|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053305 ID=TCONS_00053305|Name=TCONS_00053305|organism=Clytia hemisphaerica|type=transcript|length=3499bp CTGTGGTCAAATATTGCAAAAGATCTTGGCTAAACCactgttatttttac cccctaTAACAGTGGATCTGTTCAAGATAAATGtatcatttcaaaaatta aaacattttgttttgttttaaaagttttctgaGGTTCTTTTGAAAACACA ATTTCTGGGGGTGGTAAATTGATGCATTCATCTTTCTATATTATGtgtca ccaaaatttctttactAAGTCTTGTAACATCTTGCAGTTGACAGAACAAA CCAATATTACAAAGAAATTTTGGTGTCAATTGAATGAATTAAAAGAGAAT TGAAAGTTATACATTCACATTAAAAAAGGTCATTTTAGTTCTCTGAAAac agtttaaattttctttgacagaaaaactttcaatccTCTTTCTTATTACA TATTGCCTCTTTGAATACtgtctaaaagaagaaaatgattggCAAAAAAA CAGTACCCAAGAGGTAAAGGCATCCGCTACTCCTGCTCATAAAAACTGAA TTACTTGTGTGAGATTTTTCTTCAAGCAATTTGATTGAGGATCAACTCTt agtatatttttatttttatattttaaacatatttttagTGCTCTTgaagt atttttttgtttagaaaACTCAAGTCTTTCAATAACTTCTTGCATGAATA TTAAAACCTGAAAGTCTAATAATAGAATCAAacaaacttgagttttcaat ACAAAGTAATGCTTCATTTTCGTTCCTCTTCAAAGTTTTTACCATGTTTG CCCAATTTCTTTTTCTACAGAATATTGCAAGACACGAGCATTGCCAACTG TAAGAAAATCTGAATATTTGAATACACTTGGTCAGAAGCTCCATCCGGAT ATTGATGTCATGTGGACAGGTGATAAAGTCATTCCTGAAGTCATAACCAA GGAATCCATTAAAGAATTGGGTGAAGTTCTCCAAAGAAAGCCAGTCATTT GGGACAACATACATGCTAATGATTACGACCAAAGACGTGTTTTCCTTGGA GGCTACCATGGACGACCTGTAGAATTGTACCCTTACTTGAATGGAATTCT TACCAATCCTAATTGTGAATTTGAAGCAAACTTCATTGCTATTCATACTC TTGGTACTTGGTGTCGTATTGCGAACAGTGTTCAAGATAGTTCTTCCTTT GATGTTCAAATGGTAGATCTTTCAGACGAAGTCTGTGTTACACCACCTGA AACACCAGTTGTCCCTGATGTACCCGAGGTTGATTGTGAAATGTCAGATG AATTGCTCCCATCCCTAACAGCAGCTGATGTGACCTCAGTTATTGCTTCA TATAATTATAGCGAGGCTCTCAAGTTAGCTCTTGAGGAATGGTTGATTGA ATTCAATTTGAATAAGAAAGCTCCTTTAAAATCATATTCCAAACGCAACT TGAAGACTCAAGTTATCAATGGACAAAGTGTTTTGACAGCTAAATCCTAT GACTTGGATGTTATTGGAACAGCAAAAGAAaccattgaaacaatgaaaga aGACAAATCTAAATTGATGGCTCTTAGTCACGAAAACTTACAATTGCTGA CGGAAATGTTCTGTTTACCTTATGAACATGGTACGAAAGGAAATCAACTT CTTTCTGATTTCGAATGGCTGCTTGAAAATGTTTCCGATATCTATGAAGA GCCCCCAAGCAAGGAAAaggtATCCAAATGGTTTGAAAAGCTATTGCAAT GTGACGAAAAATCTCAAGAAGTCTACAATCTTTTTACAAACTTCAGTAAG ATTCCAAACGAAGCTATCCTTTACGATTTATACCCCTACATCTGGGACGT GAAAGAAGTTGTATCTGCCCTCGAGTCGTATGTACACTGGCTCAGTGATT CGATTGCTTGCAACTTGTCAATCGATACCATAAAGCGTAGTCACAACGGA CTTAACATTGCCATAAATAAACTTCCTATCATGAATGAATTTGTTGAACC GTGGCATATTCGTTACATTGGAGGGTTGACCGGTGCACTGCATAGAATGC TTCCCTTTCAAGGTGGTTATATATACTTGGGACAAGCCCCTGACATCCCG ACATCAGCCGTCTTGAAAACCAGATCATACTCACCATCGGACAAggaCTC TTTGTATCGTTTTAATCGTGGCGTTGTCGATAAATCAGAAGTCCCGATGG AAACAACAGAAGATGACATCGCATTCGATTACGATATCGGAGTATTCTCA TCTTTTAATTCTAAAACGTTGTTTTTAATCGAAGATGATGAAAAGGAACT TTGCGGATACGTTGCCGCTGTATCAGATAATAAACAGTTTGTTGATCATA TTACAGATAAATGGTTACCCGAAGTTAATACTAAATACTCTGAAACGAAA ACTGATCGAAAACTACCACACGTGGATAAACCAGACGAATGGAAAGCTCC AAATTCTtcacattttattttgaaactggACTCGAAAGTTTACGAGGAAT GTATATTGAAACGAGTTATTAATACGGTACTGTCAGTGTTGAAAACGTCT GGAGCAACGACAGTATATCATAAGCTTGACGGTGTCACCAATCAAGACTT TTTCCTGGAACTTGGATTTTTCCCTGTACAAGGGGACGAGAAGATGTTTT GGCGGTCTTTATGATTCCCATGATGTGTGAGGTTTTGGCCTTATAGGTTG ATATTTTTCGGTTCCAAGTTAAAACAGCTTTCATCATGTTGTTTTAAAtc caaatttttaaatactaaatTTACTCTAAAATGTGTAACTAAGGCcttca aaaagatttaaaaaacggcgttgaaatgttttcattcaagTCCAATTTGA GTCAAAAGAGTAAATTAGAAAATCTAAAAACTACCGATGCTAATTTAATC ACAGTAtcctttcattttatttttataacgactaattttttagttgaaat tttttttaaattgagagACACGTCTATTTGtgttatttttatcttttata tttCCGTTTTTTCATTGCCTAATTTTAAGACAGTCCCATACTCTCCATTG TAGTATGATTTAGGATGAAATGTCTTTTTCCCCCAAGATAATTGTTCCCG TCACATCAGTGACATTTTCTGCGGGTAACTTTTAAATTTCTATGAATTAA TCCTATGCAATTTATTTTGCAACGAGAGGATAGGAGTGTCTTTAAATCTC TGGGTAAAAGTAATTTAAAAGAATTATTGATTATATAAGGTGTTACATTA TTTTGtacattgtgaaaaaaaaacaagttttttgtATATACTTCAATTTA CTCTTGTTAAAGAAACCATTAGACCACTAGATAAAGATATAAGGAATTAT AAAAAACCGAATTTAATTTCAGAGTTGTAGCTAGAAAGCGAGATTGTTTA ACTCGACAATCCTTACTCCATTTTAAATTCTGTTTTGGATATTCCGTCGT CTCTAGTTGACGACttgtaaaaaatcaaattgtatataaatttataaatt aagtttattactttttttgaaggaaaatatacAATGTTTAAATTGAATG Run BLAST on NCBI transcript from alignment at scaffold_228:509252..516253+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053305 ID=TCONS_00053305|Name=TCONS_00053305|organism=Clytia hemisphaerica|type=transcript|length=7002bp|location=Sequence derived from alignment at scaffold_228:509252..516253+ (Clytia hemisphaerica) CTGTGGTCAAATATTGCAAAAGATCTTGGCTAAACCactgttatttttac
cccctaTAACAGTGGATCTGTTCAAGATAAATGtatcatttcaaaaatta
aaacattttgttttgttttaaaagttttctgaGGTTCTTTTGAAAACACA
ATTTCTGGGGGTGGTAAATTGATGCATTCATCTTTCTATATTATGtgtca
ccaaaatttctttactAAGTCTTGTAACATCTTGCAGTTGACAGAACAAA
CCAATATTACAAAGAAATTTTGGTGTCAATTGAATGAATTAAAAGAGAAT
TGAAAGTTATACATTCACATTAAAAAAGGTCATTTTAGTTCTCTGAAAac
agtttaaattttctttgacagaaaaactttcaatccTCTTTCTTATTACA
TATTGCCTCTTTGAATACtgtctaaaagaagaaaatgattggCAAAAAAA
CAGTACCCAAGAGGTAAAGGCATCCGCTACTCCTGCTCATAAAAACTGAA
TTACTTGTGTGAGATTTTTCTTCAAGCAATTTGATTGAGGATCAACTCTt
agtatatttttatttttatattttaaacatatttttagTGCTCTTgaagt
atttttttgtttagaaaACTCAAGTCTTTCAATAACTTCTTGCATGAATA
TTAAAACCTGAAAGTCTAATAATAGAATCAAacaaacttgagttttcaat
ACAAAGTAATGCTTCATTTTCGTTCCTCTTCAAAGTTTTTACCATGTTTG
CCCAATTTCTTTTTCTACAGAATATTGCAAGACACGAGCATTGCCAACTG
TAAGAAAATCTGAATATTTGAATACACTTGGTCAGAAGCTCCATCCGGAT
ATTGATGTCATGTGGACAGGTAAATTTAGGAATTTCCTTTAGACTTGATT
GCTCGGATTTCTAGTTAAACTCTTGATTTAGCTTGATTCATTGTCTCACT
TCATTCTGTCAATAGAAAATCACTTTAAAGTTCTTCTAGTTTTCAACAAA
TGCTTCTAATATTTTCCTTCAGGTGATAAAGTCATTCCTGAAGTCATAAC
CAAGGAATCCATTAAAGAATTGGGTGAAGTTCTCCAAAGAAAGCCAGTCA
TTTGGGACAACATACATGCTAATGATTACGACCAAAGACGTGTTTTCCTT
GGAGGCTACCATGGACGACCTGTAGAATTGTACCCTTACTTGAATGGAAT
TCTTACCAATCCTAATTGTGAATTTGAAGCAAACTTCATTGCTATTCATA
CTCTTGGTACTTGGTGTCGTATTGCGAACAGTGTTCAAGATAGTTCTTCC
TTTGATGTTCAAATGGTAGATCTTTCAGACGAAGTCTGTGTTACACCACC
TGAAACACCAGTTGTCCCTGATGTACCCGAGGTTGATTGTGAAATGTCAG
ATGAATTGCTCCCATCCCTAACAGCAGCTGATGTGACCTCAGTTATTGCT
TCATATAATTATAGCGAGGCTCTCAAGTTAGCTCTTGAGGAATGGTTGAT
TGAATTCAATTTGAATAAGAAAGCTCCTTTAAAATCATATTCCAAACGCA
ACTTGAAGACTCAAGTTATCAATGGACAAAGTGTTTTGACAGCTAAATCC
TATGACTTGGATGTTATTGGAACAGCAAAAGGTAAGTCGAAGCTATCTAA
TTCAAAATTATTATATGTAGATGATCTCTTTGTTTCTGCTCTCAAAAAAA
CTGCAAGATATTTTATAGATTTAGATAATAAGGGCTCTCAGTGGATCTTC
AATTTGAGCAATTGCGCAATTTTTTCCCAATATTCAGGCATTCATGCAAT
CTTTTTTTCGCAATAGACCTTAtaggagttttttatttttctaaaaaagc
gatggattgtgggattgtgggattgtttctaGTGTATAACAATTGAATTC
CCTCAAGGAATTCCttgagatttctattgtaatacactcgaaacaatccc
acaatgcatcgcttttttagaaaaaaactctAAGGTCTATTCACACAATT
TCTGTTCACGGAAAGTTTTCCAAGTCACACATCCACGCATCTCTTTTAAA
GTTTTAACACATTCACACAAGTTAAAGGATATTGTCAGTTTTTgcatatt
tcaatgttttttctcATTCTCTAGAAaccattgaaacaatgaaagaaGAC
AAATCTAAATTGATGGCTCTTAGTCACGAAAACTTACAATTGCTGACGGA
AATGTTCTGTTTACCTTATGAACATGGTACGAAAGGAAATCAACTTCTTT
CTGATTTCGAATGGCTGCTTGAAAATGTTTCCGATATCTATGAAGAGCCC
CCAAGCAAGGAAAaggtaattgtttttttttgcatctttatccattttgt
cAGAATTTTTCTTTGCAACCATTGTTCAAGACCAAACAAAGTGGATTAGG
CTTTGAAAATCTACCAGCACTacgattttttctatttttcaggtATCCAA
ATGGTTTGAAAAGCTATTGCAATGTGACGAAAAATCTCAAGAAGTCTACA
ATCTTTTTACAAACTTCAGTAAGATTCCAAACGAAGCTATCCTTTACGAT
TTATACCCCTACATCTGGGACGTGAAAGAAGTTGTATCTGCCCTCGAGTC
GTATGTACACTGGCTCAGTGATTCGATTGCTTGCAACTTGTCAATCGATA
CCATAAAGCGTAGTCACAACGGACTTAACATTGCCATAAATAAACTTCCT
ATCATGAATGAATTTGTTGAACCGTGGCATATTCGTTACATTGGAGGGTT
GACCGGTGCACTGCATAGAATGCTTCCCTTTCAAGGTGGTTATATATACT
TGGGACAAGCCCCTGACATCCCGACATCAGCCGTCTTGAAAACCAGATCA
TACTCACCATCNGCAAGCTCCTGACATCCCGACATCAGCCGTCTTGAAAA
CCAGATCATACTCACCATCGGACAAggtaaatatatgaatgttttCCGTG
GCTGTCCTCTCTACTTTATTGGATTTCAGGTTCACAGACTGCTAAACTAC
ATTAATCCAGACCCAGATATACagatatttttcgattttcttattatttt
ggaGGGATACATTTCACAAACTTTCTGCCAGGGAAATTTGACtgaaacat
tttgaaatgaaaatgcaaGAAACAAAACTTAGTCTATTTTACCCCTTACT
ATacgaaaacaattaaaagctttttggacctaccccggtggggtggaggt
cctataaattaacccgtgttcgttagttagttagttcgttcgttcgttag
ttaccaacttttctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTGGCTGTCCTCTCTACTTTATTGGATTT
CAGGTTGACAGACTGCTAAACTACATTAATCCAGACCCAGATATACagat
atttttcgattttcttattattttggaGGGATACATTTCACAAACTTTCT
GCCAGGGAAATTTGACtgaaacattttgaaatgaaaatgcaaGAAACAAA
ACTTGGTCTATTTTACCCCTTACTATacgaaaacaattaaaagctTTTTA
ATTTCTAGTGttgaattttgatgaattgcatcctttttataattttagga
CTCTTTGTATCGTTTTAATCGTGGCGTTGTCGATAAATCAGAAGTCCCGA
TGGAAACAACAGAAGATGACATCGCATTCGATTACGATATCGGAGTATTC
TCATCTTTTAATTCTAAAACGTTGTTTTTAATCGAAGATGATGAAAAGGA
ACTTTGCGGATACGTTGCCGCTGTATCAGATAATAAACAGTTTGTTGATC
ATATTACAGATAAATGGTTACCCGAAGTTAATACTAAATACTCTGAAACG
AAAACTGATCGAAAACTACCACACGTGGATAAACCAGACGAATGGAAAGC
TCCAAATTCTtcacattttattttgaaactggACTCGAAAGTTTACGAGG
AATGTATATTGAAACGAGTTATTAATACGGTACTGTCAGTGTTGAAAACG
TCTGGAGCAACGACAGTATATCATAAGCTTGACGGTGTCACCAATCAAGA
CTTTTTCCTGGAACTTGGATTTTTCCCTGTACAAGGGGACGAGAAGATGT
TTTGGCGGTCTTTATGATTCCCATGATGTGTGAGGTTTTGGCCTTATAGG
TTGATATTTTTCGGTTCCAAGTTAAAACAGCTTTCATCATGTTGTTTTAA
AtccaaatttttaaatactaaatTTACTCTAAAATGTGTAACTAAGGCct
tcaaaaagatttaaaaaacggcgttgaaatgttttcattcaagTCCAATT
TGAGTCAAAAGAGTAAATTAGAAAATCTAAAAACTACCGATGCTAATTTA
ATCACAGTAtcctttcattttatttttataacgactaattttttagttga
aattttttttaaattgagagACACGTCTATTTGtgttatttttatctttt
atatttCCGTTTTTTCATTGCCTAATTTTAAGACAGTCCCATACTCTCCA
TTGTAGTATGATTTAGGATGAAATGTCTTTTTCCCCCAAGATAATTGTTC
CCGTCACATCAGTGACATTTTCTGCGGGTAACTTTTAAATTTCTATGAAT
TAATCCTATGCAATTTATTTTGCAACGAGAGGATAGGAGTGTCTTTAAAT
CTCTGGGTAAAAGTAATTTAAAAGAATTATTGATTATATAAGGTGTTACA
TTATTTTGtacattgtgaaaaaaaaacaagttttttgtATATACTTCAAT
TTACTCTTGTTAAAGAAACCATTAGACCACTAGATAAAGATATAAGGAAT
TATAAAAAACCGAATTTAATTTCAGAGTTGTAGCTAGAAAGCGAGATTGT
TTAACTCGACAATCCTTACTCCATTTTAAATTCTGTTTTGGATATTCCGT
CGTCTCTAGTTGACGACttgtaaaaaatcaaattgtatataaatttataa
attaagtttattactttttttgaaggaaaatatacAATGTTTAAATTGAA
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00053305-exon-scaffold_228-1491911889:509252..510120 | TCONS_00053305-exon-scaffold_228-1491911889:509252..510120 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:509252..510120 | TCONS_00053305-exon-scaffold_228-1510915933:509252..510120 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:509252..510120 | TCONS_00053305-exon-scaffold_228-1575043694:509252..510120 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1491911889:510274..510882 | TCONS_00053305-exon-scaffold_228-1491911889:510274..510882 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:510274..510882 | TCONS_00053305-exon-scaffold_228-1510915933:510274..510882 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:510274..510882 | TCONS_00053305-exon-scaffold_228-1575043694:510274..510882 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1491911889:511376..511566 | TCONS_00053305-exon-scaffold_228-1491911889:511376..511566 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:511376..511566 | TCONS_00053305-exon-scaffold_228-1510915933:511376..511566 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:511376..511566 | TCONS_00053305-exon-scaffold_228-1575043694:511376..511566 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1491911889:511694..512068 | TCONS_00053305-exon-scaffold_228-1491911889:511694..512068 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:511694..512068 | TCONS_00053305-exon-scaffold_228-1510915933:511694..512068 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:511694..512068 | TCONS_00053305-exon-scaffold_228-1575043694:511694..512068 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1491911889:512127..512177 | TCONS_00053305-exon-scaffold_228-1491911889:512127..512177 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:512127..512177 | TCONS_00053305-exon-scaffold_228-1510915933:512127..512177 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:512127..512177 | TCONS_00053305-exon-scaffold_228-1575043694:512127..512177 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1491911889:514850..516253 | TCONS_00053305-exon-scaffold_228-1491911889:514850..516253 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1510915933:514850..516253 | TCONS_00053305-exon-scaffold_228-1510915933:514850..516253 | Clytia hemisphaerica | exon |
TCONS_00053305-exon-scaffold_228-1575043694:514850..516253 | TCONS_00053305-exon-scaffold_228-1575043694:514850..516253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_228 | supercontig | scaffold_228:509252..516253 + |
Blast
BLAST of TCONS_00053305 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2) HSP 1 Score: 181.415 bits (459), Expect = 1.403e-46 Identity = 102/244 (41.80%), Postives = 138/244 (56.56%), Query Frame = 2
Query: 740 YHVCPISFSTEYCKTRALPTVRKSEYLNTLGQKLHPDIDVMWTGDKVIPEVITKESIKELGEVLQRKPVIWDNIHANDYDQRRVFLGGYHGRPVELYPYLNGILTNPNCEFEANFIAIHTLGTWCRIANSVQDSSSFDVQMVDLSDXXXXXXXXXXXXXXXXXXXXXMSDELLPSLTAADVTSVIASYNYSEALKLALEEWLIEFNLNKKAPLKSYSKRNLKTQVINGQSVLTAKSYDLDVIGT 1471
+ CP TEYC T P V +S YL T+G+KL P I+V+WTG KV+ + I ESI+E+ ++++R PVIWDNIHANDYDQ+R+FLG Y GR EL P L G+LTNPNCEFEAN++AIHTL TW + S + DV M D D + SDE D+ + + Y+ ALKLAL EWL EF + + + + K V++G ++ A S + + T
Sbjct: 212 FLFCP----TEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK---SNMNGVRKDVVMTDSEDSTVSIQIKLENEG---------SDE--------DIETDVL-YSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAAPSLNATTVVT 430 HSP 2 Score: 166.007 bits (419), Expect = 1.290e-41 Identity = 114/367 (31.06%), Postives = 176/367 (47.96%), Query Frame = 2
Query: 1532 ENLQLLTEMFCLPYEHGTKGNQLLSDFEWLLENVSDIYEEPPSK--EKVSKWFEKLLQCDEKSQEVYNLFTNFSKIPNEAILYDLYPYIWDVKEVVSALESYVHWLSDSIACNLSIDTIKRSHNGLNIAINKLPIMNEFVEPWHIRYIGGLTGALHRMLPFQGGYIYLGQAPDI-PTSAVLKTRSYSPSDKDSLYRFNRGVVDKS-EVPMETTEDDIAFDYDIGVFSSFNSKTLFLIEDDEKELCGYVAAVSDNKQFVDHITDKWLPEVNTKYSETKTDRKLPHVDK------------PDEWKAPNSSHFILKLDSKVYEECILKRVINTVLSVLKTSGATTVYHKL--DGVTNQDFFLELGFFPV 2578
E+LQLL ++F LPYEHG KG Q+L +F+WL N S + K EK+ +W + + +E V +FT S N ILYD+Y Y+WD+K ++S ++S+V WL C RSH+ I EPW R GGL G R+LP G Q P + PTS V R Y P D+ S+Y+ R + D +P ++ D I D +G S + F++E DE +CGY D F+ W+P + KY++ D++L +K P+ + A S + + KV + + K ++ +LS LK +G+ + ++ D +F+ +LG F +
Sbjct: 556 EDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWL----GC--------RSHSSAQFLIGDQ-------EPWAFR--GGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIG-DKLVGGLLSLSLDYCFVLE-DEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEI 899
The following BLAST results are available for this feature:
|