TCONS_00053373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053373
Unique NameTCONS_00053373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length211

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053373 ID=TCONS_00053373|Name=TCONS_00053373|organism=Clytia hemisphaerica|type=transcript|length=211bp
GTGTGATGTATTAAAATCCTGATTAGTTTAAAAGAGCCAGtgctaaataa
aatataaaagtcAGATGAAGCCAGTAAAATCTAATCTCAAATGAAAAGGG
TAAAAATACCGAAAGTTTCTTGCATCACAGGCTCTTGCTcaataataatg
ttttaatgTGTTGCGggtattgataaaaatattttgcaatagaTTTGTCA
TTTTAAATGCA
Run BLAST on NCBI

transcript from alignment at scaffold_228:508624..508834

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053373 ID=TCONS_00053373|Name=TCONS_00053373|organism=Clytia hemisphaerica|type=transcript|length=211bp|location=Sequence derived from alignment at scaffold_228:508624..508834 (Clytia hemisphaerica)
TGCATTTAAAATGACAAAtctattgcaaaatatttttatcaataccCGCA
ACAcattaaaacattattattgAGCAAGAGCCTGTGATGCAAGAAACTTT
CGGTATTTTTACCCTTTTCATTTGAGATTAGATTTTACTGGCTTCATCTg
acttttatattttatttagcaCTGGCTCTTTTAAACTAATCAGGATTTTA
ATACATCACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033687XLOC_033687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053373-exon-scaffold_228-1491911889:508624..508834TCONS_00053373-exon-scaffold_228-1491911889:508624..508834Clytia hemisphaericaexon
TCONS_00053373-exon-scaffold_228-1510915933:508624..508834TCONS_00053373-exon-scaffold_228-1510915933:508624..508834Clytia hemisphaericaexon
TCONS_00053373-exon-scaffold_228-1575043694:508624..508834TCONS_00053373-exon-scaffold_228-1575043694:508624..508834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:508624..508834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.8289	4.53847	5.47547	11.9608	8.37405	11.8544	28.7655	15.1274	17.9388	16.6687	13.7039	6.92065	6.39426	10.9232	33.2001	20.5291	34.3144	42.1782	22.788	13.3185	6.09677	5.44122	40.8784	47.7815	11.0297	11.2376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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