TCONS_00053345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053345
Unique NameTCONS_00053345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053345 ID=TCONS_00053345|Name=TCONS_00053345|organism=Clytia hemisphaerica|type=transcript|length=1686bp
ACACTTTATATGATTTTGTATCTCTAGAAAGAAGAATAACAATgtaagat
aaaaaatgacatcTGCAATCCCTCGATCACCTTCAAGTGATGCATTGGTT
GATGAACGATTGATGAAGTTTGGatgGTATCATGGAGTTGCGTCAAGGGA
TGATTCTATGAAACATCTTGATGGAAAATCACCAGGACTTTATCTCgtca
gaaaaaggaaaggaACGACTGGAGAATATGTTTTATCTGTCAGtGAAATT
CAGAAAGTGTGTCATTACATTATCCAAGATGTCAATGGGATGTATTTCAA
GATTGGCGAACAACGTTTCGCTGACATTCCCTCAATCATTGAGTTCTATA
AGAAGCATATGTTGGACACCACGAACCTTATCGAACCTGCATTGCGTCCA
GGTGCAGCACTAGATCCCAAGTTAGGATCATCTACAACAAACAACACTTC
TTCGACCAGCAATGACATTGTCAAAGTCAAAGCCAAGTTCAGTTTCCCTG
GAAAGGATCTGGAAGACTTGCCCTTCAAGAAAGGTGACTTTTTGACGATC
ATACGCAAGGAAGAAGACCAGTGGTGGCTTGCAAGGGATAACACGGGACG
CGAAGGAATGATCCCTGTTCCCTACGTCGAAGTTGTCAACACTACTCCAA
CACCAACCAGATCACCATctgcaaaatcacaaaaaggaAGTTTCAAGAAA
ATCAACAATAATAATTATGCCAAACCAAAAGAGATTGCAGCTGCTCAACC
ACAAATACCAGAGAATCACAAAGGACCTATTTATGCTACTGCTCTCATCA
ATCGTGAACCAAATGTTTACGATGAAAAATTATTAGGAtttaaaAAAGGG
GACATCGtggaagttttaaaaacaaatgacGATGGTTTATGGGAAGGAAG
GCATACAGCTACACTTAAAGTAGGATATTTCCCCTTCACACATGTCAAAC
TGAATCTAGAATAATTTATAAATTATCAAGAGAAATTTGTTGAAATATAA
TAGGGGTAACGTTGGGATGTGTATCTTTTTCACTATTTCCgtatttttca
gttttatataaatttgtaaatttattgtaattttttctttatgttttttt
attattaattttttttattctgcaATTTTAAGAAGTTAAGAAGCAtttat
tttcatgatattttttacaatattattTCCTGTTAATTTTTTTGACGACA
AATCGATAAAGGCacttttttgattattttaatttatttgcaTGGCTATT
ATTTAATTACAATTTCACCCCAAtatatttcagttttttttgcaCAGGGT
TAATTTTAGTGAATGCTGGTTCGTTCTAATGTGAAATTGATATAACTAAA
CGGCtggaaaatgtatttttttcacttttttatcgAGGAATGATAATTGT
GGGTCTCGCATATATGGCCGGCTCGCCTGACACAATCACATTTTTCGTTC
TTTGACTAATTAAAACACCATGAATAGATCACATGACTAGAAGGATTCTT
CTTCGCCCCATTATTAATGGGTAAGGCCATAAAACAGCCCACAATCGCCT
CTCTCATGGTATTCAGTCAAGAGTTTTCgtaaaaatgtctttgtttgtAT
TTGGATTTTTTAGAGATTTACTTGAGATTTACTTTTTCTAGCCAGATGCT
TtgcacataaaaatcaaaataagaacatgatagcaN
Run BLAST on NCBI

transcript from alignment at scaffold_228:681230..686504-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053345 ID=TCONS_00053345|Name=TCONS_00053345|organism=Clytia hemisphaerica|type=transcript|length=5275bp|location=Sequence derived from alignment at scaffold_228:681230..686504- (Clytia hemisphaerica)
ACACTTTATATGATTTTGTATCTCTAGAAAGAAGAATAACAATGTAAGAT
AAAAAATGACATCTGCAATCCCTCGATCACCTTCAAGTGATGCATTGGTT
GATGAACGATTGATGAAGTTTGGGTAAGAAATATATTTTTGTGTCTATTT
TTTGTCTGTAAAAGGAAATCCGTCCAGTTCAATTTTCTCACATCCATGGA
AAAGTCAAAAGAAAAGCCTTTAAAGCAGAATTTTCGAGAAATTGGAGTCA
CATGTTCGATTTTTCATCCAGATTAACCAAAGCTGTTTACAACACTGATT
TATTGTTTAGCATTCAAATCAGGGTGTTAACATGATTTTATTTGAATGTT
AACAATTATTGTTCACTCAACTTTGCCTTCACATAGAAATCATGTCAGAA
AATGAATTTAGTGAATGTGGGAGATGACAATTGATTAAAATTGAGTTTAC
TATATTTTTTTTGCTTTGAGTGTAATTTCCACATGTTAGCGAAAGTGAGT
GCACTAACCTCCTCCACATGCTTGAGCTTTAAATATATATGCAAATGTGT
TTTTTTTAATTTGTTACAAATTATCAAGAGAGGAAAAAATACCTAGAACA
CTCGGTGGGGACAGTGACTAGTAGACTGTTCATCAATCCTAAAGGTATAG
TTAAGTACTCCGACCACCCGTATCGAAATTGAAAAGCCACCCCGTTACTG
AAATACCACATGTAAATGCGCTTTATCTAATTTTTTTTTTATTAGATGGT
ATCATGGAGTTGCGTCAAGGGATGATTCTATGAAACATCTTGATGGAAAA
TCACCAGGACTTTATCTCGTCAGAAAAAGGAAAGGAACGACTGGAGAATA
TGTTTTATCTGTCAGGTACCTTTCATTTTTAGAATCACTCTCTTTTCAAT
TAAATGCCTAAAATATGATCGTTTTCTCTATTTTCATTCAAAAAGGTCAT
TATTGGAGAGTTCTTTCGTATGCCCTATCCCTATTCTTGGTAAAGAATTG
CGATTTCTCTTACAAGATAAATCTGACAAATCAAATCGTATTTAAAGTTT
GTGTCGTGACAATCCCATTGAACTTTATTGTATTTTTTAGTGAAATTCAG
AAAGTGTGTCATTACATTATCCAAGATGTCAATGGGATGTATTTCAAGAT
TGGCGAACAACGTTTCGCTGACATTCCCTCAATCATTGAGTTCTATAAGA
AGCATATGTTGGACACCACGAACCTTATCGAACCTGTACGTAACGATTTA
TATATATTCTTTCACAGATATCAGATTCTTTTACACACCAGATATATGCT
AACTGCTCACAGTCCACCATGTTGTTTCCCAATTTACTTTAGATTTTCAA
ACGTTCGAATTTCAAAACATTCGAGTCGTGTTGTCGTGTTGTCGAGCTTT
TTTGACGACCAGAATTTAAAACAAGATGGCGGACTAGTCAGCTCTAAACC
TGGACACGTTTCCCATAAACGGATAGACCGGTCCAGTCAAATAGTTCGAG
ATCAGTGATAGTATTATTCTCATATGAAGAAGGAAAAGGTTTTCTTAAAG
ATTCTTTTCTTTGAAACTGTTTTGAATTCCTCGATTATTATTGATTCTTT
TTCTAGCTTTTTTCTAGTCTCATTTAATTGATATCAGAATAAGACGATCT
AGTATTTCTTACTTAAAGCCACAAACCTATCTTATCTTTACCATGTAAAA
TCATTTCAGGCATTGCGTCCAGGTGCAGCACTAGATCCCAAGTTAGGATC
ATCTACAACAAACAACACTTCTTCGACCAGCAATGACATTGTCAAAGTCA
AAGCCAAGTTCAGTTTCCCTGGAAAGGTAACTAGGATTCCAAAATGTTTA
TTTGACTTACGAAAATGATCGATAAGTTAACAGTAGTCTAAAGCTTGGTT
TATGTAAAGCAAATTTAGAAACATTTTCAGCGACTCAGCGACTCAGGAGT
GATCTCGCGTCAATACAATGTCTCCAAAAGTTTTGTTTATAGGGTTTCGC
TTGTAAAAATTGCTTGGATTTTTTAAAGGTATTGTGTTTTAGAAACCTGC
ATATGAAAATGCAACGTTTTAATCTATTAATGATAAAATAAAATCTATCT
AATAAAATCTATAATTGATAACAGTCAGCCTATCATTCCCCAAATGTCTT
TTTAAGTAACATCGAAGACATGGCTACACGTTTTTTGGTATAAGCATAGG
GTTCATTTGAATCACAAAGACGCTTTGAAACTTTATTTAAAATACATCAA
ATTCTGATGTGAATTTGGAATGGAACTCAGAGCAAAAACAATTATCATAA
ATGAATTGTTCAATCCTTAGGATCCCAAAGACTTTTCCTTAAAGAAACAC
TCTTTGCGATCATAAGAAACACTATCGTAATTAATCCAGAAGACTTGCCC
TTAAAATGAAAGGTGACTTTTTGACGATCAAACAAAACATTATCTTAATT
AAATTTTTCAATTCTTAGGATCTGGAAGACTTGCCCTTCAAGAAAGGTGA
CTTTTTGACGATCAAACAAAACATTATCTTAATTAAATTTTTCAATTCTT
AGGATCTGGAAGACTTGCCCTTCAAGAAAGGTGACTTTTTGACGATCATA
CGCAAGGAAGAAGACCAGTGGTGGCTTGCAAGGGATAACACGGGACGCGA
AGGAATGATCCCTGTTCCCTACGTCGAAGTTGTAAGTCTTTTATTGCTGT
TGTTTTTTAGATGCAGGTGTCTTATTTAGGCCCGGCGAACGGCGAATTTC
GCCGGTTCAAAGCACGAAAAAATTACAATTTTTTCGCCGCTCGAAAAGTT
CGGTTTGTCGCCTCAAGTGCATATTTACGCTAATCAATACACTTTGCTTG
CTAAGAAATCGCCGGCCTAGAATCTAGAAATCGCCAGAGTTAATTTTTCA
TTTGCCAATCTACCAAAAACAAAGCAAAACCCCTGTAGATGACCTAATGG
GCCGAACAGGACCGAAAGATAACTTTTTTTTGACATTTTAGTGCCGAACA
AATGTCTTAAAGTGCTCGGAGTTTCAATGTTTAGAATGTAGAATCCTTAT
TTCAGATTTGAGCTAATATTTTTCAACCTTGAGCTTTGTTGCAAAACTCA
TGAGAGCTATATGATCTTCAAATTTATGACCAGTTGTTTTTTACTCTCAC
CTTCATTTACAATGGCTAAAGCAATTTAGCTAAAACGTTTTGTGGGTTAC
CTCCTCCTAAATGACACTGATCGTTCATTTAGACTTTATTTCCCTGTTCT
GATCATTAAGCCATGAGCTATTCTTTACAAGAAATTACAAATATGATGAC
ACTTTGTCTTCAGGTCAACACTACTCCAACACCAACCAGATCACCATCTG
CAAAATCACAAAAAGGAAGTTTCAAGAAAATCAACAATAATAATTATGCC
AAACCAAAAGAGATTGCAGCTGCTCAACCACAAATACCAGAGAATCACAA
AGGACCTATTTATGCTACTGCTCTCATCAATCGTGAACCAAATGTTTACG
ATGAAAAATTATTAGGATTTAAAGTATGATTGATATTGTTTTCAAGTATT
TTACTAAATTAAAAATGAGTTTAATCTTTAGTTTGGTTCTGTTTTATGTG
GATAGTACGTCATACACGTCCGTTGCTTTTTCTACAGTCTGAACCCTGAT
TTCCAAAAACATGCTAACAAATTATTATCGTATTTTTATGCCTATCAATC
AAGAGGAATTAACCTATTGTCAAATTCAGTTTAGCTAGAATCTGAGAATG
TCGTATGTCTGCATGTCGCCGTGTCAATTCAAGACAGACTTAAATCCATT
TTTTCGAAAATTGATTTAAGACCATAATCCCCTATTTCAGCATGCACGCT
TTCCAAAAACGGCCTTAAGTCCACAGAATTCTAATGGGAAAGAGGTGTAT
TTTGCAATTCAAAAAAAATAAGAATTTAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAGAATTTAGAA
TGTTCCATAATATCAACCATAAACAGCCTTAAGTCCTAAATTTTAGGGAA
AATTTTTTCTATGAAGCATTGACATGAAATGTGTAGTCTTAAGTCCAATA
CATCTCAACCTTTAAAGCCAATTATCTCAAAATGGAATCTTGGAGACATC
CAAAATTGTCCGAATTGATTGAAATTTTTACACTTGTTCTTTTGGTGGAG
GTATTTTTTCATTTTTTGAAAATTCAGATTTGTGGGGTATGGGGATAAGG
CTTTGGAGTATTTCCATTTTAGGGTCTTTTAGTTTTCATATATCAAAAAT
TTTATGTCGATGTTTACAATTGGGCCTACGAGTAATTTAAAAGATACTGA
AGTTGAGCCAGTGCTGTTATCACGGTCGACAGTAATCTACAAACTCTATT
TGCAATAATTATACCATTTTATATCTATTTTAGAAAGGGGACATCGTGGA
AGTTTTAAAAACAAATGACGATGGTTTATGGGAAGGAAGGCATACAGCTA
CACTTAAAGTAGGATATTTCCCCTTCACACATGTCAAACTGAATCTAGAA
TAATTTATAAATTATCAAGAGAAATTTGTTGAAATATAATAGGGGTAACG
TTGGGATGTGTATCTTTTTCACTATTTCCGTATTTTTCAGTTTTATATAA
ATTTGTAAATTTATTGTAATTTTTTCTTTATGTTTTTTTATTATTAATTT
TTTTTATTCTGCAATTTTAAGAAGTTAAGAAGCATTTATTTTCATGATAT
TTTTTACAATATTATTTCCTGTTAATTTTTTTGACGACAAATCGATAAAG
GCACTTTTTTGATTATTTTAATTTATTTGCATGGCTATTATTTAATTACA
ATTTCACCCCAATATATTTCAGTTTTTTTTGCACAGGGTTAATTTTAGTG
AATGCTGGTTCGTTCTAATGTGAAATTGATATAACTAAACGGCTGGAAAA
TGTATTTTTTTCACTTTTTTATCGAGGAATGATAATTGTGGGTCTCGCAT
ATATGGCCGGCTCGCCTGACACAATCACATTTTTCGTTCTTTGACTAATT
AAAACACCATGAATAGATCACATGACTAGAAGGATTCTTCTTCGCCCCAT
TATTAATGGGTAAGGCCATAAAACAGCCCACAATCGCCTCTCTCATGGTA
TTCAGTCAAGAGTTTTCGTAAAAATGTCTTTGTTTGTATTTGGATTTTTT
AGAGATTTACTTGAGATTTACTTTTTCTAGCCAGATGCTTTGCACATAAA
AATCAAAATAAGAACATGATAGCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033662XLOC_033662Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053345-exon-scaffold_228-1575043694:686382..686504TCONS_00053345-exon-scaffold_228-1575043694:686382..686504Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:685640..685759TCONS_00053345-exon-scaffold_228-1575043694:685640..685759Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:685270..685414TCONS_00053345-exon-scaffold_228-1575043694:685270..685414Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:684679..684795TCONS_00053345-exon-scaffold_228-1575043694:684679..684795Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:683824..683952TCONS_00053345-exon-scaffold_228-1575043694:683824..683952Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:682982..683191TCONS_00053345-exon-scaffold_228-1575043694:682982..683191Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1575043694:681230..682071TCONS_00053345-exon-scaffold_228-1575043694:681230..682071Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:686382..686504TCONS_00053345-exon-scaffold_228-1510915933:686382..686504Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:685640..685759TCONS_00053345-exon-scaffold_228-1510915933:685640..685759Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:685270..685414TCONS_00053345-exon-scaffold_228-1510915933:685270..685414Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:684679..684795TCONS_00053345-exon-scaffold_228-1510915933:684679..684795Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:683824..683952TCONS_00053345-exon-scaffold_228-1510915933:683824..683952Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:682982..683191TCONS_00053345-exon-scaffold_228-1510915933:682982..683191Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1510915933:681230..682071TCONS_00053345-exon-scaffold_228-1510915933:681230..682071Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:686382..686504TCONS_00053345-exon-scaffold_228-1491911889:686382..686504Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:685640..685759TCONS_00053345-exon-scaffold_228-1491911889:685640..685759Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:685270..685414TCONS_00053345-exon-scaffold_228-1491911889:685270..685414Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:684679..684795TCONS_00053345-exon-scaffold_228-1491911889:684679..684795Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:683824..683952TCONS_00053345-exon-scaffold_228-1491911889:683824..683952Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:682982..683191TCONS_00053345-exon-scaffold_228-1491911889:682982..683191Clytia hemisphaericaexon
TCONS_00053345-exon-scaffold_228-1491911889:681230..682071TCONS_00053345-exon-scaffold_228-1491911889:681230..682071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_228supercontigscaffold_228:681230..686504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.35016	7.24955	3.3996	2.76722	6.75384	4.70985	10.2237	4.87151	10.6572	7.43389	7.08166	4.63121	10.863	10.568	9.24071	8.51153	10.224	11.0707	15.9587	19.1845	12.3087	13.0327	9.29509	10.6164	10.1352	20.0396	14.4755	11.3361	12.1305	11.1775
Blast
[Close]
BLAST of TCONS_00053345 vs. Swiss-Prot (Human)
Match: CRKL (Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.039e-64
Identity = 124/299 (41.47%), Postives = 166/299 (55.52%), Query Frame = 2 
Query:  116 KFGWYHGVASRDDSMKHLDGKSPGLYLVRKRKGTTGEYVLSVSEIQKVCHYIIQDVNGMYFKIGEQRFADIPSIIEFYKKHMLDTTNLIEPALRPGAALDPKLGXXXXXXXXXXXXDIVKVKAKFSFPGKDLEDLPFKKGDFLTIIRKEEDQWWLARDNTGREGMIPVPYVE-VVNTTPTPTRSPSAKSQKGSFKKINNNNYAKPKEIAA-AQPQ------------------IPENHKGPIYATALINREPNVYDEKLLGFKKGDIVEVLKTNDDGLWEGRHTATLKVGYFPFTHVKL 952
            +  WY G  SR ++   L G+  G++LVR      G+YVLSVSE  +V HYII  +    FKIG+Q F  +P+++EFYK H LDTT LIEPA R      P +GS +  N  +  +++  V+  + FPG D EDLPFKKG+ L II K E+QWW AR+  GR GMIPVPYVE +V ++P            G     N+N+Y  P+   A AQPQ                  +P    GP++A A+  R P  YD+  L  + GDIV+V + N +G WEG      + G FPFTHVK+
Sbjct:   11 RSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPR---YPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSP-----------HGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHVKI 293
The following BLAST results are available for this feature:
BLAST of TCONS_00053345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRKL1.039e-6441.47Crk-like protein OS=Homo sapiens GN=CRKL PE=1 SV=1[more]
back to top