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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053350 ID=TCONS_00053350|Name=TCONS_00053350|organism=Clytia hemisphaerica|type=transcript|length=1258bp
ATTAATTAAGGTTTTGGTTTAATGGCAAATTTGGTGccaattttctgatt
ttgaatTCATTCTTCTATTTATAAACGGTATCAGATTCGCCCATATAAAA
GTTTGTCATCAATTCAGGTATcactttataaaaaaatagaaatcatATTA
TACCGTAGTCTCCTCTTCGTTACGATACTTCGAATTGTTTTCATCTTGTG
AGAGGAAAACACTGATTGAAATTGTGAATTTATTTGTTTAGAGCATTGAC
TGGTTTGTAGCATTTCTTTTGTGGGCAATCACTCTGTCACAACTATGGTC
CTGATTGATCGATCAAAACTTCTCTTAATGGTGGTTTCGTTTAGCTGCTG
GCAAATCATCAAACCGACAACATCAGCAGCCATTGGTTTAGAAGATGAAC
TCATATCAATGTTCGCTGAAACGACAGAACAGAGTGATTCCATTGTGTTT
GTGTCTTCTGAAAGtgaaacaaacaacaaaaacacAAGCTCCAGTACATT
TCAAGAAACAGTCGAAAGCAAAACCAATAACAGAACAGAAGCGACTTCCT
TGACAGAATCTGGCGTGTCAGAGAATGAGAATGAACCAGCTACAACAATT
CTAACAGTAACTACACCGATAGTTTCTACAACTCAAATATCTACTACAAA
TAACATTCCAAATGTAGTTAAGAGTAATTCACACACAACTTCGAGCTCAT
TAACATCAACTATTAAAACAACGGAAACGGCCATCCCTCTGACGGCAACG
ACTACCCCTTCTACAACAACAACCGTCCCTACTACGACAACGACTACccc
gacaacaacaacaaccacccctacaacaacaacgaccacacctactacga
caacgaccacccctacaactacaacgaccacacttactacgacaacgacc
accacaacaactacaacgaccacccctacaACTACAACGGCTACTCCTAC
AACTACGACGACCACCCCTTCAACTACAACGACCAAACCGCTACCTGTTT
ACAGAAATTGTGAACATTTTCCAGTTTGTTCAGAACCAGACAAAGTTTTC
AGAAACTGCAATCGATGTTTCGGAACACCTGGTGATTTTCAATTTATTAT
GTTTTGGGGGAATAGCTGTTTTTGCTATAAATTACCACCACAGATCCCGC
AACCGTGATTAAAGTTTacgttattttaattttttttgtatattgTATTT
ATATTTAGAAAAGTATACTAAGGCTTCATTATtaacaaattataaaaata
taatgatT Run BLAST on NCBI transcript from alignment at scaffold_228:713374..715553- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053350 ID=TCONS_00053350|Name=TCONS_00053350|organism=Clytia hemisphaerica|type=transcript|length=2180bp|location=Sequence derived from alignment at scaffold_228:713374..715553- (Clytia hemisphaerica)
ATTAATTAAGGTTTTGGTTTAATGGCAAATTTGGTGCCAATTTTCTGATT
TTGAATTCATTCTTCTATTTATAAACGGTATCAGATTCGCCCATATAAAA
GTTTGTCATCAATTCAGGTATCACTTTATAAAAAAATAGAAATCATATTA
TACCGTAGTCTCCTCTTCGTTACGATACTTCGAATTGTTTTCATCTTGTG
AGAGGAAAACACTGATTGAAATTGTGAATTTATTTGTTTAGAGCATTGAC
TGGTTTGTAGCATTTCTTTTGTGGGCAATCACTCTGTCACAAGTAAGTAA
TATACTCTGAGTTTGAATATCTTTTCACATTCTGTCGTACTGAAAATAGG
TTCTGGTTATCTCCAGGCTGTTAGAGTCAGTTTTTTATCTTCTTAAGTCT
CTTACTAATGAAAAAGCCACAATATTAACTATAAAGGGTCGGAATTGAAG
GGGTTTTCTAAAGGTACGTCGAAGTCAAAGGGTAGAAAATATTTTGAAAA
GCGCCTCTCTAAGGTTCACTTTTTCATCAAGTTATTCTTTCTNTAAGGGT
AGAAAATATTTTGAAAGGCGCCTCTCTAAGGTTCACTTTTTCACCAAGTT
ATTCTTTCTGAGGCTCAATTTCAGGTAAATATTTTTGTTAAATATGTGCA
TGTACATGTATAAGTTTTAAGACTGATTTTTTTGTTAACAGCTATGGTCC
TGATTGATCGATCAAAACTTCTCTTAATGGTGGTTTCGTTTAGCTGCTGG
CAAATCATCAAACCGGTAAAATTCACTTATTAGTCATATCTCTACAAACA
ATACCTAGGCCTACCTAGATGATCTAATACTATAATTGTACTGGTGTTGA
ACCAATGAATGTCTAAAAGTGTCCCTTCCATAGGGCCTTTTTGTTGAGAA
TTGATAGGTGTTTTATCAACCTCGTCCCCATGTATATTTACGTTACTGAT
GGGTGCCAGAGATTATCTAGCGGTATCAGTAAGCATCAAAAAAGCTCATA
ATGCGCAGAGAACGAGGTTGGTGTTTTATAAGATTGTATAACTCAAGATT
ACGTCATTTTTCATTTTGGAAACACCCGAAAAAACCGGAATTTGAACCAT
TTGTTGTTATTCTTAGTAACACTCATGGCTCAATTTACGGTGTTTTTGGG
TGTTTCCGATAGGGAAAATGACGTAATCTTGAGTTACACATATCAAGAGT
TGCAGCAAAAAGTAACCTTTACATTTCATCAATTTATTCATCGATCGAGG
TATTCTTTTAAATTATTTTTAAGCTATTTCTATTTCAGACAACATCAGCA
GCCATTGGTTTAGAAGATGAACTCATATCAATGTTCGCTGAAACGACAGA
ACAGAGTGATTCCATTGTGTTTGTGTCTTCTGAAAGTGAAACAAACAACA
AAAACACAAGCTCCAGTACATTTCAAGAAACAGTCGAAAGCAAAACCAAT
AACAGAACAGAAGCGACTTCCTTGACAGAATCTGGCGTGTCAGAGAATGA
GAATGAACCAGCTACAACAATTCTAACAGTAACTACACCGATAGTTTCTA
CAACTCAAATATCTACTACAAATAACATTCCAAATGTAGTTAAGAGTAAT
TCACACACAACTTCGAGCTCATTAACATCAACTATTAAAACAACGGAAAC
GGCCATCCCTCTGACGGCAACGACTACCCCTTCTACAACAACAACCGTCC
CTACTACGACAACGACTACCCCGACAACAACAACAACCACCCCTACAACA
ACAACGACCACACCTACTACGACAACGACCACCCCTACAACTACAACGAC
CACACTTACTACGACAACGACCACCACAACAACTACAACGACCACCCCTA
CAACTACAACGGCTACTCCTACAACTACGACGACCACCCCTTCAACTACA
ACGACCAAACCGCTACCTGTTTACAGAAATTGTGAACATTTTCCAGTTTG
TTCAGAACCAGACAAAGTTTTCAGAAACTGCAATCGATGTTTCGGAACAC
CTGGTGATTTTCAATTTATTATGTTTTGGGGGAATAGCTGTTTTTGCTAT
AAATTACCACCACAGATCCCGCAACCGTGATTAAAGTTTACGTTATTTTA
ATTTTTTTTGTATATTGTATTTATATTTAGAAAAGTATACTAAGGCTTCA
TTATTAACAAATTATAAAAATATAATGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053350-exon-scaffold_228-1575043694:715262..715553 | TCONS_00053350-exon-scaffold_228-1575043694:715262..715553 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1575043694:714789..714862 | TCONS_00053350-exon-scaffold_228-1575043694:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1575043694:713374..714265 | TCONS_00053350-exon-scaffold_228-1575043694:713374..714265 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1510915933:715262..715553 | TCONS_00053350-exon-scaffold_228-1510915933:715262..715553 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1510915933:714789..714862 | TCONS_00053350-exon-scaffold_228-1510915933:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1510915933:713374..714265 | TCONS_00053350-exon-scaffold_228-1510915933:713374..714265 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1491911889:715262..715553 | TCONS_00053350-exon-scaffold_228-1491911889:715262..715553 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1491911889:714789..714862 | TCONS_00053350-exon-scaffold_228-1491911889:714789..714862 | Clytia hemisphaerica | exon |
| TCONS_00053350-exon-scaffold_228-1491911889:713374..714265 | TCONS_00053350-exon-scaffold_228-1491911889:713374..714265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_228 | supercontig | scaffold_228:713374..715553 - |
Blast
The following BLAST results are available for this feature:
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