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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053303 ID=TCONS_00053303|Name=TCONS_00053303|organism=Clytia hemisphaerica|type=transcript|length=1589bp atttttctccagAGAAGACGAAGGGTGTTGTTTGAGAAGGAACGACTCAG TCAAATTTTTTGTGATAATTTCTTTCACAGTGCCTTTAAAACTAAAACGC TTGATATCGCGTTTACTCGCGCCTCAAGTGAAAAGTAAAAAGTCTAAAAT GGTTGTAATTGAAGAAAAACCCTTTCGATGTGGTGTCGTTGAAGGATTCT ATGGACGGCCATGGACTTGTGGTCAAAGAAAGGAACTTTTCAACAGaATG CATAGATCAACAATGAACACTTACATTTACGCCCCAAAAGATGATATTAA ACACAGAGCTCTTTGGAGACAACCCTACACAAAAGAAGAAGAGATGAAAT TAAAAGACCTCATTGATGCTGCAAGTGCTGAAGAAATATTGTTTGTTTAT GCCATATCCCCTGGTCTTGATGTTACATTTTCTTCAGCTGCCGATATATC tgcattgaaaagaaaaatgaagcagGTCAGCAAATTAGGATGTAAGGCTT TCGCTTTACTCTTTGATGATATCAACCCAACATTGAAACCAGCTGATGCT GCGGTCTATTCTTCATCAGCTGAGGCCCAAGCTATGCTGACCAATGAGTT ATTTGAGCACATGAAATCTCAACAATTCTTGTTCTGCCCAACAGGTTAGT TCTTTACTTTCATTTGGCACACAGTAggctttttcaaacaaattagaTAT ATTAAGATTTTTATCTCTTTAATAACATCAAAGCTCTGTTCCTGTGAGAC GGTAAAGTATTAGGTTAGAGCTTCATGAATGCTGAATGGTTGAATTGTGT TCCTGTCATCTCAGtttctctaaattttgaaatgtgCAATAAGAATAAGG TATTGTATGATAGGCCTCTTGCTTACTGGAATTTTACTATGATGTTGCAC TTATTCTCAATTTGTCATACACTATTGAAATGTTATGTCTGGTAAAAATG GAGGCGATCAACAGAAGATACAAAGAAGATTTTGCTTTAGAAATTATTTC TCTGTGATAGCATTTTGTGCTATCTGTGCTCATATAATGTGATCTATTCT TAGCACACACCAAAACAACTGCACCATGCAGTATCGATGCAGATATGTTG TAATTGGAAACATCAGGAGAAAATTGTTGTTGAGTtagaaaaggtttttt ctttttccgaAATGAAAATCCAACCCCACGCCCCCTAAGCTTAGGAGTAT TTAAAAACAATAGGACTTAgtatatttaatttttattgcTCCAAGAGCTG AGTAGCTTATCAAAAGGCTCTTGGAGTTTGAATGTTCGTGTTGTCCctta atatttctaaaattttcatcaGAACTAGATAGTTGATTCTCCATCAAAGA TTCCATGAATTATACTGCTTTACTGAAGTTGGAAGACTTTTCAAAGTAGC GGATGCCTTCAAGCATAAGGAAAGTGTTTCATCACATGAAGCATTGTTCT TGTGTTTTAATTAACCTTTAGCCAGTGCTATTGTTTATTTGTTTAATGAA TCATCAGATGAAATCAGTAAGAATTTCAATTGCGCTAATAAAATAACACC TAGAAAGTTCATCATTTTAGCTAATGCAATGACTGCAGC Run BLAST on NCBI transcript from alignment at scaffold_228:494258..507791+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053303 ID=TCONS_00053303|Name=TCONS_00053303|organism=Clytia hemisphaerica|type=transcript|length=13534bp|location=Sequence derived from alignment at scaffold_228:494258..507791+ (Clytia hemisphaerica) atttttctccagAGAAGACGAAGGGTGTTGTTTGAGAAGGAACGACTCAG
TCAAATTTTTTGTGATAATTTCTTTCACAGTGCCTTTAAAACTAAAACGC
TTGATATCGCGTTTACTCGCGCCTCAAGTGAAAAGTAAAAAGTCTAAAAT
GGTTGTAATTGAAGAAAAACCCTTTCGATGTGGTGTCGTTGAAGGTATAA
TATAACTTCCTTATTTTGTGTCCTTtcctttttaaataaaactttGATCT
AATTGGGATCCACAGCTTATCATTGATCCCAAAGGAGCCTCAGAGAAATC
ATGACTGTATTGTTTGTCTAACTAGACCCCTTTTAGTTTTTgccgttttc
aattttttaggtatttttaattactttattttcaagatatatcatgacca
gacgatgtcaatcgaacgaatcgaacgtttaaaaattacgttcgattgta
ttcgattgcgttcaattgtattagattatGTTCAACTGATTCAATAGTAC
TAGATTTTATTCACTTTCGTACggtacttaagcgctcggccgcccacgct
atctaaaaagctctaacggggtaatccaatagaccttttttcaaagagga
cgtcctgttgaataatacTTACTTTTGGATACTTTTGGATGTGTTTGAGC
GTACCGCTCTGGCAAGAATCTTTTGATCCACACCACAATCTTCATTCAAT
CCATAATTCCTGAAGGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CACGACTTCGGATTATGTGATTGATTTGAATGGATCATCCAGCCCACAAC
ACAAGTTCagttttgttaatattttttgtttgtatttgtaTTAGTTTCCC
TAGaacttagactcaaatttagagtaattggtgtttctttttaattgtcc
aattatgtagtccagccataaaaacaatgatagagccatgcataattact
gtatcttgcatattgtaataattatgcatggttttatcattctttttctg
ctggactacataattattcaacaggggtggcctctttgaaaaaaggtctt
tttaatttaatcgcaatcaaactcatcgaacataatcgtaatcgaacgaa
atcaaatgtaattgacaatcaatcgaaccaattgaacatagtcaactatc
aatcgaaccaatctaaccttactcgaacgcacaatcgaacacaatcaaat
attacccaggattcggccgttcgattaagattcaattacgtttgacaatc
gaatcgcaattattcgatcgcgttcaattacgttcgattggtacGATTGC
GATTTTTAtttgaagttgttcgattgacaccgtctggtcatGATGATAAT
GTACATTAGCGTATACGTGTTTAATTAATAGACTGATAGATCTAGAACCA
TCAACCATCCTGTTGTATTGGGTGTGCAAGTTATAATCTGTTACCCCGTG
TGGACGACATGGATTTCCCGTAAcaattttacttttgaaaaacttcagga
ttTCCGTAACATTCGAGATTTTTTATGGGATTTTCCGATACTTGGCAAGA
AAATAATGCAAACTTTATGGATTTTACAATACTTGAggcaagaaaataga
gcaaatCTTATGGATTTTCTGATACATATGACTAATAATGAGGAAAAATC
CTGGATTttccaaaacctttttttaaatttctcaggatttccaagtgaaa
aaaaatccaaaaaaccccGTCATCCACAGGGGGGGTGGACAACGGCGGAA
TTCTgtggcaaaatgttttttttgaaatccctggatttccaatacaaaat
caattttttggtggaaaaatctggaatttacgatactttttcaaaatttt
gacaaattatgtgtaatttccaagggttcaaataaaaaattgagcgGAAT
TTCCAAAGCACGTTGAAATATCAACTGGATTTCCGAGTgcttttttatct
gaaaattcctGTCATCCACCCCctatatcaaattttttctggaagagccc
aatggtTTTTTCTGGAAAGGCCTATTTCTAGTGTCAATCGCCCCAATAGC
ATTTTATAATGACATCACGCCTTACATGAAGGGCAGTTGTAAAAATCCCA
CTCTTCATCATAGCAccttatttatttgttttaatcCTTGATCCTAAGGC
GTAggctttttctcatcttcaattttctaaagaaagcgggaatttgatgc
attTGATGATATTTGAATAATTGGTGCGAAAAAGTGAAACGTGCAAAAGT
TGTAATATGGTAAATTCTTTGTTATTGATATAGGAGTGTTAGTCTACACT
GAccgaaaatcttgtgtttacttgCTGTATCTCATTTTTCAACTACTCTT
GAGTTCTGGCAGTGGGATCTTAGTGAGGGAAGTTAATCTCAAcatttctt
gtaaaatgttGGTATAAATCAAGGTGTTGCTAAAGATCCCATTTCTTTTA
AAGGCTATTCCAGTCTTCATGTTATTTCACTTATGATTTATATTACTATT
ATTGTTTGTTACTGTTACTTTCAGGATTCTATGGACGGCCATGGACTTGT
GGTCAAAGAAAGGAACTTTTCAACAGGTAGGATTGGCAATTTCTTCActt
attgaataaaaaacataatttttgcaACTCATAGCTGTATGTTGATGTTT
ATTTTGTGGAAATTTAAAGATACAGTATTctatttaaaaatagaatgtcT
CATAGTTGAGATTTTCTTGTTGAAGTGCATTCTTTTCCAAGATTGTTGTT
AtatctttttcatcattttttcaactttagaATGCATAGATCAACAATGA
ACACTTACATTTACGCCCCAAAAGATGATATTAAACACAGAGCTCTTTGG
AGACAACCCTACACAAAAGAAGAAGAGAGTATGTAAAATGAATAACGTGC
ATGAATACTAAAtggattttcagaattttttgttttttatctacTGTAAC
TGTGCTATAAAATCTTTTGGGTTATTTTTCAGCAAAGAGAAAACTCAAAT
CTAGTCTTCTCAGATCTAAttttattaagaattttatgtaCAATCATATA
TTTGAATACCTTTTAATGGGAACTAACTTTTTAACAAACTTTTCAAGTGC
AGTGAAAATGGGCTAGAGAAATTTTATTCAGaatgaaagatttatttttt
tgaaattaattctAAAGAAGTCGAAAACAACCATAATTGCCAATTTTTTA
ATCTTAGTGAAATTAAAAGACCTCATTGATGCTGCAAGTGCTGAAGAAAT
ATTGTTTGTTTATGCCATATCCCCTGGTCTTGATGTTACATTTTCTTCAG
CTGCCGATATATCtgcattgaaaagaaaaatgaagcaggtaaatttgagt
tttattgaaaatcgaGAAGCAAAATTGAAGTGACCTTACTCTTTGACACA
AACATCAAAGTATAGTTccttaaactttttgaaaggtAAATTTCAGTAGA
AAATATGCAGAATGAGGTCCTTGTTTGCCAAAGTTGATTGAGATTTTTGT
GAATAAAAATTCActatcattaatatttttttagtaGGAGtagcaatatt
ttagaaaaaatgtgTATCATATTATCTCCATAGACAATATTGGTTCAAAA
ATTGGTATTTGTTAACAACACTACTGGGTCAGAAACCGTTCGATTCGGAC
ACACGAACGCTTTTCCATGCGTGACGAACGGCGAatgcttatgatttttt
ttaataaaagcgttcgtcacgaacgggaaaccgtttgtgacgaacggttT
TTATAGAAAACCGTTCGTGAAGAACGCTTTAAAAACTTNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNtaaaaataatttgatttttctttgact
ttaaacggagtcactgagacaggggtgtataaggaaagtttaataataat
taaaatcatttgatTATTCTTTGACCTCAGTCggagtcactgagacaggg
ttgtaaggAAAGTTTAATCTACTAAGGATGAgaatcatttcattttattt
tgacttaaaaCGGGGTCACTGAGACATGgtgtaaaaaaagtttatttgat
actgattaaaatcatttgacttttctttaacttttacaTTACTTGATCGG
ATTCTTCGATTTGGGAGGGCTTGGCTTTTAGGCTATAATTTCAGCCACGT
TGTAGGCTGTACACATCCCTTCTGATACGAGTTGTTATAGGAGAAGCCGT
ATTTCTGCTCTCTGTGAAGAAAAGGAAGACAACGCAGTGTCATTTTATCA
AGATAAAAAAGACCGCCATTCTTGGGCAACATTTTCTCTCcttttttgca
acatttaaaagaaaaagaagacattccaaTGCTTATTACGTGATAGAAAT
CTCCCACGCTCTAAGAAAAGctctgattttcatttttacaatGTATATAA
ccttttcttaaaattaaaGAAGGACGGAAGTAGAAAAACGTGCAAGTTTT
CGTACTAAACGCTAGTGACAAACGCTACCTTCTTAAAACGCTTGTTGCAT
AAACGAGTCTACGTTTATAACGAACGCTTTGGAAAAGAAAGTCGCTCGAA
AAGCATTAGTAAtagtcattgcattgtttttctaaagattttCGTGTTCG
AATGTTTTTGNGTTTGTTGCATAAACGAGTCGAATTCTACGTTTATAACG
AACGCTTTGGAAAAGAAAGTCGCTCGTAAAGCATTAGTAAtagtcattgc
attgtttttctaaagattttcgtgttcaaatgtttttgaataTGTACAAA
TTAAAACAATCGAAACTAGAGAACGTAAATTTAGAACGGGATCTCTCCTT
CAAAAATGGTGGGGACTGATAACTTTTCAccatgttttgtttttggagAA
CAAATCTCACATAAACCCCTGTCTCTTACTCTATTCTTAATATCGAATGC
TTTCTCCGTAATTTTAtgagtacatgttttttataagtattGCTATCGCT
ATTGCTATTGCTATCTAGGCTCATGtgtatggcaaaaatttaagagcTTT
TCAGAATTTGTTTGCTTTTGgctggattttcgaaatttctctaaaatttt
gcttaggatataagcatccttcaaagcatttttcagctttgtaaatctct
cgatctaagcatttccgagccagcttttggatttttgaatgcttataaaa
aattaattgtATTTCTAAGATCGCTTTTATtgaatcgcttttttcgaaTC
GCTTTCTTTCGAATCGCTTTCTTTGCAACTTTTAAGagagtttcaaagat
cacttttatcaaatcgcttcatttgtaacttttaagagtgtttcaaagat
cacttttatcaaatcgctttcttcgtaacttttaagagtgtttctaagat
cacttttatcaaatcgcttttttcgaaacttttaagagtgtttcaaagat
caNTTTAAAGttatccttttgaaaaaaacattaatgaaagaagtaactca
ataacTAAATTCATTCCCCGTTCCATAAATCCAAGTACATGCTAAgtaaa
ttttcttagaaatctTTCCCATTAAAATCCATTCGTTgcgtttgtgacga
acggttNgtttcaaagatcacttttatcaaatcgctgttttcgaaacttt
tagagtgtttcaaagatcacttttatcaaatcactttcatcgtaactttt
aagagtgtttctaagatcacttttatcaaatcgctttcttcgtaactttt
cagagtgtttctaagatcacttttatcaaatcgctgtTTNatttctcaaa
tttttgtaaGCGTTCTTCACGAACGCTTTTCTTTTTAAgccgttcgtcac
aaacgggttaaaaagaaaaagcgttCGTCGCAAACGGTCGCAATCAAACT
TTTTTGTAGGGCGTTCGCGAAGGATGCAAAAGCATTCGTCGCGAACGGTT
AACCCGTTCGTCGCGAATGGAAAAGCGTTCGTGTGTCCGAATCGAACGGT
TTCTGACCCAGTAGTGCAAAGGGGCAATGTAAACAGCAAATTTTAGCCTA
CATCACCAATCATCACCAATTTTAAACTTGTTGAGCTTTTTGCGTATTGA
GACCCCCATCCTGCACATTCCTCATGCCAAATTATTATAAATAATGAATA
TCTTTTTCTGCTCAATTCAGGTCAGCAAATTAGGATGTAAGGCTTTCGCT
TTACTCTTTGATGATATCAACCCAACATTGAAACCAGCTGATGCTGCGGT
CTATTCTTCATCAGCTGAGGCCCAAGCTATGCTGACCAATGAGTTATTTG
AGCACATGAAATCTCAACAATTCTTGTTCTGCCCAACAGGTTAGTTCTTT
ACTTTCATTTGGCACACAGTAggctttttcaaacaaattagaTATATTAA
GATTTTTATCTCTTTAATAACATCAAAGCTCTGTTCCTGTGAGACGGTAA
AGTATTAGGTTAGAGCTTCATGAATGCTGAATGGTTGAATTGTGTTCCTG
TCATCTCAGtttctctaaattttgaaatgtgCAATAAGAATAAGGTATTG
TATGATAGGCCTCTTGCTTACTGGAATTTTACTATGATGTTGCACTTATT
CTCAATTTGTCATACACTATTGAAATGTTATGTCTGGTAAAAATGGAGGC
GATCAACAGAAGATACAAAGAAGATTTTGCTTTAGAAATTATTTCTCTGT
GATAGCATTTTGTGCTATCTGTGCTCATATAATGTGATCTATTCTTAGCA
CACACCAAAACAACTGCACCATGCAGTATCGATGCAGATATGTTGTAATT
GGAAACATCAGGAGAAAATTGTTGTTGAGTtagaaaaggttttttctttt
tccgaAATGAAAATCCAACCCCACGCCCCCTAAGCTTAGGAGTATTTAAA
AACAATAGGACTTAgtatatttaatttttattgcTCCAAGAGCTGAGTAG
CTTATCAAAAGGCTCTTGGAGTTTGAATGTTCGTGTTGTCCcttaatatt
tctaaaattttcatcaGAACTAGATAGTTGATTCTCCATCAAAGATTCCA
TGAATTATACTGCTTTACTGAAGTTGGAAGACTTTTCAAAGTAGCGGATG
CCTTCAAGCATAAGGAAAGTGTTTCATCACATGAAGCATTGTTCTTGTGT
TTTAATTAACCTTTAGCCAGTGCTATTGTTTATTTGTTTAATGAATCATC
AGATGAAATCAGTAAGAATTTCAATTGCGCTAATAAAATAACACCTAGAA
AGTTCATCATTTTAGCTAATGCAATGACTGCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053303-exon-scaffold_228-1491911889:494258..494451 | TCONS_00053303-exon-scaffold_228-1491911889:494258..494451 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1510915933:494258..494451 | TCONS_00053303-exon-scaffold_228-1510915933:494258..494451 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1575043694:494258..494451 | TCONS_00053303-exon-scaffold_228-1575043694:494258..494451 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1491911889:502382..502433 | TCONS_00053303-exon-scaffold_228-1491911889:502382..502433 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1510915933:502382..502433 | TCONS_00053303-exon-scaffold_228-1510915933:502382..502433 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1575043694:502382..502433 | TCONS_00053303-exon-scaffold_228-1575043694:502382..502433 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1491911889:502638..502735 | TCONS_00053303-exon-scaffold_228-1491911889:502638..502735 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1510915933:502638..502735 | TCONS_00053303-exon-scaffold_228-1510915933:502638..502735 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1575043694:502638..502735 | TCONS_00053303-exon-scaffold_228-1575043694:502638..502735 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1491911889:503065..503195 | TCONS_00053303-exon-scaffold_228-1491911889:503065..503195 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1510915933:503065..503195 | TCONS_00053303-exon-scaffold_228-1510915933:503065..503195 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1575043694:503065..503195 | TCONS_00053303-exon-scaffold_228-1575043694:503065..503195 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1491911889:506678..507791 | TCONS_00053303-exon-scaffold_228-1491911889:506678..507791 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1510915933:506678..507791 | TCONS_00053303-exon-scaffold_228-1510915933:506678..507791 | Clytia hemisphaerica | exon |
TCONS_00053303-exon-scaffold_228-1575043694:506678..507791 | TCONS_00053303-exon-scaffold_228-1575043694:506678..507791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_228 | supercontig | scaffold_228:494258..507791 + |
Blast
BLAST of TCONS_00053303 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 2.899e-54 Identity = 95/178 (53.37%), Postives = 125/178 (70.22%), Query Frame = 2
Query: 173 FRCGVVEGFYGRPWTCGQRKELFNRMHRSTMNTYIYAPKDDIKHRALWRQPYTKEEEMKLKDLIDAASAEEILFVYAISPGLDVTFSSAADISALKRKMKQVSKLGCKAFALLFDDINPTLKPADAAVYSSSAEAQAMLTNELFEHM-KSQQFLFCPTG*FFTFIWHTVGFFKQIRYI 703
F CGVVEGFYGRPW QRKELF R+ + +NTY+YAPKDD KHR WR+ Y+ EE +L LI AA EI F+YAISPGLD+TFS+ ++S LKRK+ QVS+ GC++FALLFDDI+ + AD V+SS A AQ +TNE+++++ + + FLFCPT TF + V +R +
Sbjct: 60 FLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTV 237
The following BLAST results are available for this feature:
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