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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=transcript|length=1089bp
TAACGGTCTAGGGTAATAAATAGTTgcggtttttcatttttctttctatt
acGCTTTTGAATTTTAGAGCACATGTTTTAACCGCAACAAGCATCGTAAT
AGCTACTTTCAACGTTAGATGCCAAGTGTTGTGGTGAAACAGAGTTTGCA
TTGCTTAATATACTAGCAACCTGTTTGACAAGAAATTCTATTGAGAGTGA
GTTCCGACTGAAGCCTTGGAAGATTGAATCCACGATCTTGGATAAGGATA
TCCACGATggataaattgaaaattgctTTCTTCTCAATTTGTCTTATATG
TACGGTCACAGCATATCCTCTGTACTTCACAAACACAGAGGAACcaaaca
aaaagtcatcaaaaccTACGACCGTCAGCTCATCTAGAACTACACTAACC
ACAACGGCAACAAAACCGACGACGACGACGATTTCGACAACACGTCGCAG
AAATACCATTGTCGAACATCCTAAGCGCTCATGCTCGTATTTCCCTTTGT
GCACAGAGGTTGAACGAAATGCCAAAAAATGTCTCGGTTGTTATGAACAA
GATTTTATGCTGACTGAATTTTGGGGAATATGTTTCTGCTATGAGCAACC
ACCGATGATAGCAATGCCATGATATCGTAATTAGTAATCTATTGGTTCCA
ATTGTGAAAATGCTACTCATCTAATATTggaccattccattttatatcca
tgcaGGATGAACGAACattccagggggtaatccgagaaaactttccaggg
ggtgtttttttcatttttccaagggggtaaaaagtcattgtaaaatttcc
aggggtaaatgactgattttagttcgtccaccctcgcCTTAATGTATgag
aagaatttttccaagggtgtttttgcaaattttgccattttccaggggct
attcacaaattttcaatatttttttttgacttgaaaaggttcgtccaccc
cactgtatggttttttaatggaacagcccattatTGATTGTGTTTGAAGA
AGAACAATAACTTGCAATGAACTTAGACCTCATCGATGTGCTCCAAGACA
ACAGCTTGGCCTCAGTGATTGAAAGTTCTGATGGAAAAG Run BLAST on NCBI protein sequence of TCONS_00053349-protein >TCONS_00053349-protein ID=TCONS_00053349-protein|Name=TCONS_00053349-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MDKLKIAFFSICLICTVTAYPLYFTNTEEPNKKSSKPTTVSSSRTTLTTT
ATKPTTTTISTTRRRNTIVEHPKRSCSYFPLCTEVERNAKKCLGCYEQDF
MLTEFWGICFCYEQPPMIAMP Run BLAST on NCBI transcript from alignment at scaffold_228:708126..709580- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at scaffold_228:708126..709580- (Clytia hemisphaerica)
TAACGGTCTAGGGTAATAAATAGTTGCGGTTTTTCATTTTTCTTTCTATT
ACGCTTTTGAATTTTAGAGCACATGTTTTAACCGCAACAAGCATCGTAAT
AGCTACTTTCAACGTTAGATGCCAAGTGTTGTGGTGAAACAGAGTTTGCA
TTGCTTAATATACTAGCAACCTGTTTGACAAGAAATTCTATTGAGAGTGA
GTTCCGACTGAAGCCTTGGAAGATTGAATCCACGATCTTGGATAAGGATA
TCCACGATGGATAAATTGAAAATTGCTTTCTTCTCAATTTGTCTTATATG
TACGGTAAGTTTCTTGTATTCTGCAATAGAAGTCCCTTCTTTTTAACACC
TTGTAATATTTTTTTATTTTAAAAAGATTACCCCGTCTAGGCTTTATGTT
CAAATGTTGACAGTGGCTCTAGAAAATGGATTTGAAACATTCAGGAAAAT
TCTCGGCTTCTATTTCAACATTTATATGATTTAAGCTGCGAAAAGAAAAC
TAGGTTTGAGCTGTTACGAATGTGCTAGGGACCTAAACCTCCTTATTGAG
GTGACGTTTTATTTGCCGTCTAAAAGGTTCAACTTAGTAATAACGATTAG
CATTATGCAGATGTATTGTGGGAATCTCTACTCTTCAAGATTCCTTTCTA
TCTCTTTATTTTACTCCTAGGTCACAGCATATCCTCTGTACTTCACAAAC
ACAGAGGAACCAAACAAAAAGTCATCAAAACCTACGACCGTCAGCTCATC
TAGAACTACACTAACCACAACGGCAACAAAACCGACGACGACGACGATTT
CGACAACACGTCGCAGAAATACCATTGTCGAACATCCTAAGCGCTCATGC
TCGTATTTCCCTTTGTGCACAGAGGTTGAACGAAATGCCAAAAAATGTCT
CGGTTGTTATGAACAAGATTTTATGCTGACTGAATTTTGGGGAATATGTT
TCTGCTATGAGCAACCACCGATGATAGCAATGCCATGATATCGTAATTAG
TAATCTATTGGTTCCAATTGTGAAAATGCTACTCATCTAATATTGGACCA
TTCCATTTTATATCCATGCAGGATGAACGAACATTCCAGGGGGTAATCCG
AGAAAACTTTCCAGGGGGTGTTTTTTTCATTTTTCCAAGGGGGTAAAAAG
TCATTGTAAAATTTCCAGGGGTAAATGACTGATTTTAGTTCGTCCACCCT
CGCCTTAATGTATGAGAAGAATTTTTCCAAGGGTGTTTTTGCAAATTTTG
CCATTTTCCAGGGGCTATTCACAAATTTTCAATATTTTTTTTTGACTTGA
AAAGGTTCGTCCACCCCACTGTATGGTTTTTTAATGGAACAGCCCATTAT
TGATTGTGTTTGAAGAAGAACAATAACTTGCAATGAACTTAGACCTCATC
GATGTGCTCCAAGACAACAGCTTGGCCTCAGTGATTGAAAGTTCTGATGG
AAAAG Coding sequence (CDS) from alignment at scaffold_228:708126..709580- >TCONS_00053349 ID=TCONS_00053349|Name=TCONS_00053349|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_228:708126..709580- (Clytia hemisphaerica)
GTCACAGCATATCCTCTGTACTTCACAAACACAGAGGAACCAAACAAAAA
GTCATCAAAACCTACGACCGTCAGCTCATCTAGAACTACACTAACCACAA
CGGCAACAAAACCGACGACGACGACGATTTCGACAACACGTCGCAGAAAT
ACCATTGTCGAACATCCTAAGCGCTCATGCTCGTATTTCCCTTTGTGCAC
AGAGGTTGAACGAAATGCCAAAAAATGTCTCGGTTGTTATGAACAAGATT
TTATGCTGACTGAATTTTGGGGAATATGTTTCTGCTATGAGCAACCACCG
ATGATAGCAATGCCATGAATGGATAAATTGAAAATTGCTTTCTTCTCAAT
TTGTCTTATATGTACGGTCACAGCATATCCTCTGTACTTCACAAACACAG
AGGAACCAAACAAAAAGTCATCAAAACCTACGACCGTCAGCTCATCTAGA
ACTACACTAACCACAACGGCAACAAAACCGACGACGACGACGATTTCGAC
AACACGTCGCAGAAATACCATTGTCGAACATCCTAAGCGCTCATGCTCGT
ATTTCCCTTTGTGCACAGAGGTTGAACGAAATGCCAAAAAATGTCTCGGT
TGTTATGAACAAGATTTTATGCTGACTGAATTTTGGGGAATATGTTTCTG
CTATGAGCAACCACCGATGATAGCAATGCCATGAATGGATAAATTGAAAA
TTGCTTTCTTCTCAATTTGTCTTATATGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053349-exon-scaffold_228-1575043694:709277..709580 | TCONS_00053349-exon-scaffold_228-1575043694:709277..709580 | Clytia hemisphaerica | exon |
| TCONS_00053349-exon-scaffold_228-1575043694:708126..708910 | TCONS_00053349-exon-scaffold_228-1575043694:708126..708910 | Clytia hemisphaerica | exon |
| TCONS_00053349-exon-scaffold_228-1510915933:709277..709580 | TCONS_00053349-exon-scaffold_228-1510915933:709277..709580 | Clytia hemisphaerica | exon |
| TCONS_00053349-exon-scaffold_228-1510915933:708126..708910 | TCONS_00053349-exon-scaffold_228-1510915933:708126..708910 | Clytia hemisphaerica | exon |
| TCONS_00053349-exon-scaffold_228-1491911889:709277..709580 | TCONS_00053349-exon-scaffold_228-1491911889:709277..709580 | Clytia hemisphaerica | exon |
| TCONS_00053349-exon-scaffold_228-1491911889:708126..708910 | TCONS_00053349-exon-scaffold_228-1491911889:708126..708910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:708126..709580 - |
Blast
The following BLAST results are available for this feature:
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