TCONS_00053305 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053305
Unique NameTCONS_00053305
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053305 ID=TCONS_00053305|Name=TCONS_00053305|organism=Clytia hemisphaerica|type=transcript|length=3499bp
CTGTGGTCAAATATTGCAAAAGATCTTGGCTAAACCactgttatttttac
cccctaTAACAGTGGATCTGTTCAAGATAAATGtatcatttcaaaaatta
aaacattttgttttgttttaaaagttttctgaGGTTCTTTTGAAAACACA
ATTTCTGGGGGTGGTAAATTGATGCATTCATCTTTCTATATTATGtgtca
ccaaaatttctttactAAGTCTTGTAACATCTTGCAGTTGACAGAACAAA
CCAATATTACAAAGAAATTTTGGTGTCAATTGAATGAATTAAAAGAGAAT
TGAAAGTTATACATTCACATTAAAAAAGGTCATTTTAGTTCTCTGAAAac
agtttaaattttctttgacagaaaaactttcaatccTCTTTCTTATTACA
TATTGCCTCTTTGAATACtgtctaaaagaagaaaatgattggCAAAAAAA
CAGTACCCAAGAGGTAAAGGCATCCGCTACTCCTGCTCATAAAAACTGAA
TTACTTGTGTGAGATTTTTCTTCAAGCAATTTGATTGAGGATCAACTCTt
agtatatttttatttttatattttaaacatatttttagTGCTCTTgaagt
atttttttgtttagaaaACTCAAGTCTTTCAATAACTTCTTGCATGAATA
TTAAAACCTGAAAGTCTAATAATAGAATCAAacaaacttgagttttcaat
ACAAAGTAATGCTTCATTTTCGTTCCTCTTCAAAGTTTTTACCATGTTTG
CCCAATTTCTTTTTCTACAGAATATTGCAAGACACGAGCATTGCCAACTG
TAAGAAAATCTGAATATTTGAATACACTTGGTCAGAAGCTCCATCCGGAT
ATTGATGTCATGTGGACAGGTGATAAAGTCATTCCTGAAGTCATAACCAA
GGAATCCATTAAAGAATTGGGTGAAGTTCTCCAAAGAAAGCCAGTCATTT
GGGACAACATACATGCTAATGATTACGACCAAAGACGTGTTTTCCTTGGA
GGCTACCATGGACGACCTGTAGAATTGTACCCTTACTTGAATGGAATTCT
TACCAATCCTAATTGTGAATTTGAAGCAAACTTCATTGCTATTCATACTC
TTGGTACTTGGTGTCGTATTGCGAACAGTGTTCAAGATAGTTCTTCCTTT
GATGTTCAAATGGTAGATCTTTCAGACGAAGTCTGTGTTACACCACCTGA
AACACCAGTTGTCCCTGATGTACCCGAGGTTGATTGTGAAATGTCAGATG
AATTGCTCCCATCCCTAACAGCAGCTGATGTGACCTCAGTTATTGCTTCA
TATAATTATAGCGAGGCTCTCAAGTTAGCTCTTGAGGAATGGTTGATTGA
ATTCAATTTGAATAAGAAAGCTCCTTTAAAATCATATTCCAAACGCAACT
TGAAGACTCAAGTTATCAATGGACAAAGTGTTTTGACAGCTAAATCCTAT
GACTTGGATGTTATTGGAACAGCAAAAGAAaccattgaaacaatgaaaga
aGACAAATCTAAATTGATGGCTCTTAGTCACGAAAACTTACAATTGCTGA
CGGAAATGTTCTGTTTACCTTATGAACATGGTACGAAAGGAAATCAACTT
CTTTCTGATTTCGAATGGCTGCTTGAAAATGTTTCCGATATCTATGAAGA
GCCCCCAAGCAAGGAAAaggtATCCAAATGGTTTGAAAAGCTATTGCAAT
GTGACGAAAAATCTCAAGAAGTCTACAATCTTTTTACAAACTTCAGTAAG
ATTCCAAACGAAGCTATCCTTTACGATTTATACCCCTACATCTGGGACGT
GAAAGAAGTTGTATCTGCCCTCGAGTCGTATGTACACTGGCTCAGTGATT
CGATTGCTTGCAACTTGTCAATCGATACCATAAAGCGTAGTCACAACGGA
CTTAACATTGCCATAAATAAACTTCCTATCATGAATGAATTTGTTGAACC
GTGGCATATTCGTTACATTGGAGGGTTGACCGGTGCACTGCATAGAATGC
TTCCCTTTCAAGGTGGTTATATATACTTGGGACAAGCCCCTGACATCCCG
ACATCAGCCGTCTTGAAAACCAGATCATACTCACCATCGGACAAggaCTC
TTTGTATCGTTTTAATCGTGGCGTTGTCGATAAATCAGAAGTCCCGATGG
AAACAACAGAAGATGACATCGCATTCGATTACGATATCGGAGTATTCTCA
TCTTTTAATTCTAAAACGTTGTTTTTAATCGAAGATGATGAAAAGGAACT
TTGCGGATACGTTGCCGCTGTATCAGATAATAAACAGTTTGTTGATCATA
TTACAGATAAATGGTTACCCGAAGTTAATACTAAATACTCTGAAACGAAA
ACTGATCGAAAACTACCACACGTGGATAAACCAGACGAATGGAAAGCTCC
AAATTCTtcacattttattttgaaactggACTCGAAAGTTTACGAGGAAT
GTATATTGAAACGAGTTATTAATACGGTACTGTCAGTGTTGAAAACGTCT
GGAGCAACGACAGTATATCATAAGCTTGACGGTGTCACCAATCAAGACTT
TTTCCTGGAACTTGGATTTTTCCCTGTACAAGGGGACGAGAAGATGTTTT
GGCGGTCTTTATGATTCCCATGATGTGTGAGGTTTTGGCCTTATAGGTTG
ATATTTTTCGGTTCCAAGTTAAAACAGCTTTCATCATGTTGTTTTAAAtc
caaatttttaaatactaaatTTACTCTAAAATGTGTAACTAAGGCcttca
aaaagatttaaaaaacggcgttgaaatgttttcattcaagTCCAATTTGA
GTCAAAAGAGTAAATTAGAAAATCTAAAAACTACCGATGCTAATTTAATC
ACAGTAtcctttcattttatttttataacgactaattttttagttgaaat
tttttttaaattgagagACACGTCTATTTGtgttatttttatcttttata
tttCCGTTTTTTCATTGCCTAATTTTAAGACAGTCCCATACTCTCCATTG
TAGTATGATTTAGGATGAAATGTCTTTTTCCCCCAAGATAATTGTTCCCG
TCACATCAGTGACATTTTCTGCGGGTAACTTTTAAATTTCTATGAATTAA
TCCTATGCAATTTATTTTGCAACGAGAGGATAGGAGTGTCTTTAAATCTC
TGGGTAAAAGTAATTTAAAAGAATTATTGATTATATAAGGTGTTACATTA
TTTTGtacattgtgaaaaaaaaacaagttttttgtATATACTTCAATTTA
CTCTTGTTAAAGAAACCATTAGACCACTAGATAAAGATATAAGGAATTAT
AAAAAACCGAATTTAATTTCAGAGTTGTAGCTAGAAAGCGAGATTGTTTA
ACTCGACAATCCTTACTCCATTTTAAATTCTGTTTTGGATATTCCGTCGT
CTCTAGTTGACGACttgtaaaaaatcaaattgtatataaatttataaatt
aagtttattactttttttgaaggaaaatatacAATGTTTAAATTGAATG
Run BLAST on NCBI

transcript from alignment at scaffold_228:509252..516253+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053305 ID=TCONS_00053305|Name=TCONS_00053305|organism=Clytia hemisphaerica|type=transcript|length=7002bp|location=Sequence derived from alignment at scaffold_228:509252..516253+ (Clytia hemisphaerica)
CTGTGGTCAAATATTGCAAAAGATCTTGGCTAAACCactgttatttttac cccctaTAACAGTGGATCTGTTCAAGATAAATGtatcatttcaaaaatta aaacattttgttttgttttaaaagttttctgaGGTTCTTTTGAAAACACA ATTTCTGGGGGTGGTAAATTGATGCATTCATCTTTCTATATTATGtgtca ccaaaatttctttactAAGTCTTGTAACATCTTGCAGTTGACAGAACAAA CCAATATTACAAAGAAATTTTGGTGTCAATTGAATGAATTAAAAGAGAAT TGAAAGTTATACATTCACATTAAAAAAGGTCATTTTAGTTCTCTGAAAac agtttaaattttctttgacagaaaaactttcaatccTCTTTCTTATTACA TATTGCCTCTTTGAATACtgtctaaaagaagaaaatgattggCAAAAAAA CAGTACCCAAGAGGTAAAGGCATCCGCTACTCCTGCTCATAAAAACTGAA TTACTTGTGTGAGATTTTTCTTCAAGCAATTTGATTGAGGATCAACTCTt agtatatttttatttttatattttaaacatatttttagTGCTCTTgaagt atttttttgtttagaaaACTCAAGTCTTTCAATAACTTCTTGCATGAATA TTAAAACCTGAAAGTCTAATAATAGAATCAAacaaacttgagttttcaat ACAAAGTAATGCTTCATTTTCGTTCCTCTTCAAAGTTTTTACCATGTTTG CCCAATTTCTTTTTCTACAGAATATTGCAAGACACGAGCATTGCCAACTG TAAGAAAATCTGAATATTTGAATACACTTGGTCAGAAGCTCCATCCGGAT ATTGATGTCATGTGGACAGGTAAATTTAGGAATTTCCTTTAGACTTGATT GCTCGGATTTCTAGTTAAACTCTTGATTTAGCTTGATTCATTGTCTCACT TCATTCTGTCAATAGAAAATCACTTTAAAGTTCTTCTAGTTTTCAACAAA TGCTTCTAATATTTTCCTTCAGGTGATAAAGTCATTCCTGAAGTCATAAC CAAGGAATCCATTAAAGAATTGGGTGAAGTTCTCCAAAGAAAGCCAGTCA TTTGGGACAACATACATGCTAATGATTACGACCAAAGACGTGTTTTCCTT GGAGGCTACCATGGACGACCTGTAGAATTGTACCCTTACTTGAATGGAAT TCTTACCAATCCTAATTGTGAATTTGAAGCAAACTTCATTGCTATTCATA CTCTTGGTACTTGGTGTCGTATTGCGAACAGTGTTCAAGATAGTTCTTCC TTTGATGTTCAAATGGTAGATCTTTCAGACGAAGTCTGTGTTACACCACC TGAAACACCAGTTGTCCCTGATGTACCCGAGGTTGATTGTGAAATGTCAG ATGAATTGCTCCCATCCCTAACAGCAGCTGATGTGACCTCAGTTATTGCT TCATATAATTATAGCGAGGCTCTCAAGTTAGCTCTTGAGGAATGGTTGAT TGAATTCAATTTGAATAAGAAAGCTCCTTTAAAATCATATTCCAAACGCA ACTTGAAGACTCAAGTTATCAATGGACAAAGTGTTTTGACAGCTAAATCC TATGACTTGGATGTTATTGGAACAGCAAAAGGTAAGTCGAAGCTATCTAA TTCAAAATTATTATATGTAGATGATCTCTTTGTTTCTGCTCTCAAAAAAA CTGCAAGATATTTTATAGATTTAGATAATAAGGGCTCTCAGTGGATCTTC AATTTGAGCAATTGCGCAATTTTTTCCCAATATTCAGGCATTCATGCAAT CTTTTTTTCGCAATAGACCTTAtaggagttttttatttttctaaaaaagc gatggattgtgggattgtgggattgtttctaGTGTATAACAATTGAATTC CCTCAAGGAATTCCttgagatttctattgtaatacactcgaaacaatccc acaatgcatcgcttttttagaaaaaaactctAAGGTCTATTCACACAATT TCTGTTCACGGAAAGTTTTCCAAGTCACACATCCACGCATCTCTTTTAAA GTTTTAACACATTCACACAAGTTAAAGGATATTGTCAGTTTTTgcatatt tcaatgttttttctcATTCTCTAGAAaccattgaaacaatgaaagaaGAC AAATCTAAATTGATGGCTCTTAGTCACGAAAACTTACAATTGCTGACGGA AATGTTCTGTTTACCTTATGAACATGGTACGAAAGGAAATCAACTTCTTT CTGATTTCGAATGGCTGCTTGAAAATGTTTCCGATATCTATGAAGAGCCC CCAAGCAAGGAAAaggtaattgtttttttttgcatctttatccattttgt cAGAATTTTTCTTTGCAACCATTGTTCAAGACCAAACAAAGTGGATTAGG CTTTGAAAATCTACCAGCACTacgattttttctatttttcaggtATCCAA ATGGTTTGAAAAGCTATTGCAATGTGACGAAAAATCTCAAGAAGTCTACA ATCTTTTTACAAACTTCAGTAAGATTCCAAACGAAGCTATCCTTTACGAT TTATACCCCTACATCTGGGACGTGAAAGAAGTTGTATCTGCCCTCGAGTC GTATGTACACTGGCTCAGTGATTCGATTGCTTGCAACTTGTCAATCGATA CCATAAAGCGTAGTCACAACGGACTTAACATTGCCATAAATAAACTTCCT ATCATGAATGAATTTGTTGAACCGTGGCATATTCGTTACATTGGAGGGTT GACCGGTGCACTGCATAGAATGCTTCCCTTTCAAGGTGGTTATATATACT TGGGACAAGCCCCTGACATCCCGACATCAGCCGTCTTGAAAACCAGATCA TACTCACCATCNGCAAGCTCCTGACATCCCGACATCAGCCGTCTTGAAAA CCAGATCATACTCACCATCGGACAAggtaaatatatgaatgttttCCGTG GCTGTCCTCTCTACTTTATTGGATTTCAGGTTCACAGACTGCTAAACTAC ATTAATCCAGACCCAGATATACagatatttttcgattttcttattatttt ggaGGGATACATTTCACAAACTTTCTGCCAGGGAAATTTGACtgaaacat tttgaaatgaaaatgcaaGAAACAAAACTTAGTCTATTTTACCCCTTACT ATacgaaaacaattaaaagctttttggacctaccccggtggggtggaggt cctataaattaacccgtgttcgttagttagttagttcgttcgttcgttag ttaccaacttttctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNTGGCTGTCCTCTCTACTTTATTGGATTT CAGGTTGACAGACTGCTAAACTACATTAATCCAGACCCAGATATACagat atttttcgattttcttattattttggaGGGATACATTTCACAAACTTTCT GCCAGGGAAATTTGACtgaaacattttgaaatgaaaatgcaaGAAACAAA ACTTGGTCTATTTTACCCCTTACTATacgaaaacaattaaaagctTTTTA ATTTCTAGTGttgaattttgatgaattgcatcctttttataattttagga CTCTTTGTATCGTTTTAATCGTGGCGTTGTCGATAAATCAGAAGTCCCGA TGGAAACAACAGAAGATGACATCGCATTCGATTACGATATCGGAGTATTC TCATCTTTTAATTCTAAAACGTTGTTTTTAATCGAAGATGATGAAAAGGA ACTTTGCGGATACGTTGCCGCTGTATCAGATAATAAACAGTTTGTTGATC ATATTACAGATAAATGGTTACCCGAAGTTAATACTAAATACTCTGAAACG AAAACTGATCGAAAACTACCACACGTGGATAAACCAGACGAATGGAAAGC TCCAAATTCTtcacattttattttgaaactggACTCGAAAGTTTACGAGG AATGTATATTGAAACGAGTTATTAATACGGTACTGTCAGTGTTGAAAACG TCTGGAGCAACGACAGTATATCATAAGCTTGACGGTGTCACCAATCAAGA CTTTTTCCTGGAACTTGGATTTTTCCCTGTACAAGGGGACGAGAAGATGT TTTGGCGGTCTTTATGATTCCCATGATGTGTGAGGTTTTGGCCTTATAGG TTGATATTTTTCGGTTCCAAGTTAAAACAGCTTTCATCATGTTGTTTTAA AtccaaatttttaaatactaaatTTACTCTAAAATGTGTAACTAAGGCct tcaaaaagatttaaaaaacggcgttgaaatgttttcattcaagTCCAATT TGAGTCAAAAGAGTAAATTAGAAAATCTAAAAACTACCGATGCTAATTTA ATCACAGTAtcctttcattttatttttataacgactaattttttagttga aattttttttaaattgagagACACGTCTATTTGtgttatttttatctttt atatttCCGTTTTTTCATTGCCTAATTTTAAGACAGTCCCATACTCTCCA TTGTAGTATGATTTAGGATGAAATGTCTTTTTCCCCCAAGATAATTGTTC CCGTCACATCAGTGACATTTTCTGCGGGTAACTTTTAAATTTCTATGAAT TAATCCTATGCAATTTATTTTGCAACGAGAGGATAGGAGTGTCTTTAAAT CTCTGGGTAAAAGTAATTTAAAAGAATTATTGATTATATAAGGTGTTACA TTATTTTGtacattgtgaaaaaaaaacaagttttttgtATATACTTCAAT TTACTCTTGTTAAAGAAACCATTAGACCACTAGATAAAGATATAAGGAAT TATAAAAAACCGAATTTAATTTCAGAGTTGTAGCTAGAAAGCGAGATTGT TTAACTCGACAATCCTTACTCCATTTTAAATTCTGTTTTGGATATTCCGT CGTCTCTAGTTGACGACttgtaaaaaatcaaattgtatataaatttataa attaagtttattactttttttgaaggaaaatatacAATGTTTAAATTGAA TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033643XLOC_033643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053305-exon-scaffold_228-1491911889:509252..510120TCONS_00053305-exon-scaffold_228-1491911889:509252..510120Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:509252..510120TCONS_00053305-exon-scaffold_228-1510915933:509252..510120Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:509252..510120TCONS_00053305-exon-scaffold_228-1575043694:509252..510120Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1491911889:510274..510882TCONS_00053305-exon-scaffold_228-1491911889:510274..510882Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:510274..510882TCONS_00053305-exon-scaffold_228-1510915933:510274..510882Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:510274..510882TCONS_00053305-exon-scaffold_228-1575043694:510274..510882Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1491911889:511376..511566TCONS_00053305-exon-scaffold_228-1491911889:511376..511566Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:511376..511566TCONS_00053305-exon-scaffold_228-1510915933:511376..511566Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:511376..511566TCONS_00053305-exon-scaffold_228-1575043694:511376..511566Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1491911889:511694..512068TCONS_00053305-exon-scaffold_228-1491911889:511694..512068Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:511694..512068TCONS_00053305-exon-scaffold_228-1510915933:511694..512068Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:511694..512068TCONS_00053305-exon-scaffold_228-1575043694:511694..512068Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1491911889:512127..512177TCONS_00053305-exon-scaffold_228-1491911889:512127..512177Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:512127..512177TCONS_00053305-exon-scaffold_228-1510915933:512127..512177Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:512127..512177TCONS_00053305-exon-scaffold_228-1575043694:512127..512177Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1491911889:514850..516253TCONS_00053305-exon-scaffold_228-1491911889:514850..516253Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1510915933:514850..516253TCONS_00053305-exon-scaffold_228-1510915933:514850..516253Clytia hemisphaericaexon
TCONS_00053305-exon-scaffold_228-1575043694:514850..516253TCONS_00053305-exon-scaffold_228-1575043694:514850..516253Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:509252..516253 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.608354 0.660735 0.133946 0 4.60504 3.24427 9.41567 11.9096 13.7959 12.2442 26.0971 14.016 16.8122 26.1545 14.9629 11.546 10.6991 17.628 32.0033 33.5722 26.7086 26.5765 11.4302 13.8103 6.24831 8.05997 25.8585 44.4368 11.2626 8.38911
Blast
BLAST of TCONS_00053305 vs. Swiss-Prot (Human)
Match: OGA (Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 1.403e-46
Identity = 102/244 (41.80%), Postives = 138/244 (56.56%), Query Frame = 2
Query:  740 YHVCPISFSTEYCKTRALPTVRKSEYLNTLGQKLHPDIDVMWTGDKVIPEVITKESIKELGEVLQRKPVIWDNIHANDYDQRRVFLGGYHGRPVELYPYLNGILTNPNCEFEANFIAIHTLGTWCRIANSVQDSSSFDVQMVDLSDXXXXXXXXXXXXXXXXXXXXXMSDELLPSLTAADVTSVIASYNYSEALKLALEEWLIEFNLNKKAPLKSYSKRNLKTQVINGQSVLTAKSYDLDVIGT 1471
            +  CP    TEYC T   P V +S YL T+G+KL P I+V+WTG KV+ + I  ESI+E+ ++++R PVIWDNIHANDYDQ+R+FLG Y GR  EL P L G+LTNPNCEFEAN++AIHTL TW +   S  +    DV M D  D       +              SDE        D+ + +  Y+   ALKLAL EWL EF +  +   +  +    K  V++G  ++ A S +   + T
Sbjct:  212 FLFCP----TEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYK---SNMNGVRKDVVMTDSEDSTVSIQIKLENEG---------SDE--------DIETDVL-YSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAAPSLNATTVVT 430          

HSP 2 Score: 166.007 bits (419), Expect = 1.290e-41
Identity = 114/367 (31.06%), Postives = 176/367 (47.96%), Query Frame = 2
Query: 1532 ENLQLLTEMFCLPYEHGTKGNQLLSDFEWLLENVSDIYEEPPSK--EKVSKWFEKLLQCDEKSQEVYNLFTNFSKIPNEAILYDLYPYIWDVKEVVSALESYVHWLSDSIACNLSIDTIKRSHNGLNIAINKLPIMNEFVEPWHIRYIGGLTGALHRMLPFQGGYIYLGQAPDI-PTSAVLKTRSYSPSDKDSLYRFNRGVVDKS-EVPMETTEDDIAFDYDIGVFSSFNSKTLFLIEDDEKELCGYVAAVSDNKQFVDHITDKWLPEVNTKYSETKTDRKLPHVDK------------PDEWKAPNSSHFILKLDSKVYEECILKRVINTVLSVLKTSGATTVYHKL--DGVTNQDFFLELGFFPV 2578
            E+LQLL ++F LPYEHG KG Q+L +F+WL  N S +      K  EK+ +W  +  + +E    V  +FT  S   N  ILYD+Y Y+WD+K ++S ++S+V WL     C        RSH+     I          EPW  R  GGL G   R+LP  G      Q P + PTS V   R Y P D+ S+Y+  R + D    +P ++  D I  D  +G   S +    F++E DE  +CGY     D   F+      W+P +  KY++   D++L   +K            P+ + A   S   + +  KV +  + K ++  +LS LK +G+   + ++  D     +F+ +LG F +
Sbjct:  556 EDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWL----GC--------RSHSSAQFLIGDQ-------EPWAFR--GGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGLPFQSQPDLIG-DKLVGGLLSLSLDYCFVLE-DEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKANGSRGAFCEVRPDDKRILEFYSKLGCFEI 899          
The following BLAST results are available for this feature:
BLAST of TCONS_00053305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OGA1.403e-4641.80Protein O-GlcNAcase OS=Homo sapiens GN=MGEA5 PE=1 ... [more]
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