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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053381 ID=TCONS_00053381|Name=TCONS_00053381|organism=Clytia hemisphaerica|type=transcript|length=1765bp
NGGAAACGCAATGGACGAAATCGATTTATGGCACCAACGATATGGTCATC
TCGGCTACGAcaacttaaaattactgaacaAGAAGGAAATGGTCAACGGC
CTTGATTTCGACTTGAAGGAGACAGTCAATCGAAACTGTAAAGGTTGCGC
GATGGAGAAGCAACATCGACAACCGTTCCCGAAGAAATCGACGAACACCA
CAAAGGGATTACTTGAATTGATTCACAGTGATGTTTGTGGTCCAATGGNA
GATTTCGATATCGAAAAGTTTGACGGTACTAATTCAAACTTTGAATTCTT
TCCTGAATCGACCGAACCAGACGAACCTGAAGACAACCTAGAAAATCGCC
CAAATGCTAGACCTGTACGCACAAGGAAACCGCCTGAGAGACTAAACGTC
CTGACTGGTGAATGGTGGAATCTGATGGATGCGGCATCAATCGCCATAGT
TGACAAAGAGGAACCAACCACCATTGAGGAGGCATTGTCCAGCCCGAATG
CTGAACTTTGAAAGGACGCTATCCAAAATGAGTACGATTCATTGATCGAA
AACGAAACTTGAAAATTGGTTGAAATGCCACCTGACAAAAACCTAGTAAG
AAATAAATGGGTTTTCAAACATAAGAGAGGAGCTGATGGCAAAATTCAAA
GATGCAAAGCTCATCTTGTAGCACAAGGATATTCGCAAAAATCCAGAATA
GATTACAACGACGTATTCGCACCTGTCGCAAAATACAATTCAATTCGCTC
CGTACTTGCAATTACAAACGAACTCGACTTAAAACTGCATCAAATAAACG
TCAAGACAGCGTTCTTAAATGGAGATCTTGAGGAAGACATCTTCATGAAA
CAACCTGAAGGATTCATTAACAGGGACAATCCGAATATAGCATGCAAGTT
GCAAAAAAGCATTTACGATCTAAAACAATCTGCCCGATGCTGGAACGAAA
AGATGGACGAATTCCTTAAAGAATCAGGATTCACTAGAAACGACGCTGAC
CCTTGTATCTNAGTATTTCGTTACGTTTATCGACGATTACTCCAGATATA
CAACCGTTTATATGATGAAGCATAAATCAGAAGTGTTGGCTAAATTTACC
GAATTTGTAAATCTTGTCAAGAATCGAACGGAACTGAAAGTTAAACGGCT
GAACGTAGAGAACCAAACTATAAAACGTTTACGTTCTAATAATGGTGGTA
AATATACGTCGACCGAATTCACAAGTTTTTGCACCGACCGTGGAATCTCG
CGTGAACCGACTATACCGTATTCTCCTCAACAGAACGGAGTTGCCGAACG
TATGAATCGAACTCTTTTAGAAACTGCACGTTCGATGTTGCATCACGCTC
AGAAACCGATTAAATTTTGGGCTGAGGCTATTTCGACTGCTTGCTACGTC
CAGAATCGTAGTCCAACAGCATTTTTAAAGGAGACCACACCTTATGAAAT
ATGGCACCGAAAGAAACCGGATGTGAGTAATATGAAAGTTTTCGGATGTA
AGTCCTACGTACACGTTCCAGATACCAAACGCAAAGGAAAGTTCGACAAG
AAATCGATTTCATGTATATTTGTCGGTTACCCATCAAACGAAAATGGATT
CAAGTTTTACGACCCACAAACCAGAAAAATGTTCCGAAGCCGAGACGTAA
CCTTTGTGGAAAAGGATTTCGATATCGAAAAGTTTGACGGTACTAATTCA
AACTTTGAATTCTTTCCTGAATCGACCGAACCAGACGAACCTGAAGACAA
CCCGGAAAATCGCCC Run BLAST on NCBI protein sequence of TCONS_00053381-protein >TCONS_00053381-protein ID=TCONS_00053381-protein|Name=TCONS_00053381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MMKHKSEVLAKFTEFVNLVKNRTELKVKRLNVENQTIKRLRSNNGGKYTS
TEFTSFCTDRGISREPTIPYSPQQNGVAERMNRTLLETARSMLHHAQKPI
KFWAEAISTACYVQNRSPTAFLKETTPYEIWHRKKPDVSNMKVFGCKSYV
HVPDTKRKGKFDKKSISCIFVGYPSNENGFKFYDPQTRKMFRSRDVTFVE
KDFDIEKFDGTNSNFEFFPESTEPDEPEDNPENR Run BLAST on NCBI transcript from alignment at scaffold_228:637559..639323 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053381 ID=TCONS_00053381|Name=TCONS_00053381|organism=Clytia hemisphaerica|type=transcript|length=1765bp|location=Sequence derived from alignment at scaffold_228:637559..639323 (Clytia hemisphaerica)
GGGCGATTTTCCGGGTTGTCTTCAGGTTCGTCTGGTTCGGTCGATTCAGG
AAAGAATTCAAAGTTTGAATTAGTACCGTCAAACTTTTCGATATCGAAAT
CCTTTTCCACAAAGGTTACGTCTCGGCTTCGGAACATTTTTCTGGTTTGT
GGGTCGTAAAACTTGAATCCATTTTCGTTTGATGGGTAACCGACAAATAT
ACATGAAATCGATTTCTTGTCGAACTTTCCTTTGCGTTTGGTATCTGGAA
CGTGTACGTAGGACTTACATCCGAAAACTTTCATATTACTCACATCCGGT
TTCTTTCGGTGCCATATTTCATAAGGTGTGGTCTCCTTTAAAAATGCTGT
TGGACTACGATTCTGGACGTAGCAAGCAGTCGAAATAGCCTCAGCCCAAA
ATTTAATCGGTTTCTGAGCGTGATGCAACATCGAACGTGCAGTTTCTAAA
AGAGTTCGATTCATACGTTCGGCAACTCCGTTCTGTTGAGGAGAATACGG
TATAGTCGGTTCACGCGAGATTCCACGGTCGGTGCAAAAACTTGTGAATT
CGGTCGACGTATATTTACCACCATTATTAGAACGTAAACGTTTTATAGTT
TGGTTCTCTACGTTCAGCCGTTTAACTTTCAGTTCCGTTCGATTCTTGAC
AAGATTTACAAATTCGGTAAATTTAGCCAACACTTCTGATTTATGCTTCA
TCATATAAACGGTTGTATATCTGGAGTAATCGTCGATAAACGTAACGAAA
TACTNAGATACAAGGGTCAGCGTCGTTTCTAGTGAATCCTGATTCTTTAA
GGAATTCGTCCATCTTTTCGTTCCAGCATCGGGCAGATTGTTTTAGATCG
TAAATGCTTTTTTGCAACTTGCATGCTATATTCGGATTGTCCCTGTTAAT
GAATCCTTCAGGTTGTTTCATGAAGATGTCTTCCTCAAGATCTCCATTTA
AGAACGCTGTCTTGACGTTTATTTGATGCAGTTTTAAGTCGAGTTCGTTT
GTAATTGCAAGTACGGAGCGAATTGAATTGTATTTTGCGACAGGTGCGAA
TACGTCGTTGTAATCTATTCTGGATTTTTGCGAATATCCTTGTGCTACAA
GATGAGCTTTGCATCTTTGAATTTTGCCATCAGCTCCTCTCTTATGTTTG
AAAACCCATTTATTTCTTACTAGGTTTTTGTCAGGTGGCATTTCAACCAA
TTTTCAAGTTTCGTTTTCGATCAATGAATCGTACTCATTTTGGATAGCGT
CCTTTCAAAGTTCAGCATTCGGGCTGGACAATGCCTCCTCAATGGTGGTT
GGTTCCTCTTTGTCAACTATGGCGATTGATGCCGCATCCATCAGATTCCA
CCATTCACCAGTCAGGACGTTTAGTCTCTCAGGCGGTTTCCTTGTGCGTA
CAGGTCTAGCATTTGGGCGATTTTCTAGGTTGTCTTCAGGTTCGTCTGGT
TCGGTCGATTCAGGAAAGAATTCAAAGTTTGAATTAGTACCGTCAAACTT
TTCGATATCGAAATCTNCCATTGGACCACAAACATCACTGTGAATCAATT
CAAGTAATCCCTTTGTGGTGTTCGTCGATTTCTTCGGGAACGGTTGTCGA
TGTTGCTTCTCCATCGCGCAACCTTTACAGTTTCGATTGACTGTCTCCTT
CAAGTCGAAATCAAGGCCGTTGACCATTTCCTTCTtgttcagtaatttta
agttgTCGTAGCCGAGATGACCATATCGTTGGTGCCATAAATCGATTTCG
TCCATTGCGTTTCCN Coding sequence (CDS) from alignment at scaffold_228:637559..639323 >TCONS_00053381 ID=TCONS_00053381|Name=TCONS_00053381|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_228:637559..639323 (Clytia hemisphaerica)
GCGATTTTCCGGGTTGTCTTCAGGTTCGTCTGGTTCGGTCGATTCAGGAA
AGAATTCAAAGTTTGAATTAGTACCGTCAAACTTTTCGATATCGAAATCC
TTTTCCACAAAGGTTACGTCTCGGCTTCGGAACATTTTTCTGGTTTGTGG
GTCGTAAAACTTGAATCCATTTTCGTTTGATGGGTAACCGACAAATATAC
ATGAAATCGATTTCTTGTCGAACTTTCCTTTGCGTTTGGTATCTGGAACG
TGTACGTAGGACTTACATCCGAAAACTTTCATATTACTCACATCCGGTTT
CTTTCGGTGCCATATTTCATAAGGTGTGGTCTCCTTTAAAAATGCTGTTG
GACTACGATTCTGGACGTAGCAAGCAGTCGAAATAGCCTCAGCCCAAAAT
TTAATCGGTTTCTGAGCGTGATGCAACATCGAACGTGCAGTTTCTAAAAG
AGTTCGATTCATACGTTCGGCAACTCCGTTCTGTTGAGGAGAATACGGTA
TAGTCGGTTCACGCGAGATTCCACGGTCGGTGCAAAAACTTGTGAATTCG
GTCGACGTATATTTACCACCATTATTAGAACGTAAACGTTTTATAGTTTG
GTTCTCTACGTTCAGCCGTTTAACTTTCAGTTCCGTTCGATTCTTGACAA
GATTTACAAATTCGGTAAATTTAGCCAACACTTCTGATTTATGCTTCATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053381-exon-scaffold_228-1491911889:637559..639323 | TCONS_00053381-exon-scaffold_228-1491911889:637559..639323 | Clytia hemisphaerica | exon |
| TCONS_00053381-exon-scaffold_228-1510915933:637559..639323 | TCONS_00053381-exon-scaffold_228-1510915933:637559..639323 | Clytia hemisphaerica | exon |
| TCONS_00053381-exon-scaffold_228-1575043694:637559..639323 | TCONS_00053381-exon-scaffold_228-1575043694:637559..639323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:637559..639323 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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