TCONS_00053380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053380
Unique NameTCONS_00053380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053380 ID=TCONS_00053380|Name=TCONS_00053380|organism=Clytia hemisphaerica|type=transcript|length=387bp
CAACATTGGATTGGCGTAAAGAGAGTTCTGCGTTATTTGAAAGGAACACT
TGATTATGGCTTGATCTACGAAGGATCTGAGTCAGGAGATATTCTGCTTC
ACAGTTTTGCAGATGCTGATTGGGCTGGAGATATTGACACACGAAAATCC
ACCTCTGGTTACGTATTCAAAATCGGAAATTCTACAGTATCGTGGAAATC
CAAGCGTCAATCGATCGTTGCACTCTCGACAACAGAAGCTGAATATGTAG
CCTTGTCTCAAGCAACGCAGGAGGTTATTTGACTACGAACTTTATTCAAA
GGTATGGATTTCGAGCAAACTGATCcaacaaaaatgtttgaagacAATCA
AGGAGCTATTGAGTTGGCAAAGAACCCAACTCACCAN
Run BLAST on NCBI

transcript from alignment at scaffold_228:636774..637160

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053380 ID=TCONS_00053380|Name=TCONS_00053380|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at scaffold_228:636774..637160 (Clytia hemisphaerica)
NTGGTGAGTTGGGTTCTTTGCCAACTCAATAGCTCCTTGATTgtcttcaa
acatttttgttgGATCAGTTTGCTCGAAATCCATACCTTTGAATAAAGTT
CGTAGTCAAATAACCTCCTGCGTTGCTTGAGACAAGGCTACATATTCAGC
TTCTGTTGTCGAGAGTGCAACGATCGATTGACGCTTGGATTTCCACGATA
CTGTAGAATTTCCGATTTTGAATACGTAACCAGAGGTGGATTTTCGTGTG
TCAATATCTCCAGCCCAATCAGCATCTGCAAAACTGTGAAGCAGAATATC
TCCTGACTCAGATCCTTCGTAGATCAAGCCATAATCAAGTGTTCCTTTCA
AATAACGCAGAACTCTCTTTACGCCAATCCAATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033694XLOC_033694Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053380-exon-scaffold_228-1491911889:636774..637160TCONS_00053380-exon-scaffold_228-1491911889:636774..637160Clytia hemisphaericaexon
TCONS_00053380-exon-scaffold_228-1510915933:636774..637160TCONS_00053380-exon-scaffold_228-1510915933:636774..637160Clytia hemisphaericaexon
TCONS_00053380-exon-scaffold_228-1575043694:636774..637160TCONS_00053380-exon-scaffold_228-1575043694:636774..637160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:636774..637160 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.306233	0.62839	1.77897	0.429172	26.6678	18.4136	5.11563	3.47951	1.10362	2.26043	0.45454	0.824222	0.951238	1.10129	0.577641	0.68136	0.299247	1.16581	0	0.443422	0	1.73884	0	0.0400785	0.594642	0	1.20534	0	0.16926	0.450781
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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