)
AGTACCTGACCTGGTATGAAATATAGGCCCaatatgaaacgggaatactT
ATGTAAAAGTAAAACCTATAATGAGGAAGTTTTCACGGGACACTCTGTAT
GcttagaattatttttttgttgctaCGTTTTATTGAATTATTCGTGTAAG
TATAGGGATGGTATTTATTTATAGCTGCAAAGGAAAATATTAAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033680XLOC_033680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053366-exon-scaffold_228-1491911889:312504..312700TCONS_00053366-exon-scaffold_228-1491911889:312504..312700Clytia hemisphaericaexon
TCONS_00053366-exon-scaffold_228-1510915933:312504..312700TCONS_00053366-exon-scaffold_228-1510915933:312504..312700Clytia hemisphaericaexon
TCONS_00053366-exon-scaffold_228-1575043694:312504..312700TCONS_00053366-exon-scaffold_228-1575043694:312504..312700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:312504..312700 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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