TCONS_00053344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053344
Unique NameTCONS_00053344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053344 ID=TCONS_00053344|Name=TCONS_00053344|organism=Clytia hemisphaerica|type=transcript|length=1301bp
CCTTACCAAGATTGTCCTCCTCGTGGCGCAAACTACAAtGATACGTTTTT
TAAACAAATCGCACAATGAAGAAACAATCATCTCATCAGCAACCATCAGT
CAACAAAGTGACATCCATCTCTAAACCAAGATCATTGGATGTCCTCATGA
AAGGCACTGCTGTATTGGATGTcaaatcaaaatgtttttcatcAACAACC
ACGGCCACAACTTTAGCGAAACCAATGAAAACTttagaagaagatgaaga
aaataaaattgaaaagATTGAGGAAGATTCATCGCTAGAAGATCAACGTA
AACCTGCTATTGCTTCAGTTGCAAATAccacaaaaatattgaaattggaA
CGGAGAAGCAAGCCCAAGAAAAAGAAACAGTATAATGTcctcaaaaagaa
agaaaagaaatcagACGACATGCTTAAAAGGGAAAGTACGTTCAGTAGTG
AGAGTATGTTTGATAATCAAGAATCAACTTCCTCAGGACTTTCGCAAAGA
CTATCCACCCTCTCCACAACATCTGTAAAAAATCGATTACAATCTTTTGA
AAAGAATGATGAGGAATTTTACAAGATTATCAATCAGATCACCAAAGAAA
ATAGTGGTGTAGATCAAGTGGATGATCAAACTACTGAGGAGGAACTGGTC
ACATACAGAGAATCAGGACTTGATTGTCTACCAATGAATACATCTGAAAA
TACCAGCATTTCATCATCTACATCTAATACTCcacaaaaaaaatctaaaa
taaacaaaactttATCCAATCAATCAGAAAAAATTGATATTCTCAATACA
GAAGAATCACGTATCTCAACACAAGCTTCAcagttttcttcaaaaatctc
ttCCCTTTCTTCACGTTTATCCAAAGTTTCTACTCAGTCTTTGAGACCAT
CTAGAATCTCCCCAGGGATATCACAACAATCCTCCCGGAGGAGCTCGCAG
AGGTCTAAATTATCACCAGGAACTCCACAATACAGCTCAAAGTTCAAGGT
TCAAAGCTcaagatttttatcaaaagtctCAATTAACCCATCTACAATGG
AAAGTCATAGAGATTCTTTGCTATCCACCAGAGAAGAAACTTCAAGACCA
GGGCTTCAAGAACACCTCATTGTAGAATCGCCTGAGAAATCTTTCCATCA
ACAATCATCCATCAGATTGCCTAAATCGCCAGGATCAAGCGAGAACCTGA
TTGATGACTCTCATCTtaataaagaaaaaGTTTCAGAAGAAATCTTCTCA
GTAATTGAAGAGAGTGAAGCTGAGGACGAGGAAGAAAAAAGGGATAAANA
T
Run BLAST on NCBI

transcript from alignment at scaffold_228:674198..676487-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053344 ID=TCONS_00053344|Name=TCONS_00053344|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at scaffold_228:674198..676487- (Clytia hemisphaerica)
CCTTACCAAGATTGTCCTCCTCGTGGCGCAAACTACAAGTAAAAGTTAAC
CAATGATTTTGCCAAACACGTTGCCAAACAACCTGTCCAAACTATTGCAT
TTTATCAAGTCTTTCAATTTAAATCTGCCTTAAGGTTTGTATTTTGGAAA
CGCTACCCTGAGATTTAGGCTGATTGAGTCAAGTAGACGTTTTTGTTTCA
ATTTTAGTGATACGTTTTTTAAACAAATCGCACAATGAAGAAACAATCAT
CTCATCAGCAACCATCAGTCAACAAAGTGACATCCATCTCTAAACCAAGA
TCATTGGATGTCCTCATGAAAGGCACTGCTGTATTGGATGTCAAATCAAA
ATGTTTTTCATCAACAACCACGGCCACAACTTTAGCGAAACCAATGAAAA
CTTTAGAAGAAGATGAAGAAAATAAAATTGAAAAGGTTTATTTTGAATAA
AGTATCATTAATTTTCAAAATCGTTTTTCCCTGTTTTAATTCCAAATTAA
TTTCATTTAAAGCTGTTGTAACCTTGTAGTACAATTGGCTGCTTTCTTGA
TAAGCTCCTGTTTTTGATTCAATTGAAAGTTCTCATCCCAGTTCAAAATT
TTTTGGCTTCTTTTCTCTAGATTGAGGAAGATTCATCGCTAGAAGATCAA
CGTAAACCTGCTATTGCTTCAGTTGCAAATACCACAAAAATATTGAAATT
GGAACGGAGAAGCAAGCCCAAGAAAAAGAAACAGTATAATGTCCTCAAAA
AGAAAGAAAAGAAATCAGACGACATGCTTAAAAGGTGACCCCTTTTTATA
CATTTCAAACCCTGTGAAATAGCATAGTTTGAAAATTTTAACTTTTTTTT
TACCTTCATTTTGTTTTGGTGGCCTAATGAGATACTTAGATGTGTCAGTT
TTAAAACATAGTTTATAGATCCGGTAAAAATTATTTATAGCTTTCCCCAC
TTGAACTGGACAAGGTGGAGTTTTTACAAGCTCTTAATTGATTTGGTTGG
TCGTTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACACTTT
TTTTTCTAACGCCACATTCTTATTACTTCAAATGACCAATTATCAAAGTA
TCTCATAAAAACTTCATCTCATCTGCCTTAAACATAATTTGAAACTCATT
TACGATTACATTTTAGGGAAAGTACGTTCAGTAGTGAGAGTATGTTTGAT
AATCAAGAATCAACTTCCTCAGGACTTTCGCAAAGACTATCCACCCTCTC
CACAACATCTGTAAAAAATCGATTACAATCTTTTGAAAAGAATGATGAGG
AATTTTACAAGATTATCAATCAGATCACCAAAGAAAATAGTGGTGTAGAT
CAAGTGGATGATCAAACTACTGAGGAGGAACTGGTCACATACAGAGAATC
AGGACTTGATTGTCTACCAATGAATACATCTGAAAATACCAGCATTTCAT
CATCTACATCTAATACTCCACAAAAAAAATCTAAAATAAACAAAACTTTA
TCCAATCAATCAGAAAAAATTGATATTCTCAATACAGAAGAATCACGTAT
CTCAACACAAGCTTCACAGTTTTCTTCAAAAATCTCTTCCCTTTCTTCAC
GTTTATCCAAAGTTTCTACTCAGTCTTTGAGACCATCTAGAATCTCCCCA
GGGATATCACAACAATCCTCCCGGAGGAGCTCGCAGAGGTCTAAATTATC
ACCAGGAACTCCACAATACAGCTCAAAGTTCAAGGTTCAAAGCTCAAGAT
TTTTATCAAAAGTCTCAATTAACCCATCTACAATGGAAAGTCATAGAGAT
TCTTTGCTATCCACCAGAGAAGAAACTTCAAGACCAGGGCTTCAAGAACA
CCTCATTGTAGAATCGCCTGAGAAATCTTTCCATCAACAATCATCCATCA
GATTGCCTAAATCGCCAGGATCAAGCGAGAACCTGATTGATGACTCTCAT
CTTAATAAAGAAAAAGTAATTATGATATTTTGATTGTGAAAACTTTGCTT
TATATCCTTTGAATTCGACTACTGTGGTTTAAAAGTCTGGAAAAAGTTAA
TTAAGACTAGGGTATTGAAGAAAAAAACACATAGAAATTTCGTCATATAA
TTTCAGTGAGATATAGACAGTAATTTTTGAAATGTAATCTAAAATTTTGC
TTTTAGAATTTTTCTATAATATAGAATTTTGTAACAACTTTTGTTACTAT
TTTTTTCTTCATCGTCAGGTTTCAGAAGAAATCTTCTCAGTAATTGAAGA
GAGTGAAGCTGAGGACGAGGAAGAAAAAAGGGATAAANAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033661XLOC_033661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053344-exon-scaffold_228-1575043694:676450..676487TCONS_00053344-exon-scaffold_228-1575043694:676450..676487Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1575043694:676053..676280TCONS_00053344-exon-scaffold_228-1575043694:676053..676280Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1575043694:675704..675867TCONS_00053344-exon-scaffold_228-1575043694:675704..675867Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1575043694:674523..675321TCONS_00053344-exon-scaffold_228-1575043694:674523..675321Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1575043694:674198..674269TCONS_00053344-exon-scaffold_228-1575043694:674198..674269Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1510915933:676450..676487TCONS_00053344-exon-scaffold_228-1510915933:676450..676487Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1510915933:676053..676280TCONS_00053344-exon-scaffold_228-1510915933:676053..676280Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1510915933:675704..675867TCONS_00053344-exon-scaffold_228-1510915933:675704..675867Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1510915933:674523..675321TCONS_00053344-exon-scaffold_228-1510915933:674523..675321Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1510915933:674198..674269TCONS_00053344-exon-scaffold_228-1510915933:674198..674269Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1491911889:676450..676487TCONS_00053344-exon-scaffold_228-1491911889:676450..676487Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1491911889:676053..676280TCONS_00053344-exon-scaffold_228-1491911889:676053..676280Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1491911889:675704..675867TCONS_00053344-exon-scaffold_228-1491911889:675704..675867Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1491911889:674523..675321TCONS_00053344-exon-scaffold_228-1491911889:674523..675321Clytia hemisphaericaexon
TCONS_00053344-exon-scaffold_228-1491911889:674198..674269TCONS_00053344-exon-scaffold_228-1491911889:674198..674269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:674198..676487 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.529785	0.277277	0.44173	0.275156	7.48657	3.62001	3.45026	2.82707	1.847	1.73515	0.765119	0.933807	0.609827	0.499189	0.478956	0.45406	0.432449	0.582796	0.723043	1.33397e-09	0.580761	0.336196	0.425409	0.542308	4.50433	4.04918	0.777848	0	0	0.410059
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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